CsGy3G019320 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G019320
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	S4 RNA-binding domain-containing protein
Location	Gy14Chr3: 15581814 .. 15588259 (+)
RNA-Seq Expression	CsGy3G019320
Synteny	CsGy3G019320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTACTGAGCCATGGCCGCAACGGCAACGAGCATTGCAGCTCTGTGGAGTTTAAGAAGGGCGGCTCAGTTTTCGAGTTTCCGAAGACCCCTTGCCCTTAATCTCAATAGGCTCTGCTTTAACGAGGCCCGGTTTCCCTCTTCTCCTCTGGGGACCTCAGGTTTCGATTCGCTTCTTCATCTCAATGTTATAGAAAATTATGGATTATTATTGTTTAGTGGGCTGTTTATTCTTTAATTCCACTGTGATTGCTTGCTAAGATCAAAGTAATCGAGCACTTAGTTCAGGTGATATTAGTTTTCTATTGGGCATCGATTGGAATTAATCGACCTTATTGGGGGAGGGGCGCTGCTGTATGCATCCTATCTCCATACCAATGTAGATATCGCTGAGATTACTGCTGAAAGTCTATTCGAATTGGAGCCAGATAATGAGCTCAATTTTGAGCTTCTGGTAAAGATTTATGGCAATGCCGGGAGATCGGAAGACGAGAAGCGAGTGAAATTAATGATGACAGAACGAGGACTGGATTCATAGTGTAGATAATATGTAAAAATCCATTCACACTCATGGATGGATAATGAATTCATCTGGATAGATAACAGGTTTAGTGTGAAGTTAAAATGAGAATTCACACAGAGTTGGAAATGGATTCCACCGAGAGTAAAGCAATCAATGCCAGAAGCTCAAGACACTCAAGCTTGCTGATTTTTTGTGGAAAACCTCCTACTTCTACTTCTTTCGTTCTCTATAGTAGATTTTATTTTTGGGCTTGTTTATCTCCTGTTGTTCTTTACTTTCTGTTTTGTATTTGCGTTGGTTGAATTGGTGTAGTTGGAGTTTCAATGTTTTTGGATGTACTATTGGATATGGTGACGACACTAAAGTGGTCTCAACCTAGTTGAAATGTCCGATGCACCTCTTGATCCTTCCTTTTGCTTCTTTATTGTACTTTGAGTTTTATTTTAATAAAGAAGCTCACCTCTATTTTAAAAAAAGCAATCATATTGGTTTAAAATCATTTCTTAAAGTGGATAATCCCTAAAGTGATTGATCAGCAATCACTGTATGGTGATTTGGCACTTATAGAATTACTTTTAAATGCTTTTCAACTAAACAACTTTTGTTTGAAATGTCAACCAGGACTTTAATTGTAATCAATTTTGTAGACAATGTTTTAACAAAAATGCTTTCTTAAAAGTGTTTAACTTATAAGGTATGCTTTCATTTAGGACAACGTTTACTACTGTATGAAATGCTGCAGCATTACGCTTGGGCAGTAATGGTTAGAGATGTTTTCGGAAGGGGTGCCTATTGGGTTTCAGGCCTCCATCTTCGTGTTGAAAACATAGTAACTTAATATCCCTGTTGTCTATTGAAGTCCATGTGGGGCAGTTGATAGATACCTCAAATACGAGAAAAGGAAAATTATATGTTGAACTTGCAGATTCGTAATAAATTATGAATAAAATAACCTTGGTTTGGAAAAAAAGTACTTCCTTTTAAACTATGTATCCACCAGCCCGTCTTATCTATCAAATCCTTAAATTATGTCACTTGCATTATAAGTCAAAAAATGAACATGCTGTACATGAGATAAGGGAAAAGATAAGTAATTCTTCTAATCCTTAATGTTAACCCAAGTATTTTTACTCATACGTTTCAATAGTTGCATGTTAATAATCATCCAAATGTGATTTCAGGAATATGCCAATTAGTGCAAGCTGTAAAGGGAGATATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGACGTGAAACAAATTCTTGTGATGGTATTGCCTGATAAACTTTTAATGACATGTTAGTATGCAAGACTAGAGCTTTAACTATCTATATATTCTTTTACCTTGCATTCTTTATTCATGCTGTGAAGACTGAATTAGCATGACTCCACAAATTTCTATAGATTTAAAGGGAAAAAGTCAATCCTTTTTCTTCACCTTTCATTCTTATGAAATTTGAAAAAGAAACATCAATATAGTAACCCTTTTGTCTCTTGGTTGTGACTTGTGAGGGATGATTTTGGTACTTTAAATCTTTTGGTTTCATCTAGGCTAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTTACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTATACAAAAATTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGTGAAAATATAGAAGCCTTGTTTGTTTTCTTCAGTTGGGGCTTGAGTATATGAATCTAAGATAGATACCACATGTATTTCAAGTTGCCAAAATTTTCAGGCAGAGCGCTGCCGGATTTCTGTTGGTCATGCAGATGAACTAACAAGTGATCCAGACATAATTTCAGCATTGAGGTATTGTTCTTTAATCTTTCACTTTAGTCCACTTATTTGAGCGGTGGAATCAATTATTTTTTTGTTGTTTCTAACTTTCTTCTTTCTGAAGGGTTTTATTTTTTATTTTAAATTTTTTTCCTAGTATCACAGGAAATTTTACGTTTCACCCTTGTTCACATGGGGACTTCCTTGGATCAATTCTTGGTACTGGCATTGCTAGAGAAAAGCTTGGTGATATCATGCTCCAGGTATAATCATATTAAATATGAAGTATAATTACAACTATTTTGTTCTCATTCTTGCTGCACATTTGAAGCTTCGCGTGCTGCTATTGATGGCATTTTTTAATGATGTATTATCTTATAATGACTATTTGAACTTGTGACTGATGAAGTATTATAAATGCATTAAACTTTGGTCATCTATAGGTTGGTTTTATTTTATGTTGAGGAATCTAATTTTCTTTGTCAAATCCCCAAAAACTGATGGTAAAAGTTTTGCTTTGGGTTATCATGCGCTTGGTGCATCCCGCAGTGACTAAAAGTTTGGTCAGAAATGTGGGCATATACATTTTTTTTAATCATTTCATGTGGAATAGAACTTATGAAAAAGATTCAATTTAGATAAATACTACAACGTCTAACTGCATGCCTTGTCTGTTTCCAGCAGTAGTTTTGTGTAAATTTTATAGGTTTTTGATAAAAAATGGCCATCTAGCCATCGTGGGCCAGATTTCTTTATTCTCTTAGCATTCCCTTATTTTCAGGAAGAAACGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTGATATCATCACTGCGCAAGGTAGTGTCATTGTCTTGGATGGTTGCTTCTAACATTATGTTACATAAATTAATATGCGAATGAAAAAATGTGTTACCTCTGATTGTATTTCTTGTGTGTATTAAATAAGTTAAGGTACATATTGGTGAAGCCTGCATGACCTAATAGATAATCAAACTTTTTGAAAATTTTCTTCATTTATCTCTTTATTTGTCATGCCATTCTTAATGTCAGGTTGGCAATGTCACAGTTTCTTGTACGAGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGTATGAGTTTATGTTGGTAAATTTTCATGTTGGTTTATGATTATTTTAATTTAGTGTTTTCTTCTTTCATGTGCAGGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTAGATGCTATAGCAAGTGCTGGATTCAAGATTTCAAGATCTAAACTAGTGGATTTAATCAGGTGACGTGGCTTCTGGTTTCTGCTACCATATTTTATTGAAAGTGATAAACAGGAAATATGTCACCAAGTTTCCTAGAAACCCGAGAATCGGGAGAAAAACCATGATTTGACTTTCTTATTAATTTCTCATATTAACAAAATGTACAACAGGGGAAAATAAATAATCAACAACCTTAATGTAAAAAAGAAAAGAATATTAGGTTAAGCCCATTAATTCTAACCTCCCCCGAGTTGGATGCTAATATCAGCAAGGCCCAACTTGCTAACACATGAATCAAAACTTTGTCTGAGAAGCCCCTTGGTGAGAATATCAGCTCTGTCTGGCTGGATTTGTGGTGTGTGTATGGGCGACTGAACAAAAGTGTTATGCAGCTGGGAAAAGAATGAAAGGGGCTGGACTGGTTGAATGGTGGAGTGGGTTGGTGGTGGCGCGTGGACGGACGGGCTTGGCAATGGCGGCACGTGGAAGGATTCGCTTGGCGCGTGCGGCTGGTAACTTCATTCGGCAGCACGGTTGGCTGCGAGGGTTGGCTAGGACTACTCACCGGCAATTTCTGAAGCTGAAGAAACAGATTGGCCATGACGGCAGGGACGGCACTCATCCCGGAGGTGGCTGTCTCTTTGTCGTCCTTTGTTTGAGTTTCATCAATATTGTTGTCTAGTATTTCGTCATTGTCCCGCTCTGATACCATATTTAAAGAAGGAAATATGACACCAAGTTACGTGGAAACATGAGAACCGGAAGAAAAACCACGATTTGACTTGTTAATTTCTCATGTTAACAAAGGGTACAATAGAGAAAAATAAATAGACAATGAGCTAGAAAAGAATATTAGGGTTAATCTTTCCTTGAGCTTAAGCCCACAATTTCGAACATATTATATCTCACAGATTAAAAATACTGACATTGTTCCTTCAAAATTCTATTTATTTGGCAAGTAATCATTATATAAGAAGGATTCAACTTTTGGAACAAACAATTTGAAGAACTATTGTCTAAGTTCCAATCCCTAAAGAGAATATGTTGTTGAATCTTACGCAATAGTGCTTCCCTTCTATTTTCCATTTTTACTAGTGGAATATAGTTGACTTGATCCAAAACTTTACACCTTATGCTCAATACTGATGAAAGCATTTGAGACTACATTAATTGGGTGATACATGACAGATTTTAATAATGTATAGGTTTCCTTCTATCCTCCGTTGATTTGCCTATTTGAACATAATCTGAAACTTTAGACATCATTTGTTGTATCTGTAGATGGTTACATTATGCCTTAATATGAATGATAAATACACAACTTTCTTAAAGTTTCTGGGAAATAAGGTGTTGCAATACCTTATCTCCTATTTCTTTTGTGAAAGTATATTAACCTGAAACTGTTATATGAGCAGTAGCGGGGATGTTCGTGTCAATTGGACGCCAATTACAAAAAATGGAACCATTTTAAAGACTGACGATATTGTTTCTGTTAGTGGCAAAGGGAGACTAAAGGTGAGTTTTTTCAGTTGAATCGAAACCAAAACTAGTTGCACTGGGTTCATAAATTTTCTAGCTTAGGATTTCTGACTTCTGGTTATTTTCCTCATTCAGATTGGAGAAATAAATTCAACAAAAAAGGGAAAATTTGCTGTTGAGCTTATCAGATATGTGTAAGCTCTAGAGATATTGTCTATTGGAGATGAACTGGGTAAGTCTTCACAGGAGCCTCTTTGTGGGGTGAAATTAGGATTGCTTCCTTTGGAATAACTGAAGTAAGTCATTATTCAACATGACATTAATATGATTGTATATGTGAAGATCCAAACACTGATTCATCCATTCTTAAAAATTTCATTGGGAAAATCTGTCTCAGCATTTCAATGTCAGTGCTTTTTAGTTCTTTGTTTCTGGTTGTGTTGCCTTCTTTTCTGGAACGAATTCGTTCAAACTAATGTTTGTCTAATGAGGGAATTTAAGCACAAAGTTATAGCTTCACATTAACTATTTGTTATTCCAATGATTTATCTCATCTCCATCTCCTAATATGCTGTTATTGTTGTGTATTACTTGGTGTACAAGTCTCGATTTGTTAGTTGACTCTGATTTTTTCTAATTTGTTTTTAATATATTGGTTGATTGAAGTTCATACAAAAGTGGAAATCAATATATCTTTTTCAACAGCTAATTAAGAAAAAAAAGCAAAATTTCAAATTTCCAAAATATGCATAAGATAGCAATTTTCTAACTTAGGTGTTTGGGATGAGTTGGTTGTAGTCTATGGATTATAATAGTTTGTGAAAATGAAAGTGAAAGAGGATAAATGAAAGTGAAAGAGTATAGATAGAAAATACTAAAGCATGACAACAGTCAAATTTCAAATAAAATTACCGTGGATAATTTAGATTATAAATAATTGTAAACACTACCATTATATTTAGTTGGGGGTTCAAAAACTGGATGAATTGATGATTTGGATGTAGTTAAATAGTTTTTATAAGGAATACCAAACGAATCCTAACTGAAACTTGATGCTAAATGGACTACATTATCTGTTATTTGCTTTACTTCCAATACTTCAAAAGTGAAAGATTGGCATTTTGAACCGAGTTTTATTACATTACATAGGTTTGACCAAGCAAGATAAGTAGAACCACTGTTGTACAGACAGAAAAATATTTCTTCAGTTTAAACTTTGAACAACAATCGCCGAGAGAGGGAGTAAATAGGGGAAACTTGCTGAATGGAACAGTCTCTCAGGGTAAAATTGTCAAGCTGTGATGTTATTGATCATTTTCAGGATT

mRNA sequence

CTTACTGAGCCATGGCCGCAACGGCAACGAGCATTGCAGCTCTGTGGAGTTTAAGAAGGGCGGCTCAGTTTTCGAGTTTCCGAAGACCCCTTGCCCTTAATCTCAATAGGCTCTGCTTTAACGAGGCCCGGTTTCCCTCTTCTCCTCTGGGGACCTCAGGAATATGCCAATTAGTGCAAGCTGTAAAGGGAGATATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGACGTGAAACAAATTCTTGTGATGGCTAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTTACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTATACAAAAATTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGTCATGCAGATGAACTAACAAGTGATCCAGACATAATTTCAGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGTTCACATGGGGACTTCCTTGGATCAATTCTTGGTACTGGCATTGCTAGAGAAAAGCTTGGTGATATCATGCTCCAGGAAGAAACGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTGATATCATCACTGCGCAAGGTTGGCAATGTCACAGTTTCTTGTACGAGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTAGATGCTATAGCAAGTGCTGGATTCAAGATTTCAAGATCTAAACTAGTGGATTTAATCAGTAGCGGGGATGTTCGTGTCAATTGGACGCCAATTACAAAAAATGGAACCATTTTAAAGACTGACGATATTGTTTCTGTTAGTGGCAAAGGGAGACTAAAGATTGGAGAAATAAATTCAACAAAAAAGGGAAAATTTGCTGTTGAGCTTATCAGATATGTGTAAGCTCTAGAGATATTGTCTATTGGAGATGAACTGGGTAAGTCTTCACAGGAGCCTCTTTGTGGGGTGAAATTAGGATTGCTTCCTTTGGAATAACTGAAGTTTGACCAAGCAAGATAAGTAGAACCACTGTTGTACAGACAGAAAAATATTTCTTCAGTTTAAACTTTGAACAACAATCGCCGAGAGAGGGAGTAAATAGGGGAAACTTGCTGAATGGAACAGTCTCTCAGGGTAAAATTGTCAAGCTGTGATGTTATTGATCATTTTCAGGATT

Coding sequence (CDS)

ATGGCCGCAACGGCAACGAGCATTGCAGCTCTGTGGAGTTTAAGAAGGGCGGCTCAGTTTTCGAGTTTCCGAAGACCCCTTGCCCTTAATCTCAATAGGCTCTGCTTTAACGAGGCCCGGTTTCCCTCTTCTCCTCTGGGGACCTCAGGAATATGCCAATTAGTGCAAGCTGTAAAGGGAGATATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGACGTGAAACAAATTCTTGTGATGGCTAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTTACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTATACAAAAATTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGTCATGCAGATGAACTAACAAGTGATCCAGACATAATTTCAGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGTTCACATGGGGACTTCCTTGGATCAATTCTTGGTACTGGCATTGCTAGAGAAAAGCTTGGTGATATCATGCTCCAGGAAGAAACGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTGATATCATCACTGCGCAAGGTTGGCAATGTCACAGTTTCTTGTACGAGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTAGATGCTATAGCAAGTGCTGGATTCAAGATTTCAAGATCTAAACTAGTGGATTTAATCAGTAGCGGGGATGTTCGTGTCAATTGGACGCCAATTACAAAAAATGGAACCATTTTAAAGACTGACGATATTGTTTCTGTTAGTGGCAAAGGGAGACTAAAGATTGGAGAAATAAATTCAACAAAAAAGGGAAAATTTGCTGTTGAGCTTATCAGATATGTGTAA

Protein sequence

MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTDDIVSVSGKGRLKIGEINSTKKGKFAVELIRYV*

Homology

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BLAST of CsGy3G019320 vs. ExPASy Swiss-Prot
Match: P71020 (Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) OX=224308 GN=ylmH PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.0e-18
Identity = 68/225 (30.22%), Postives = 111/225 (49.33%), Query Frame = 0


Query: 97  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDI-ISALS 156
           T+FL P   +E ++  A+   ADV     GGY  AER R  +        + D  + A +
Sbjct: 35  TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKRAILFPEYITPEESDFELQAFN 94

Query: 157 ITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPELVDFLISSLRKVG 216
           +     F    H   LG+++G G+ R+K GDI+   ET  Q+++  +  DF+ + L + G
Sbjct: 95  VRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETAVQLIVSADTADFVAAQLTQAG 154

Query: 217 NVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVN 276
              VS  +I L+ L       +      +SLR+DA+ ++  + SR K   L+ +G V+VN
Sbjct: 155 KAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVKVN 214

Query: 277 WTPITKNGTILKTDDIVSVSGKGRLKIGEI-NSTKKGKFAVELIR 318
           W  +     I+   D++S+ G GR  + +I   TKK K+ V   R
Sbjct: 215 WKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRVTFER 255

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BLAST of CsGy3G019320 vs. NCBI nr
Match: XP_004146247.1 (uncharacterized protein LOC101221944 [Cucumis sativus] >XP_031738291.1 uncharacterized protein LOC101221944 [Cucumis sativus] >KGN57626.1 hypothetical protein Csa_011390 [Cucumis sativus])

HSP 1 Score: 604 bits (1557), Expect = 2.95e-217
Identity = 317/319 (99.37%), Postives = 317/319 (99.37%), Query Frame = 0


Query: 1   MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKG 60
           MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKG
Sbjct: 1   MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKG 60

Query: 61  DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 120
           DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA
Sbjct: 61  DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 120

Query: 121 IAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE 180
           IAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE
Sbjct: 121 IAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE 180

Query: 181 KLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI 240
           KLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI
Sbjct: 181 KLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI 240

Query: 241 EASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTDDIVSVSGKGRLKI 300
           EASLRVDAIASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKT DIVSVSGKGRLKI
Sbjct: 241 EASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKI 300

Query: 301 GEINSTKKGKFAVELIRYV 319
           GEINSTKKGKFAVELIRYV
Sbjct: 301 GEINSTKKGKFAVELIRYV 319

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BLAST of CsGy3G019320 vs. NCBI nr
Match: XP_008456024.1 (PREDICTED: putative RNA-binding protein YlmH isoform X2 [Cucumis melo])

HSP 1 Score: 583 bits (1504), Expect = 3.52e-209
Identity = 304/319 (95.30%), Postives = 312/319 (97.81%), Query Frame = 0


Query: 1   MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKG 60
           MAAT T+I ALWSLR A+QFSSFRRPL +NLNRL F+E RFPSSPLGTSGICQLVQAVKG
Sbjct: 1   MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGICQLVQAVKG 60

Query: 61  DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 120
           DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA
Sbjct: 61  DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 120

Query: 121 IAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE 180
           IAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE
Sbjct: 121 IAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE 180

Query: 181 KLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI 240
           KLGDI++QEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI
Sbjct: 181 KLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI 240

Query: 241 EASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTDDIVSVSGKGRLKI 300
           EASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKT DIVSVSGKGRLKI
Sbjct: 241 EASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI 300

Query: 301 GEINSTKKGKFAVELIRYV 319
           GEINSTKKGKFAVELIRYV
Sbjct: 301 GEINSTKKGKFAVELIRYV 319

[Close]

BLAST of CsGy3G019320 vs. NCBI nr
Match: XP_038899605.1 (putative RNA-binding protein YlmH [Benincasa hispida])

HSP 1 Score: 555 bits (1431), Expect = 4.85e-198
Identity = 291/318 (91.51%), Postives = 303/318 (95.28%), Query Frame = 0


Query: 5   ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSP---LGTSGICQLVQAVKGD 64
           ATSI A WSLRRAAQ SSFR PLA+NLN+L F+EARFPSSP   LG+SGICQLVQAVKGD
Sbjct: 3   ATSIGARWSLRRAAQSSSFRSPLAVNLNKLSFHEARFPSSPSSPLGSSGICQLVQAVKGD 62

Query: 65  IDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAI 124
           IDVLLNGVGDKGVIVDVK ILVMAKRSLSRR VLHTNFLTPPVVKES+LA+QKLADVKAI
Sbjct: 63  IDVLLNGVGDKGVIVDVKHILVMAKRSLSRRVVLHTNFLTPPVVKESILALQKLADVKAI 122

Query: 125 AQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREK 184
           AQGGYPEAERCRISVGHADEL SDPDI+SALSITGNF FHPCSHGDFLG+ILGTGIAREK
Sbjct: 123 AQGGYPEAERCRISVGHADELLSDPDIVSALSITGNFMFHPCSHGDFLGAILGTGIAREK 182

Query: 185 LGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIE 244
           LGDI+LQEE GAQVV+VPELVDFL SSLRKVGNVTVSCTRIPLTAL+YEPPKTKTFKTIE
Sbjct: 183 LGDIILQEEKGAQVVVVPELVDFLASSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIE 242

Query: 245 ASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTDDIVSVSGKGRLKIG 304
           ASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKT DIVSVSGKGRLKIG
Sbjct: 243 ASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIG 302

Query: 305 EINSTKKGKFAVELIRYV 319
           EINSTKKGKFAVELIRYV
Sbjct: 303 EINSTKKGKFAVELIRYV 320

[Close]

BLAST of CsGy3G019320 vs. NCBI nr
Match: XP_022142743.1 (uncharacterized protein LOC111012786 isoform X1 [Momordica charantia])

HSP 1 Score: 550 bits (1418), Expect = 4.15e-196
Identity = 292/318 (91.82%), Postives = 302/318 (94.97%), Query Frame = 0


Query: 5   ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFP---SSPLGTSGICQLVQAVKGD 64
           ATSI ALWSLRRAAQ SSFR PLALNL+   F++ARFP   SSP G+SGICQLVQAVKGD
Sbjct: 3   ATSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPSSPPGSSGICQLVQAVKGD 62

Query: 65  IDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAI 124
           IDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAI
Sbjct: 63  IDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAI 122

Query: 125 AQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREK 184
           AQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREK
Sbjct: 123 AQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREK 182

Query: 185 LGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIE 244
           LGDI+LQ E GAQVV+VPELVDFLISSLRKVGNVTVSCTRIPLTAL+YEPPKTKTF TIE
Sbjct: 183 LGDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIE 242

Query: 245 ASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTDDIVSVSGKGRLKIG 304
           ASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTP+TKNGT LKT D+VSVSGKGRLKIG
Sbjct: 243 ASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG 302

Query: 305 EINSTKKGKFAVELIRYV 319
           EINSTKKGKF+VELIRYV
Sbjct: 303 EINSTKKGKFSVELIRYV 317

[Close]

BLAST of CsGy3G019320 vs. NCBI nr
Match: KAG6600381.1 (hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031043.1 ylmH [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 547 bits (1409), Expect = 1.17e-194
Identity = 285/322 (88.51%), Postives = 300/322 (93.17%), Query Frame = 0


Query: 1   MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSP---LGTSGICQLVQA 60
           MAA   SI ALWSLRRAAQ SSFR PLA+NL ++ F+EARFPSSP   LG SG+CQLVQA
Sbjct: 1   MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGI 180
           VKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGI 180

Query: 181 AREKLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTF 240
           AREKLGDI+LQEE GAQVVIVPELVDFL+SSLRKVGNVTVSCTRIPLT L+YEPPKTKTF
Sbjct: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTF 240

Query: 241 KTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTDDIVSVSGKGR 300
           KTIEASLRVDA+ASAGFKISRSKLVD IS GDVRVNWT ITKNGTILKT DIVSVSGKGR
Sbjct: 241 KTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300

Query: 301 LKIGEINSTKKGKFAVELIRYV 319
           LKIGEIN TKKGKFA+ELI+YV
Sbjct: 301 LKIGEINPTKKGKFAIELIKYV 322

[Close]

BLAST of CsGy3G019320 vs. ExPASy TrEMBL
Match: A0A0A0LC56 (S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G233470 PE=4 SV=1)

HSP 1 Score: 604 bits (1557), Expect = 1.43e-217
Identity = 317/319 (99.37%), Postives = 317/319 (99.37%), Query Frame = 0


Query: 1   MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKG 60
           MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKG
Sbjct: 1   MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKG 60

Query: 61  DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 120
           DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA
Sbjct: 61  DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 120

Query: 121 IAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE 180
           IAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE
Sbjct: 121 IAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE 180

Query: 181 KLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI 240
           KLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI
Sbjct: 181 KLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI 240

Query: 241 EASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTDDIVSVSGKGRLKI 300
           EASLRVDAIASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKT DIVSVSGKGRLKI
Sbjct: 241 EASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKI 300

Query: 301 GEINSTKKGKFAVELIRYV 319
           GEINSTKKGKFAVELIRYV
Sbjct: 301 GEINSTKKGKFAVELIRYV 319

[Close]

BLAST of CsGy3G019320 vs. ExPASy TrEMBL
Match: A0A1S3C3I2 (putative RNA-binding protein YlmH isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496076 PE=4 SV=1)

HSP 1 Score: 583 bits (1504), Expect = 1.70e-209
Identity = 304/319 (95.30%), Postives = 312/319 (97.81%), Query Frame = 0


Query: 1   MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKG 60
           MAAT T+I ALWSLR A+QFSSFRRPL +NLNRL F+E RFPSSPLGTSGICQLVQAVKG
Sbjct: 1   MAATTTTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFPSSPLGTSGICQLVQAVKG 60

Query: 61  DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 120
           DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA
Sbjct: 61  DIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 120

Query: 121 IAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE 180
           IAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE
Sbjct: 121 IAQGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE 180

Query: 181 KLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI 240
           KLGDI++QEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI
Sbjct: 181 KLGDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTI 240

Query: 241 EASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTDDIVSVSGKGRLKI 300
           EASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKT DIVSVSGKGRLKI
Sbjct: 241 EASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI 300

Query: 301 GEINSTKKGKFAVELIRYV 319
           GEINSTKKGKFAVELIRYV
Sbjct: 301 GEINSTKKGKFAVELIRYV 319

[Close]

BLAST of CsGy3G019320 vs. ExPASy TrEMBL
Match: A0A6J1CP18 (uncharacterized protein LOC111012786 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012786 PE=4 SV=1)

HSP 1 Score: 550 bits (1418), Expect = 2.01e-196
Identity = 292/318 (91.82%), Postives = 302/318 (94.97%), Query Frame = 0


Query: 5   ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFP---SSPLGTSGICQLVQAVKGD 64
           ATSI ALWSLRRAAQ SSFR PLALNL+   F++ARFP   SSP G+SGICQLVQAVKGD
Sbjct: 3   ATSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPSSPPGSSGICQLVQAVKGD 62

Query: 65  IDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAI 124
           IDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAI
Sbjct: 63  IDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAI 122

Query: 125 AQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREK 184
           AQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREK
Sbjct: 123 AQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREK 182

Query: 185 LGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIE 244
           LGDI+LQ E GAQVV+VPELVDFLISSLRKVGNVTVSCTRIPLTAL+YEPPKTKTF TIE
Sbjct: 183 LGDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIE 242

Query: 245 ASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTDDIVSVSGKGRLKIG 304
           ASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTP+TKNGT LKT D+VSVSGKGRLKIG
Sbjct: 243 ASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG 302

Query: 305 EINSTKKGKFAVELIRYV 319
           EINSTKKGKF+VELIRYV
Sbjct: 303 EINSTKKGKFSVELIRYV 317

[Close]

BLAST of CsGy3G019320 vs. ExPASy TrEMBL
Match: A0A6J1CLT4 (uncharacterized protein LOC111012786 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012786 PE=4 SV=1)

HSP 1 Score: 544 bits (1402), Expect = 5.31e-194
Identity = 291/318 (91.51%), Postives = 301/318 (94.65%), Query Frame = 0


Query: 5   ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFP---SSPLGTSGICQLVQAVKGD 64
           ATSI ALWSLRRAAQ SSFR PLALNL+   F++ARFP   SSP G+SGICQLVQAVKGD
Sbjct: 3   ATSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPSSPPGSSGICQLVQAVKGD 62

Query: 65  IDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAI 124
           IDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAI
Sbjct: 63  IDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAI 122

Query: 125 AQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREK 184
           AQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREK
Sbjct: 123 AQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREK 182

Query: 185 LGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIE 244
           LGDI+LQ E GAQVV+VPELVDFLISSLRKVGNVTVSCTRIPLTAL+YEPPKTKTF TIE
Sbjct: 183 LGDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIE 242

Query: 245 ASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTDDIVSVSGKGRLKIG 304
           ASLRVDAIASAGFKISRSKLVDLIS GDVRVNWTP+TKNGT LKT D+VSVSGKGRLKIG
Sbjct: 243 ASLRVDAIASAGFKISRSKLVDLIS-GDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG 302

Query: 305 EINSTKKGKFAVELIRYV 319
           EINSTKKGKF+VELIRYV
Sbjct: 303 EINSTKKGKFSVELIRYV 316

[Close]

BLAST of CsGy3G019320 vs. ExPASy TrEMBL
Match: A0A6J1J103 (uncharacterized protein LOC111480897 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480897 PE=4 SV=1)

HSP 1 Score: 544 bits (1402), Expect = 6.62e-194
Identity = 285/322 (88.51%), Postives = 301/322 (93.48%), Query Frame = 0


Query: 1   MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFP---SSPLGTSGICQLVQA 60
           MAA   SI ALWSLRRAAQ SS R PLA+NL+++ F+EARFP   SSPLG+SG+CQLVQA
Sbjct: 1   MAAATASIGALWSLRRAAQSSSLRTPLAVNLSKVSFHEARFPTSPSSPLGSSGMCQLVQA 60

Query: 61  VKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLAD 120
           VKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLAI+KLAD
Sbjct: 61  VKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKKLAD 120

Query: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGI 180
           VKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGI
Sbjct: 121 VKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILGTGI 180

Query: 181 AREKLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTF 240
           AREKLGDI+LQEE GAQVVIVPELVDFL+SSL KVGNVTVSCTRIPLT L+YEPPKTKTF
Sbjct: 181 AREKLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKTKTF 240

Query: 241 KTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTDDIVSVSGKGR 300
           KTIEASLRVDA+ASAGFKISRSKLVD ISSGDVRVNWT ITKNGTILKT DIVSVSGKGR
Sbjct: 241 KTIEASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSGKGR 300

Query: 301 LKIGEINSTKKGKFAVELIRYV 319
           LKIGEIN TKKGKFAVELIRYV
Sbjct: 301 LKIGEINPTKKGKFAVELIRYV 322

[Close]

BLAST of CsGy3G019320 vs. TAIR 10
Match: AT1G53120.1 (RNA-binding S4 domain-containing protein )

HSP 1 Score: 420.6 bits (1080), Expect = 1.1e-117
Identity = 217/318 (68.24%), Postives = 262/318 (82.39%), Query Frame = 0


Query: 6   TSIAALWSLRRAAQFSSFRRPLALNLNR--LCFNEARFPSSPLGTSGI--CQLVQAVKGD 65
           TS+A  W + R A F S      L+ N+  L  N +   S PL  S +  C   +A+KGD
Sbjct: 4   TSLAPPWVILRLA-FRSVAASSCLHTNQKTLITNLSIPTSFPLRQSALRRCYSAEAIKGD 63

Query: 66  IDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAI 125
           +D LL GVGD+ V  +VKQIL MA+R+ S+REVLHT+FLTPP+VKES+  ++K ADVK +
Sbjct: 64  VDFLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKESVSLLEKFADVKIV 123

Query: 126 AQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREK 185
           AQGGYPEAERCRIS+GH D LTSDPDI++ALSITGNF F PCSHGDFLG+ILGTGI+REK
Sbjct: 124 AQGGYPEAERCRISIGHPDVLTSDPDIVAALSITGNFGFQPCSHGDFLGAILGTGISREK 183

Query: 186 LGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIE 245
           LGDI++QEE GAQV+IVPELVDF++++L KVGNV V+C++IPL ALEYEPP+T +FKT+E
Sbjct: 184 LGDILIQEEKGAQVLIVPELVDFVVTALDKVGNVGVTCSKIPLLALEYEPPRTNSFKTVE 243

Query: 246 ASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTDDIVSVSGKGRLKIG 305
           ASLR+DA+ASAGFKISRSKLVDLISS DVRVNW  +TKNGTI+KT D+VSVSGKGRLKIG
Sbjct: 244 ASLRIDAVASAGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGDVVSVSGKGRLKIG 303

Query: 306 EINSTKKGKFAVELIRYV 320
           EIN TKKGKFAVE+IRY+
Sbjct: 304 EINETKKGKFAVEIIRYL 320

The following BLAST results are available for this feature:

BLAST of CsGy3G019320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P71020	2.0e-18	30.22	Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) OX=224308 GN...	[more]

BLAST of CsGy3G019320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146247.1	2.95e-217	99.37	uncharacterized protein LOC101221944 [Cucumis sativus] >XP_031738291.1 uncharact...	[more]
XP_008456024.1	3.52e-209	95.30	PREDICTED: putative RNA-binding protein YlmH isoform X2 [Cucumis melo]	[more]
XP_038899605.1	4.85e-198	91.51	putative RNA-binding protein YlmH [Benincasa hispida]	[more]
XP_022142743.1	4.15e-196	91.82	uncharacterized protein LOC111012786 isoform X1 [Momordica charantia]	[more]
KAG6600381.1	1.17e-194	88.51	hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsGy3G019320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC56	1.43e-217	99.37	S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G233...	[more]
A0A1S3C3I2	1.70e-209	95.30	putative RNA-binding protein YlmH isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1CP18	2.01e-196	91.82	uncharacterized protein LOC111012786 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CLT4	5.31e-194	91.51	uncharacterized protein LOC111012786 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1J103	6.62e-194	88.51	uncharacterized protein LOC111480897 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CsGy3G019320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53120.1	1.1e-117	68.24	RNA-binding S4 domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 244..304 e-value: 8.7E-10 score: 48.5
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 245..290 e-value: 3.2E-7 score: 30.0
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 245..299 e-value: 5.4753E-10 score: 53.0222
None	No IPR available	GENE3D	3.30.1370.160		coord: 75..137 e-value: 4.5E-5 score: 25.3
None	No IPR available	PANTHER	PTHR32219	RNA-BINDING PROTEIN YLMH-RELATED	coord: 50..319
None	No IPR available	PANTHER	PTHR32219:SF3	RNA-BINDING PROTEIN YLMH-RELATED	coord: 50..319
None	No IPR available	PROSITE	PS50889	S4	coord: 244..304 score: 13.237209
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 126..307
IPR017506	Photosystem II S4	TIGRFAM	TIGR03069	TIGR03069	coord: 77..317 e-value: 9.9E-94 score: 311.2
IPR040591	YlmH, putative RNA-binding domain	PFAM	PF17774	YlmH_RBD	coord: 150..225 e-value: 1.2E-13 score: 51.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 145..227 e-value: 8.5E-22 score: 78.8
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 236..295 e-value: 9.8E-7 score: 30.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G019320.2	CsGy3G019320.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding