CsGy3G018000 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G018000
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	LYR motif-containing protein At3g19508
Location	Gy14Chr3: 14157225 .. 14157916 (+)
RNA-Seq Expression	CsGy3G018000
Synteny	CsGy3G018000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTTGTTGGACCTCGAAGCGGAATTTGATCGGAGACAAATGGAGAAGGCGCTGAGAGTATACGGAGAAGTTTTGAGGTTAGTGCGGCAGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGTTAGAGAGAATTTCGTCAACTATAGAGAGGTCGATGCGCAGGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCCTTTGGGTTCTGAACAAGGTTTGAACTCTTAAATTCTCTAATCTTGAATTTGTTCCTTTGCTTGTTTTCTTTTCTATGGATTTGTGGATCCGGTTTTTAGGAGTTGTGGTGATTGGCAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATGGTTAGTGGTGGGGGATGAAGAGAATAGAATAGAATTGGGGGAATTCAGTAGAGGTAGGGAAATGGAGGATTGAGAGTGAAGACGTAAATTGATATGATTTGGAGTGTTGTTGGATTGGTGTAAAAATAAAGAGTGAAGAACAGAGATGGTCTATATAATTCATGTTTCTATGGATGTGTGGATCCATTTTTGTGATTTTGAATGTTGTTGGATTTGTTTTGGATTGTTGTTAAATAATGTTCTCTTCAAATTTAACGCCATGTAAACAAAACTTTTGAGAAGAATATGGAAACCATTTATTTTAGGC

mRNA sequence

GAATTTGTTGGACCTCGAAGCGGAATTTGATCGGAGACAAATGGAGAAGGCGCTGAGAGTATACGGAGAAGTTTTGAGGTTAGTGCGGCAGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGTTAGAGAGAATTTCGTCAACTATAGAGAGGTCGATGCGCAGGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCCTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATGGTTAGTGGTGGGGGATGAAGAGAATAGAATAGAATTGGGGGAATTCAGTAGAGGTAGGGAAATGGAGGATTGAGAGTGAAGACGTAAATTGATATGATTTGGAGTGTTGTTGGATTGGTGTAAAAATAAAGAGTGAAGAACAGAGATGGTCTATATAATTCATGTTTCTATGGATGTGTGGATCCATTTTTGTGATTTTGAATGTTGTTGGATTTGTTTTGGATTGTTGTTAAATAATGTTCTCTTCAAATTTAACGCCATGTAAACAAAACTTTTGAGAAGAATATGGAAACCATTTATTTTAGGC

Coding sequence (CDS)

ATGGAGAAGGCGCTGAGAGTATACGGAGAAGTTTTGAGGTTAGTGCGGCAGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGTTAGAGAGAATTTCGTCAACTATAGAGAGGTCGATGCGCAGGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCCTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATGGTTAG

Protein sequence

MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSLWVLNKYSVDGSAADKLKEICYG*

Homology

[Close]

BLAST of CsGy3G018000 vs. ExPASy Swiss-Prot
Match: Q1G3M2 (LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19508 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 7.1e-29
Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          M+K LRVYG V+RLVR LP D+RPYYAKY RENFVNYREVD Q   SL+ELF RAYNHSL
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVD-QSETSLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

[Close]

BLAST of CsGy3G018000 vs. ExPASy Swiss-Prot
Match: A9SNJ1 (LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrium patens OX=3218 GN=PHYPADRAFT_186863 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.6e-10
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 6  RVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSLWVLNK 65
          + Y EVL+LV++LP  +R YYA+Y RENFV Y EV  +D +S+  L  R ++H+ WVL K
Sbjct: 7  QAYREVLKLVKRLPPPSRGYYAQYARENFVTYSEV--EDPESIRSLLARVHHHTCWVLKK 64

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BLAST of CsGy3G018000 vs. NCBI nr
Match: XP_004140718.1 (LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 hypothetical protein Csa_011093 [Cucumis sativus])

HSP 1 Score: 170 bits (431), Expect = 2.29e-53
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYG 82
          WVLNKYSVDGSAADKLKEICYG
Sbjct: 61 WVLNKYSVDGSAADKLKEICYG 82

[Close]

BLAST of CsGy3G018000 vs. NCBI nr
Match: XP_008456173.1 (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo] >KAA0037191.1 LYR motif-containing protein [Cucumis melo var. makuwa] >TYK13881.1 LYR motif-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 163 bits (412), Expect = 1.82e-50
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 81
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

[Close]

BLAST of CsGy3G018000 vs. NCBI nr
Match: XP_038898400.1 (LYR motif-containing protein At3g19508 [Benincasa hispida])

HSP 1 Score: 159 bits (401), Expect = 8.67e-49
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALR+YGEVLRLVR+LPKD+RPYYAKY RENFVNYREVDA DAKSLEELFHRAY HSL
Sbjct: 1  MEKALRIYGEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYKHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 81
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

[Close]

BLAST of CsGy3G018000 vs. NCBI nr
Match: XP_022941949.1 (LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR motif-containing protein At3g19508 [Cucurbita pepo subsp. pepo] >KAG6600304.1 LYR motif-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030964.1 LYR motif-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153 bits (386), Expect = 1.74e-46
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALR+Y EVLRLVR+LPKD+RPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60

Query: 61 WVLNKYSVDGSAADKLKEIC 80
          WVLNKYSV+GSAADKLKEIC
Sbjct: 61 WVLNKYSVNGSAADKLKEIC 80

[Close]

BLAST of CsGy3G018000 vs. NCBI nr
Match: XP_015892821.1 (LYR motif-containing protein At3g19508 [Ziziphus jujuba])

HSP 1 Score: 152 bits (385), Expect = 2.40e-46
Identity = 70/81 (86.42%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALR+YGE+LRLVR+LPKDTRPYYAKY RENFVNYREVDA D+ +LEELFHRAYNHS+
Sbjct: 1  MEKALRIYGEILRLVRRLPKDTRPYYAKYARENFVNYREVDANDSIALEELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICY 81
          WVLNKYSVD SAADKLKE+CY
Sbjct: 61 WVLNKYSVDQSAADKLKEVCY 81

[Close]

BLAST of CsGy3G018000 vs. ExPASy TrEMBL
Match: A0A0A0L970 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199560 PE=4 SV=1)

HSP 1 Score: 170 bits (431), Expect = 1.11e-53
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYG 82
          WVLNKYSVDGSAADKLKEICYG
Sbjct: 61 WVLNKYSVDGSAADKLKEICYG 82

[Close]

BLAST of CsGy3G018000 vs. ExPASy TrEMBL
Match: A0A5A7T6G8 (LYR motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00680 PE=4 SV=1)

HSP 1 Score: 163 bits (412), Expect = 8.80e-51
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 81
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

[Close]

BLAST of CsGy3G018000 vs. ExPASy TrEMBL
Match: A0A1S3C3W4 (LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 PE=4 SV=1)

HSP 1 Score: 163 bits (412), Expect = 8.80e-51
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 81
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

[Close]

BLAST of CsGy3G018000 vs. ExPASy TrEMBL
Match: A0A6J1FPX9 (LYR motif-containing protein At3g19508 OS=Cucurbita moschata OX=3662 GN=LOC111447159 PE=4 SV=1)

HSP 1 Score: 153 bits (386), Expect = 8.41e-47
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALR+Y EVLRLVR+LPKD+RPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60

Query: 61 WVLNKYSVDGSAADKLKEIC 80
          WVLNKYSV+GSAADKLKEIC
Sbjct: 61 WVLNKYSVNGSAADKLKEIC 80

[Close]

BLAST of CsGy3G018000 vs. ExPASy TrEMBL
Match: A0A6P4A9N6 (LYR motif-containing protein At3g19508 OS=Ziziphus jujuba OX=326968 GN=LOC107427002 PE=4 SV=1)

HSP 1 Score: 152 bits (385), Expect = 1.16e-46
Identity = 70/81 (86.42%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALR+YGE+LRLVR+LPKDTRPYYAKY RENFVNYREVDA D+ +LEELFHRAYNHS+
Sbjct: 1  MEKALRIYGEILRLVRRLPKDTRPYYAKYARENFVNYREVDANDSIALEELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICY 81
          WVLNKYSVD SAADKLKE+CY
Sbjct: 61 WVLNKYSVDQSAADKLKEVCY 81

[Close]

BLAST of CsGy3G018000 vs. TAIR 10
Match: AT3G19508.1 (unknown protein; LOCATED IN: mitochondrion; Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 127.5 bits (319), Expect = 5.0e-30
Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          M+K LRVYG V+RLVR LP D+RPYYAKY RENFVNYREVD Q   SL+ELF RAYNHSL
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVD-QSETSLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

The following BLAST results are available for this feature:

BLAST of CsGy3G018000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G3M2	7.1e-29	76.54	LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
A9SNJ1	9.6e-10	50.00	LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrium patens OX=3218 G...	[more]

BLAST of CsGy3G018000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140718.1	2.29e-53	100.00	LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 hypothetica...	[more]
XP_008456173.1	1.82e-50	96.30	PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo] >KAA0037191.1 L...	[more]
XP_038898400.1	8.67e-49	92.59	LYR motif-containing protein At3g19508 [Benincasa hispida]	[more]
XP_022941949.1	1.74e-46	90.00	LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR ...	[more]
XP_015892821.1	2.40e-46	86.42	LYR motif-containing protein At3g19508 [Ziziphus jujuba]	[more]

BLAST of CsGy3G018000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L970	1.11e-53	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199560 PE=4 SV=1	[more]
A0A5A7T6G8	8.80e-51	96.30	LYR motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C3W4	8.80e-51	96.30	LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 P...	[more]
A0A6J1FPX9	8.41e-47	90.00	LYR motif-containing protein At3g19508 OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6P4A9N6	1.16e-46	86.42	LYR motif-containing protein At3g19508 OS=Ziziphus jujuba OX=326968 GN=LOC107427...	[more]

BLAST of CsGy3G018000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19508.1	5.0e-30	76.54	unknown protein; LOCATED IN: mitochondrion; Has 34 Blast hits to 34 proteins in ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 4..56 e-value: 4.2E-6 score: 26.7
None	No IPR available	PANTHER	PTHR36758	OS01G0342800 PROTEIN	coord: 1..81
None	No IPR available	CDD	cd20269	Complex1_LYR_LYRM9	coord: 4..65 e-value: 8.65506E-23 score: 80.7491

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G018000.1	CsGy3G018000.1	mRNA