CsGy3G017980 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy3G017980
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionCaspase-6 protein
LocationGy14Chr3: 14118216 .. 14118700 (-)
RNA-Seq ExpressionCsGy3G017980
SyntenyCsGy3G017980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGAAGGCCGAAGGGACATGACATTCAACGCATTTGTAGCACTGAGTTGGGAAAGAAAAGATTTAGTAGCGCCCGCCCGCCCTGCCGTGTCGTCGTGCAAACCCTCGTCTTCATCTTCCTCCAATTTTCATCATCAAAACTTAACCAACAACTCCATTGATAAAATGGCTTGGCGCTCATCTGGATCTTTATCTCGCTCCCTCATTTCCACCCTTAGGCCTTCTTCTCTCCGATCAACCCCTTCTCTTCCTCGCCTCCGCCCCCCACCTCTCCCCTCTCGTCCTGGCCTTCAATCTCGTCGCTTTTCTTTTTCCCCTTCCAGGTACTTCTCAAACTTTCTAATTTACCTTTTCTTCAAAAAAAGAGTTACTAAATTACCTGTTTGATTTCTGAGGAAGAAATGCAGTTGAAATTTTTGACGATGTATTTGGATGCTAGATTCTGTTGCCGCGTTCGAATCATGATTTTTTTTGCTTGAAAT

mRNA sequence

ATGGGTGAAGGCCGAAGGGACATGACATTCAACGCATTTGTAGCACTGAGTTGGGAAAGAAAAGATTTAGTAGCGCCCGCCCGCCCTGCCGTGTCGTCGTGCAAACCCTCGTCTTCATCTTCCTCCAATTTTCATCATCAAAACTTAACCAACAACTCCATTGATAAAATGGCTTGGCGCTCATCTGGATCTTTATCTCGCTCCCTCATTTCCACCCTTAGGCCTTCTTCTCTCCGATCAACCCCTTCTCTTCCTCGCCTCCGCCCCCCACCTCTCCCCTCTCGTCCTGGCCTTCAATCTCGTCGCTTTTCTTTTTCCCCTTCCAGATTCTGTTGCCGCGTTCGAATCATGATTTTTTTTGCTTGAAAT

Coding sequence (CDS)

ATGGGTGAAGGCCGAAGGGACATGACATTCAACGCATTTGTAGCACTGAGTTGGGAAAGAAAAGATTTAGTAGCGCCCGCCCGCCCTGCCGTGTCGTCGTGCAAACCCTCGTCTTCATCTTCCTCCAATTTTCATCATCAAAACTTAACCAACAACTCCATTGATAAAATGGCTTGGCGCTCATCTGGATCTTTATCTCGCTCCCTCATTTCCACCCTTAGGCCTTCTTCTCTCCGATCAACCCCTTCTCTTCCTCGCCTCCGCCCCCCACCTCTCCCCTCTCGTCCTGGCCTTCAATCTCGTCGCTTTTCTTTTTCCCCTTCCAGATTCTGTTGCCGCGTTCGAATCATGATTTTTTTTGCTTGA

Protein sequence

MGEGRRDMTFNAFVALSWERKDLVAPARPAVSSCKPSSSSSSNFHHQNLTNNSIDKMAWRSSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSRFCCRVRIMIFFA*
Homology
BLAST of CsGy3G017980 vs. NCBI nr
Match: KAE8650495.1 (hypothetical protein Csa_009775 [Cucumis sativus])

HSP 1 Score: 210 bits (534), Expect = 1.77e-67
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0

Query: 1   MGEGRRDMTFNAFVALSWERKDLVAPARPAVSSCKPSSSSSSNFHHQNLTNNSIDKMAWR 60
           MGEGRRDMTFNAFVALSWERKDLVAPARPAVSSCKPSSSSSSNFHHQNLTNNSIDKMAWR
Sbjct: 1   MGEGRRDMTFNAFVALSWERKDLVAPARPAVSSCKPSSSSSSNFHHQNLTNNSIDKMAWR 60

Query: 61  SSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 109
           SSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR
Sbjct: 61  SSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 109

BLAST of CsGy3G017980 vs. NCBI nr
Match: XP_004140722.1 (uncharacterized protein LOC101202763 isoform X3 [Cucumis sativus])

HSP 1 Score: 195 bits (496), Expect = 8.68e-62
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query: 8   MTFNAFVALSWERKDLVAPARPAVSSCKPSSSSSSNFHHQNLTNNSIDKMAWRSSGSLSR 67
           MTFNAFVALSWERKDLVAPARPAVSSCKPSSSSSSNFHHQNLTNNSIDKMAWRSSGSLSR
Sbjct: 1   MTFNAFVALSWERKDLVAPARPAVSSCKPSSSSSSNFHHQNLTNNSIDKMAWRSSGSLSR 60

Query: 68  SLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 109
           SLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR
Sbjct: 61  SLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 102

BLAST of CsGy3G017980 vs. NCBI nr
Match: XP_004140721.1 (uncharacterized protein LOC101202763 isoform X2 [Cucumis sativus])

HSP 1 Score: 195 bits (496), Expect = 1.02e-61
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query: 8   MTFNAFVALSWERKDLVAPARPAVSSCKPSSSSSSNFHHQNLTNNSIDKMAWRSSGSLSR 67
           MTFNAFVALSWERKDLVAPARPAVSSCKPSSSSSSNFHHQNLTNNSIDKMAWRSSGSLSR
Sbjct: 1   MTFNAFVALSWERKDLVAPARPAVSSCKPSSSSSSNFHHQNLTNNSIDKMAWRSSGSLSR 60

Query: 68  SLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 109
           SLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR
Sbjct: 61  SLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 102

BLAST of CsGy3G017980 vs. NCBI nr
Match: XP_004140720.1 (uncharacterized protein LOC101202763 isoform X1 [Cucumis sativus])

HSP 1 Score: 195 bits (496), Expect = 1.13e-61
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query: 8   MTFNAFVALSWERKDLVAPARPAVSSCKPSSSSSSNFHHQNLTNNSIDKMAWRSSGSLSR 67
           MTFNAFVALSWERKDLVAPARPAVSSCKPSSSSSSNFHHQNLTNNSIDKMAWRSSGSLSR
Sbjct: 1   MTFNAFVALSWERKDLVAPARPAVSSCKPSSSSSSNFHHQNLTNNSIDKMAWRSSGSLSR 60

Query: 68  SLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 109
           SLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR
Sbjct: 61  SLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 102

BLAST of CsGy3G017980 vs. NCBI nr
Match: XP_022983447.1 (uncharacterized protein LOC111482036 isoform X3 [Cucurbita maxima])

HSP 1 Score: 80.9 bits (198), Expect = 4.28e-17
Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 57  MAWRSSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 109
           MAWR SGSLSRSLIST+R SSLRS PSLPRLRPPPL +RP LQSRR SFS SR
Sbjct: 1   MAWRPSGSLSRSLISTVRASSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSR 53

BLAST of CsGy3G017980 vs. ExPASy TrEMBL
Match: A0A0A0LBV2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199040 PE=4 SV=1)

HSP 1 Score: 210 bits (534), Expect = 1.11e-67
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0

Query: 1   MGEGRRDMTFNAFVALSWERKDLVAPARPAVSSCKPSSSSSSNFHHQNLTNNSIDKMAWR 60
           MGEGRRDMTFNAFVALSWERKDLVAPARPAVSSCKPSSSSSSNFHHQNLTNNSIDKMAWR
Sbjct: 1   MGEGRRDMTFNAFVALSWERKDLVAPARPAVSSCKPSSSSSSNFHHQNLTNNSIDKMAWR 60

Query: 61  SSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 109
           SSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR
Sbjct: 61  SSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 109

BLAST of CsGy3G017980 vs. ExPASy TrEMBL
Match: A0A6J1IZB9 (uncharacterized protein LOC111482036 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111482036 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.07e-17
Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 57  MAWRSSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 109
           MAWR SGSLSRSLIST+R SSLRS PSLPRLRPPPL +RP LQSRR SFS SR
Sbjct: 1   MAWRPSGSLSRSLISTVRASSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSR 53

BLAST of CsGy3G017980 vs. ExPASy TrEMBL
Match: A0A6J1J5V3 (uncharacterized protein LOC111482036 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482036 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.37e-17
Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 57  MAWRSSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 109
           MAWR SGSLSRSLIST+R SSLRS PSLPRLRPPPL +RP LQSRR SFS SR
Sbjct: 1   MAWRPSGSLSRSLISTVRASSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSR 53

BLAST of CsGy3G017980 vs. ExPASy TrEMBL
Match: A0A6J1J270 (uncharacterized protein LOC111482036 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482036 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.44e-17
Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 57  MAWRSSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 109
           MAWR SGSLSRSLIST+R SSLRS PSLPRLRPPPL +RP LQSRR SFS SR
Sbjct: 1   MAWRPSGSLSRSLISTVRASSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSR 53

BLAST of CsGy3G017980 vs. ExPASy TrEMBL
Match: A0A6J1FLG9 (uncharacterized protein LOC111446884 isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111446884 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.18e-16
Identity = 43/53 (81.13%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 57  MAWRSSGSLSRSLISTLRPSSLRSTPSLPRLRPPPLPSRPGLQSRRFSFSPSR 109
           MAWR SGSLSRSLIST+R SSLRS PSLPRL PPPL +RP LQSRR SFS SR
Sbjct: 1   MAWRPSGSLSRSLISTVRASSLRSAPSLPRLHPPPLAARPRLQSRRLSFSTSR 53

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8650495.11.77e-67100.00hypothetical protein Csa_009775 [Cucumis sativus][more]
XP_004140722.18.68e-62100.00uncharacterized protein LOC101202763 isoform X3 [Cucumis sativus][more]
XP_004140721.11.02e-61100.00uncharacterized protein LOC101202763 isoform X2 [Cucumis sativus][more]
XP_004140720.11.13e-61100.00uncharacterized protein LOC101202763 isoform X1 [Cucumis sativus][more]
XP_022983447.14.28e-1783.02uncharacterized protein LOC111482036 isoform X3 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A0A0LBV21.11e-67100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199040 PE=4 SV=1[more]
A0A6J1IZB92.07e-1783.02uncharacterized protein LOC111482036 isoform X3 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1J5V32.37e-1783.02uncharacterized protein LOC111482036 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1J2703.44e-1783.02uncharacterized protein LOC111482036 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1FLG91.18e-1681.13uncharacterized protein LOC111446884 isoform X4 OS=Cucurbita moschata OX=3662 GN... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..49

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G017980.2CsGy3G017980.2mRNA