CsGy3G017420 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G017420
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Pentatricopeptide repeat-containing protein
Location	Gy14Chr3: 13394748 .. 13397330 (+)
RNA-Seq Expression	CsGy3G017420
Synteny	CsGy3G017420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTGAGATATTTGGGGGCAATTTTCCGTAGAAAAATTGGGAATGCTAATCATTTTCACTTCGATGACACACTCTCTAGCCCAAGCAACGCTCTCGTCCTTCTTGGCTTCCTACCGGTAAGCTCTCCCTTTCTCCTTATCTCTATTTCTCTCAACTTTCGTGCTTGGTTACTGAGAAAAATTCAAAAAGAAAACGAGAAATTTGTTCTTATATACGAAGTATGCTTTGTGTGGACGATGAAATTTATTCATTTCCTTGAATAGCGATTTCGTGTTTTGCCTGGTTCCTCCTAGAGCTGGAAATTTTGATTTAAATTCGTTGAAATCTATTGACATTTGATCTCATTTGCTGGTTCAGGATGCTTACTTTAGTTTACACTTTTCCAGTCACGTCCAAAAGGATAGAATCTGTAAATTTTTCCTGGTGTCCAAGCAGCTCGGTTGTAAGTCTTCTCGTCAGTTACTTCGCTGCTAGCGATGATAAACGGAAATTGGGTTTAATTTTTACGCAATTCCTGAAATTTTCTTTCACTTCTTACCCAAGAGTTATTTTGTAGGTATGCGCTGCAAAGGGTCCACGGCCGAGATATCCTCGGGTTTGGAAAACCAAAAAGAGGATCGGGACTATATCCAAGGCAGCAAAACTTGTTGATTGTGTAAGCTCTCTTGTTCCTGTCTCACCAATCCTATATATCCTCCATCCATAAGTAGGGTGACATGATGCCTATTCAAATTGGATTTTCATAGTAGAAAATCTTTTCTTTCATCTTCATTGGGGGTATATTTGGGATGCATTTTCAGACTTTTGGAATTATTTTTGACAGCATAACCAAACATCAAGCAAATTTTAAATAGTACTTTTGATTTCCAACATAAATTTTCACCATATTTAAATTCAACACCAAAGTCACCCTTAATGTAATGCAGTCTCTTTTTATTTGTTATATGATGTAACTCTAAATTTACCTTCATTCATGAGCTTGAGCTTTTGGTTTCAATGGGTGATTTAACATGGTATCTAAGTGGATGGTCTAGGTGATCCTCTATTCAAATCCATGCAACATTAGTTCCTTTTCAATCAATATGTTAGTTCCTTTTCAATTAATATTGATTTTCACTTGTTCGATAGTCTATATATTTCAAGCCACAAGTGAGGGGAGTGTTAGATGGAAAATTCAATGATCTAACATTGCTTCTTGTTGCTACTTTTGAACTTGTTAACTTCTGGGTCGACCTTTTTAAGTACTGACTTCGCATTTTAGGTAAAGGGACTGTCTAACGTCAAAGAGGAAGTCTATGGGGCTCTTGATTCCTTCATTGCCTGGGAACTAGAGTTTCCTCTTATTACAGTTAAGAAAGCCCTGAAGACCTTAGAGAACCAAAGAGAATGGAAGAGGATAATTCAGGTACATTCTTACATGTTTCTTTCATGTCCATTCTTGCTCTGCCCTTTTGTCCTGAGGATGTTGCTGACGAAATGAGTTAAGCAAAATGAGTATACTATTGTAGTTGACGAAATGGATGCTAAGTAAAGGCCAGGGAAGAACAATGGGAAGCTATTTTACACTATTAAACGCATTAGCTGAAGATGGAAGACTTGATGAAGCTGAAGAGCTTTGGAACAAATTGTTTTCTCAGCATCTGGAGAGCATTCCTCGCATATTCTTTCATAAAATGATATCCCTCTACTACGATCAGGCAATGCATGACAAGTTGTTTGAGGTATTTCGTTTTATTGCTACAGAAGTAGTTTCAACTGCATTGGTCACAAATCTCTAACCATTCCTTCCACTCCATATTGATTAAAAAAGGGATAAAAGTTATGATACATGGTGCCGATATATCATTTTTAGTTCAATCATATTGAGTTCCATGGGTAACGAAATTTAACTATGATTGACTTAGGTATTTGCTGATATGGAGGAACTTGGAGTTCAGCCAAATATGGCAATTGTCACTAAGGTTGGAAACGTTTTCCAAGAGTTGGGTATGCTCGATAAATACAAAAAACTGATGAAGAAATATCCCCCACCGAAATGGGAATATCGTTACATCAAAGGAAAACGCGTCAAAATACGAGCTAAGTATCTGTCTGAAAATGGTAATTCAAACAATGGTTTAAGTGAGCATGCCAAAATGGAGCATAGTTCAACAAATTCAATAGATGAAGCTGAAATAACTTCCGAAGATTCCAGTCTCGAAGATGATGAGGATATGAGCGAAGATCCAGATGAAATTCTGGAAGATGAACATATGTGGAGCAAATCCAATTTTGAGCATGATTTCATGGGGCTTGGGCAATTGTAAATATATACACATTGTAGTTCCTTGTCGAAGTTTGTCATAGCGTAGACTTTTATATCAGTTATTATTTGTAGTTTTAATAGACGAGATGACACATTGATCATAGAGCCAATTCCCTTTATTTCATCCTTGAATATTATAGTCCCCGATCCAACATATGGCCTAGGCTTATGATGAAACAAGGGAACAATTCTTGGTTTAAAATTTTCATTAACAAAATATACGAACGTGGTCTTATAACTCATGAGGAAAAAAAAGGTTGCTGGTAAAGTGAAATGC

mRNA sequence

GTTTTGAGATATTTGGGGGCAATTTTCCGTAGAAAAATTGGGAATGCTAATCATTTTCACTTCGATGACACACTCTCTAGCCCAAGCAACGCTCTCGTCCTTCTTGGCTTCCTACCGGATGCTTACTTTAGTTTACACTTTTCCAGTCACGTCCAAAAGGATAGAATCTGTAAATTTTTCCTGGTGTCCAAGCAGCTCGGTTGTATGCGCTGCAAAGGGTCCACGGCCGAGATATCCTCGGGTTTGGAAAACCAAAAAGAGGATCGGGACTATATCCAAGGCAGCAAAACTTGTTGATTGTGTAAAGGGACTGTCTAACGTCAAAGAGGAAGTCTATGGGGCTCTTGATTCCTTCATTGCCTGGGAACTAGAGTTTCCTCTTATTACAGTTAAGAAAGCCCTGAAGACCTTAGAGAACCAAAGAGAATGGAAGAGGATAATTCAGTTGACGAAATGGATGCTAAGTAAAGGCCAGGGAAGAACAATGGGAAGCTATTTTACACTATTAAACGCATTAGCTGAAGATGGAAGACTTGATGAAGCTGAAGAGCTTTGGAACAAATTGTTTTCTCAGCATCTGGAGAGCATTCCTCGCATATTCTTTCATAAAATGATATCCCTCTACTACGATCAGGCAATGCATGACAAGTTGTTTGAGGTATTTGCTGATATGGAGGAACTTGGAGTTCAGCCAAATATGGCAATTGTCACTAAGGTTGGAAACGTTTTCCAAGAGTTGGGTATGCTCGATAAATACAAAAAACTGATGAAGAAATATCCCCCACCGAAATGGGAATATCGTTACATCAAAGGAAAACGCGTCAAAATACGAGCTAAGTATCTGTCTGAAAATGGTAATTCAAACAATGGTTTAAGTGAGCATGCCAAAATGGAGCATAGTTCAACAAATTCAATAGATGAAGCTGAAATAACTTCCGAAGATTCCAGTCTCGAAGATGATGAGGATATGAGCGAAGATCCAGATGAAATTCTGGAAGATGAACATATGTGGAGCAAATCCAATTTTGAGCATGATTTCATGGGGCTTGGGCAATTGTAAATATATACACATTGTAGTTCCTTGTCGAAGTTTGTCATAGCGTAGACTTTTATATCAGTTATTATTTGTAGTTTTAATAGACGAGATGACACATTGATCATAGAGCCAATTCCCTTTATTTCATCCTTGAATATTATAGTCCCCGATCCAACATATGGCCTAGGCTTATGATGAAACAAGGGAACAATTCTTGGTTTAAAATTTTCATTAACAAAATATACGAACGTGGTCTTATAACTCATGAGGAAAAAAAAGGTTGCTGGTAAAGTGAAATGC

Coding sequence (CDS)

ATGCTAATCATTTTCACTTCGATGACACACTCTCTAGCCCAAGCAACGCTCTCGTCCTTCTTGGCTTCCTACCGGATGCTTACTTTAGTTTACACTTTTCCAGTCACGTCCAAAAGGATAGAATCTGTAAATTTTTCCTGGTGTCCAAGCAGCTCGGTTGTATGCGCTGCAAAGGGTCCACGGCCGAGATATCCTCGGGTTTGGAAAACCAAAAAGAGGATCGGGACTATATCCAAGGCAGCAAAACTTGTTGATTGTGTAAAGGGACTGTCTAACGTCAAAGAGGAAGTCTATGGGGCTCTTGATTCCTTCATTGCCTGGGAACTAGAGTTTCCTCTTATTACAGTTAAGAAAGCCCTGAAGACCTTAGAGAACCAAAGAGAATGGAAGAGGATAATTCAGTTGACGAAATGGATGCTAAGTAAAGGCCAGGGAAGAACAATGGGAAGCTATTTTACACTATTAAACGCATTAGCTGAAGATGGAAGACTTGATGAAGCTGAAGAGCTTTGGAACAAATTGTTTTCTCAGCATCTGGAGAGCATTCCTCGCATATTCTTTCATAAAATGATATCCCTCTACTACGATCAGGCAATGCATGACAAGTTGTTTGAGGTATTTGCTGATATGGAGGAACTTGGAGTTCAGCCAAATATGGCAATTGTCACTAAGGTTGGAAACGTTTTCCAAGAGTTGGGTATGCTCGATAAATACAAAAAACTGATGAAGAAATATCCCCCACCGAAATGGGAATATCGTTACATCAAAGGAAAACGCGTCAAAATACGAGCTAAGTATCTGTCTGAAAATGGTAATTCAAACAATGGTTTAAGTGAGCATGCCAAAATGGAGCATAGTTCAACAAATTCAATAGATGAAGCTGAAATAACTTCCGAAGATTCCAGTCTCGAAGATGATGAGGATATGAGCGAAGATCCAGATGAAATTCTGGAAGATGAACATATGTGGAGCAAATCCAATTTTGAGCATGATTTCATGGGGCTTGGGCAATTGTAA

Protein sequence

MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMWSKSNFEHDFMGLGQL*

Homology

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BLAST of CsGy3G017420 vs. ExPASy Swiss-Prot
Match: Q8LG95 (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX=3702 GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 4.8e-100
Identity = 193/293 (65.87%), Postives = 236/293 (80.55%), Query Frame = 0


Query: 26  MLTLVYTFP---VTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAK 85
           ML+L Y+ P   + ++   +  F+  P++ VVCAA+GPRPR PRVWKT+KRIGTISKAAK
Sbjct: 1   MLSLRYSLPYLLLQTRESSTKLFTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60

Query: 86  LVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSK 145
           ++ C+KGLSNVKEEVYGALDSFIAWELEFPL+ VKKAL  LE+++EWK+IIQ+TKWMLSK
Sbjct: 61  MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 146 GQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDK 205
           GQGRTMG+YF+LLNALAED RLDEAEELWNKLF +HLE  PR FF+KMIS+YY + MH K
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 206 LFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKI 265
           LFEVFADMEELGV+PN+AIV+ VG VF +L M DKY+KLMKKYPPP+WE+RYIKG+RVK+
Sbjct: 181 LFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKV 240

Query: 266 RAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDE 316
           +AK L+E      GLS       S  + ID  EI SE+   ED ED+SE+ ++
Sbjct: 241 KAKQLNELSEGEGGLS-------SDEDKIDN-EIESEE---EDGEDLSEEEED 282

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BLAST of CsGy3G017420 vs. ExPASy Swiss-Prot
Match: Q2V3H0 (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 185.3 bits (469), Expect = 1.2e-45
Identity = 96/204 (47.06%), Postives = 131/204 (64.22%), Query Frame = 0


Query: 67  VWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ 126
           +WK     G+  KA  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L  +
Sbjct: 85  LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144

Query: 127 REWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIF 186
            +W R+IQL KWMLSKGQG TMG+Y  LL A   D R DEAE LWN +   H  SIPR  
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204

Query: 187 FHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYP 246
           F +MI+LY    +HDK+ EVFADMEEL V P+     +V   F+EL   +  K ++++Y 
Sbjct: 205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRY- 264

Query: 247 PPKWEYRYIKGKRVKIRAKYLSEN 271
             +++Y Y  G+RV+++ +Y SE+
Sbjct: 265 LSEYKYIYFNGERVRVK-RYFSED 286

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BLAST of CsGy3G017420 vs. NCBI nr
Match: XP_004140747.2 (pentatricopeptide repeat-containing protein At4g21190 [Cucumis sativus] >KGN57423.1 hypothetical protein Csa_010957 [Cucumis sativus])

HSP 1 Score: 663 bits (1710), Expect = 6.16e-240
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0


Query: 1   MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60
           MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP
Sbjct: 1   MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60

Query: 61  RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120
           RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL
Sbjct: 61  RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120

Query: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE 180
           KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE
Sbjct: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE 180

Query: 181 SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK 240
           SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK
Sbjct: 181 SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK 240

Query: 241 LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSED 300
           LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSED
Sbjct: 241 LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSED 300

Query: 301 SSLEDDEDMSEDPDEILEDEHMWSKSNFEHDFMGLGQL 338
           SSLEDDEDMSEDPDEILEDEHMWSKSNFEHDFMGLGQL
Sbjct: 301 SSLEDDEDMSEDPDEILEDEHMWSKSNFEHDFMGLGQL 338

[Close]

BLAST of CsGy3G017420 vs. NCBI nr
Match: XP_008439301.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g21190 isoform X2 [Cucumis melo])

HSP 1 Score: 628 bits (1620), Expect = 3.21e-226
Identity = 318/338 (94.08%), Postives = 329/338 (97.34%), Query Frame = 0


Query: 1   MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60
           M IIFTSMTH LAQATL+SF ASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP
Sbjct: 1   MRIIFTSMTHYLAQATLASFSASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60

Query: 61  RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120
           RPRYPRVWKT+KRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL
Sbjct: 61  RPRYPRVWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120

Query: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE 180
           KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LE
Sbjct: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLE 180

Query: 181 SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK 240
           S+PRIFFHKMISLYYD+AMHDKLFEVFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+K
Sbjct: 181 SMPRIFFHKMISLYYDRAMHDKLFEVFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEK 240

Query: 241 LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSED 300
           LMKKYPPPKWEYRYIKGKRVKIR KYLSENGNS NGLSE  KMEHSSTNS+DEAEITSED
Sbjct: 241 LMKKYPPPKWEYRYIKGKRVKIRTKYLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSED 300

Query: 301 SSLEDDEDMSEDPDEILEDEHMWSKSNFEHDFMGLGQL 338
           SSLEDDE++ +DPDEILEDEHMWSKSNFEHDFMGLGQL
Sbjct: 301 SSLEDDEEIGKDPDEILEDEHMWSKSNFEHDFMGLGQL 338

[Close]

BLAST of CsGy3G017420 vs. NCBI nr
Match: TYK23004.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 621 bits (1601), Expect = 1.95e-223
Identity = 312/331 (94.26%), Postives = 323/331 (97.58%), Query Frame = 0


Query: 8   MTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV 67
           MTH LAQATL+SF ASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV
Sbjct: 1   MTHYLAQATLASFSASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV 60

Query: 68  WKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR 127
           WKT+KRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR
Sbjct: 61  WKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR 120

Query: 128 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFF 187
           EWKRIIQLTKWMLSKGQGRTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LES+PRIFF
Sbjct: 121 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFF 180

Query: 188 HKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPP 247
           HKMISLYYD+AMHDKLFEVFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+KLMKKYPP
Sbjct: 181 HKMISLYYDRAMHDKLFEVFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPP 240

Query: 248 PKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDE 307
           PKWEYRYIKGKRVKIR KYLSENGNS NGLSE  KMEHSSTNS+DEAEITSEDSSLEDDE
Sbjct: 241 PKWEYRYIKGKRVKIRTKYLSENGNSKNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDE 300

Query: 308 DMSEDPDEILEDEHMWSKSNFEHDFMGLGQL 338
           ++ +DPDEILEDEHMWSKSNFEHDFMGLGQL
Sbjct: 301 EIGKDPDEILEDEHMWSKSNFEHDFMGLGQL 331

[Close]

BLAST of CsGy3G017420 vs. NCBI nr
Match: KAA0033710.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 620 bits (1599), Expect = 3.93e-223
Identity = 312/331 (94.26%), Postives = 323/331 (97.58%), Query Frame = 0


Query: 8   MTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV 67
           MTH LAQATL+SF ASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV
Sbjct: 1   MTHYLAQATLASFSASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV 60

Query: 68  WKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR 127
           WKT+KRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR
Sbjct: 61  WKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR 120

Query: 128 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFF 187
           EWKRIIQLTKWMLSKGQGRTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LES+PRIFF
Sbjct: 121 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFF 180

Query: 188 HKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPP 247
           HKMISLYYD+AMHDKLFEVFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+KLMKKYPP
Sbjct: 181 HKMISLYYDRAMHDKLFEVFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPP 240

Query: 248 PKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDE 307
           PKWEYRYIKGKRVKIR KYLSENGNS NGLSE  KMEHSSTNS+DEAEITSEDSSLEDDE
Sbjct: 241 PKWEYRYIKGKRVKIRTKYLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDE 300

Query: 308 DMSEDPDEILEDEHMWSKSNFEHDFMGLGQL 338
           ++ +DPDEILEDEHMWSKSNFEHDFMGLGQL
Sbjct: 301 EIGKDPDEILEDEHMWSKSNFEHDFMGLGQL 331

[Close]

BLAST of CsGy3G017420 vs. NCBI nr
Match: XP_016899030.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g21190 isoform X1 [Cucumis melo])

HSP 1 Score: 597 bits (1540), Expect = 8.99e-214
Identity = 298/315 (94.60%), Postives = 309/315 (98.10%), Query Frame = 0


Query: 24  YRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKL 83
           +RMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKT+KRIGTISKAAKL
Sbjct: 40  FRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKL 99

Query: 84  VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG 143
           VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG
Sbjct: 100 VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG 159

Query: 144 QGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKL 203
           QGRTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LES+PRIFFHKMISLYYD+AMHDKL
Sbjct: 160 QGRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFFHKMISLYYDRAMHDKL 219

Query: 204 FEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIR 263
           FEVFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+KLMKKYPPPKWEYRYIKGKRVKIR
Sbjct: 220 FEVFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPPPKWEYRYIKGKRVKIR 279

Query: 264 AKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMW 323
            KYLSENGNS NGLSE  KMEHSSTNS+DEAEITSEDSSLEDDE++ +DPDEILEDEHMW
Sbjct: 280 TKYLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDEEIGKDPDEILEDEHMW 339

Query: 324 SKSNFEHDFMGLGQL 338
           SKSNFEHDFMGLGQL
Sbjct: 340 SKSNFEHDFMGLGQL 354

[Close]

BLAST of CsGy3G017420 vs. ExPASy TrEMBL
Match: A0A0A0L6Q9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G184050 PE=4 SV=1)

HSP 1 Score: 663 bits (1710), Expect = 2.98e-240
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0


Query: 1   MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60
           MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP
Sbjct: 1   MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60

Query: 61  RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120
           RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL
Sbjct: 61  RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120

Query: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE 180
           KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE
Sbjct: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE 180

Query: 181 SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK 240
           SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK
Sbjct: 181 SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK 240

Query: 241 LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSED 300
           LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSED
Sbjct: 241 LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSED 300

Query: 301 SSLEDDEDMSEDPDEILEDEHMWSKSNFEHDFMGLGQL 338
           SSLEDDEDMSEDPDEILEDEHMWSKSNFEHDFMGLGQL
Sbjct: 301 SSLEDDEDMSEDPDEILEDEHMWSKSNFEHDFMGLGQL 338

[Close]

BLAST of CsGy3G017420 vs. ExPASy TrEMBL
Match: A0A1S3AY30 (pentatricopeptide repeat-containing protein At4g21190 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484127 PE=4 SV=1)

HSP 1 Score: 628 bits (1620), Expect = 1.56e-226
Identity = 318/338 (94.08%), Postives = 329/338 (97.34%), Query Frame = 0


Query: 1   MLIIFTSMTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60
           M IIFTSMTH LAQATL+SF ASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP
Sbjct: 1   MRIIFTSMTHYLAQATLASFSASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGP 60

Query: 61  RPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120
           RPRYPRVWKT+KRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL
Sbjct: 61  RPRYPRVWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL 120

Query: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLE 180
           KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LE
Sbjct: 121 KTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLE 180

Query: 181 SIPRIFFHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKK 240
           S+PRIFFHKMISLYYD+AMHDKLFEVFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+K
Sbjct: 181 SMPRIFFHKMISLYYDRAMHDKLFEVFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEK 240

Query: 241 LMKKYPPPKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSED 300
           LMKKYPPPKWEYRYIKGKRVKIR KYLSENGNS NGLSE  KMEHSSTNS+DEAEITSED
Sbjct: 241 LMKKYPPPKWEYRYIKGKRVKIRTKYLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSED 300

Query: 301 SSLEDDEDMSEDPDEILEDEHMWSKSNFEHDFMGLGQL 338
           SSLEDDE++ +DPDEILEDEHMWSKSNFEHDFMGLGQL
Sbjct: 301 SSLEDDEEIGKDPDEILEDEHMWSKSNFEHDFMGLGQL 338

[Close]

BLAST of CsGy3G017420 vs. ExPASy TrEMBL
Match: A0A5D3DHA7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G001120 PE=4 SV=1)

HSP 1 Score: 621 bits (1601), Expect = 9.42e-224
Identity = 312/331 (94.26%), Postives = 323/331 (97.58%), Query Frame = 0


Query: 8   MTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV 67
           MTH LAQATL+SF ASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV
Sbjct: 1   MTHYLAQATLASFSASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV 60

Query: 68  WKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR 127
           WKT+KRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR
Sbjct: 61  WKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR 120

Query: 128 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFF 187
           EWKRIIQLTKWMLSKGQGRTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LES+PRIFF
Sbjct: 121 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFF 180

Query: 188 HKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPP 247
           HKMISLYYD+AMHDKLFEVFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+KLMKKYPP
Sbjct: 181 HKMISLYYDRAMHDKLFEVFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPP 240

Query: 248 PKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDE 307
           PKWEYRYIKGKRVKIR KYLSENGNS NGLSE  KMEHSSTNS+DEAEITSEDSSLEDDE
Sbjct: 241 PKWEYRYIKGKRVKIRTKYLSENGNSKNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDE 300

Query: 308 DMSEDPDEILEDEHMWSKSNFEHDFMGLGQL 338
           ++ +DPDEILEDEHMWSKSNFEHDFMGLGQL
Sbjct: 301 EIGKDPDEILEDEHMWSKSNFEHDFMGLGQL 331

[Close]

BLAST of CsGy3G017420 vs. ExPASy TrEMBL
Match: A0A5A7SS06 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001830 PE=4 SV=1)

HSP 1 Score: 620 bits (1599), Expect = 1.90e-223
Identity = 312/331 (94.26%), Postives = 323/331 (97.58%), Query Frame = 0


Query: 8   MTHSLAQATLSSFLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV 67
           MTH LAQATL+SF ASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV
Sbjct: 1   MTHYLAQATLASFSASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRV 60

Query: 68  WKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR 127
           WKT+KRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR
Sbjct: 61  WKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQR 120

Query: 128 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFF 187
           EWKRIIQLTKWMLSKGQGRTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LES+PRIFF
Sbjct: 121 EWKRIIQLTKWMLSKGQGRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFF 180

Query: 188 HKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPP 247
           HKMISLYYD+AMHDKLFEVFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+KLMKKYPP
Sbjct: 181 HKMISLYYDRAMHDKLFEVFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPP 240

Query: 248 PKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDE 307
           PKWEYRYIKGKRVKIR KYLSENGNS NGLSE  KMEHSSTNS+DEAEITSEDSSLEDDE
Sbjct: 241 PKWEYRYIKGKRVKIRTKYLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDE 300

Query: 308 DMSEDPDEILEDEHMWSKSNFEHDFMGLGQL 338
           ++ +DPDEILEDEHMWSKSNFEHDFMGLGQL
Sbjct: 301 EIGKDPDEILEDEHMWSKSNFEHDFMGLGQL 331

[Close]

BLAST of CsGy3G017420 vs. ExPASy TrEMBL
Match: A0A1S4DTK8 (pentatricopeptide repeat-containing protein At4g21190 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484127 PE=4 SV=1)

HSP 1 Score: 597 bits (1540), Expect = 4.35e-214
Identity = 298/315 (94.60%), Postives = 309/315 (98.10%), Query Frame = 0


Query: 24  YRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKL 83
           +RMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKT+KRIGTISKAAKL
Sbjct: 40  FRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKL 99

Query: 84  VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG 143
           VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG
Sbjct: 100 VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG 159

Query: 144 QGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKL 203
           QGRTMGSYFTLLNAL EDGRLDEAEELWNKLFSQ+LES+PRIFFHKMISLYYD+AMHDKL
Sbjct: 160 QGRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFFHKMISLYYDRAMHDKL 219

Query: 204 FEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIR 263
           FEVFADMEELGVQPNMAIVTKVGN+FQELGMLDKY+KLMKKYPPPKWEYRYIKGKRVKIR
Sbjct: 220 FEVFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPPPKWEYRYIKGKRVKIR 279

Query: 264 AKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDEILEDEHMW 323
            KYLSENGNS NGLSE  KMEHSSTNS+DEAEITSEDSSLEDDE++ +DPDEILEDEHMW
Sbjct: 280 TKYLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDEEIGKDPDEILEDEHMW 339

Query: 324 SKSNFEHDFMGLGQL 338
           SKSNFEHDFMGLGQL
Sbjct: 340 SKSNFEHDFMGLGQL 354

[Close]

BLAST of CsGy3G017420 vs. TAIR 10
Match: AT4G21190.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 365.9 bits (938), Expect = 3.4e-101
Identity = 193/293 (65.87%), Postives = 236/293 (80.55%), Query Frame = 0


Query: 26  MLTLVYTFP---VTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAK 85
           ML+L Y+ P   + ++   +  F+  P++ VVCAA+GPRPR PRVWKT+KRIGTISKAAK
Sbjct: 1   MLSLRYSLPYLLLQTRESSTKLFTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60

Query: 86  LVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSK 145
           ++ C+KGLSNVKEEVYGALDSFIAWELEFPL+ VKKAL  LE+++EWK+IIQ+TKWMLSK
Sbjct: 61  MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 146 GQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDK 205
           GQGRTMG+YF+LLNALAED RLDEAEELWNKLF +HLE  PR FF+KMIS+YY + MH K
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 206 LFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKI 265
           LFEVFADMEELGV+PN+AIV+ VG VF +L M DKY+KLMKKYPPP+WE+RYIKG+RVK+
Sbjct: 181 LFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKV 240

Query: 266 RAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDEDMSEDPDE 316
           +AK L+E      GLS       S  + ID  EI SE+   ED ED+SE+ ++
Sbjct: 241 KAKQLNELSEGEGGLS-------SDEDKIDN-EIESEE---EDGEDLSEEEED 282

[Close]

BLAST of CsGy3G017420 vs. TAIR 10
Match: AT4G18975.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 185.3 bits (469), Expect = 8.3e-47
Identity = 96/204 (47.06%), Postives = 131/204 (64.22%), Query Frame = 0


Query: 67  VWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ 126
           +WK     G+  KA  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L  +
Sbjct: 85  LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144

Query: 127 REWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIF 186
            +W R+IQL KWMLSKGQG TMG+Y  LL A   D R DEAE LWN +   H  SIPR  
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204

Query: 187 FHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYP 246
           F +MI+LY    +HDK+ EVFADMEEL V P+     +V   F+EL   +  K ++++Y 
Sbjct: 205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRY- 264

Query: 247 PPKWEYRYIKGKRVKIRAKYLSEN 271
             +++Y Y  G+RV+++ +Y SE+
Sbjct: 265 LSEYKYIYFNGERVRVK-RYFSED 286

[Close]

BLAST of CsGy3G017420 vs. TAIR 10
Match: AT4G18975.2 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 185.3 bits (469), Expect = 8.3e-47
Identity = 96/204 (47.06%), Postives = 131/204 (64.22%), Query Frame = 0


Query: 67  VWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ 126
           +WK     G+  KA  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L  +
Sbjct: 58  LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 117

Query: 127 REWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIF 186
            +W R+IQL KWMLSKGQG TMG+Y  LL A   D R DEAE LWN +   H  SIPR  
Sbjct: 118 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 177

Query: 187 FHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYP 246
           F +MI+LY    +HDK+ EVFADMEEL V P+     +V   F+EL   +  K ++++Y 
Sbjct: 178 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRY- 237

Query: 247 PPKWEYRYIKGKRVKIRAKYLSEN 271
             +++Y Y  G+RV+++ +Y SE+
Sbjct: 238 LSEYKYIYFNGERVRVK-RYFSED 259

[Close]

BLAST of CsGy3G017420 vs. TAIR 10
Match: AT4G18975.3 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 185.3 bits (469), Expect = 8.3e-47
Identity = 96/204 (47.06%), Postives = 131/204 (64.22%), Query Frame = 0


Query: 67  VWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ 126
           +WK     G+  KA  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L  +
Sbjct: 85  LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144

Query: 127 REWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIF 186
            +W R+IQL KWMLSKGQG TMG+Y  LL A   D R DEAE LWN +   H  SIPR  
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204

Query: 187 FHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYP 246
           F +MI+LY    +HDK+ EVFADMEEL V P+     +V   F+EL   +  K ++++Y 
Sbjct: 205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRY- 264

Query: 247 PPKWEYRYIKGKRVKIRAKYLSEN 271
             +++Y Y  G+RV+++ +Y SE+
Sbjct: 265 LSEYKYIYFNGERVRVK-RYFSED 286

[Close]

BLAST of CsGy3G017420 vs. TAIR 10
Match: AT4G18975.4 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 185.3 bits (469), Expect = 8.3e-47
Identity = 96/204 (47.06%), Postives = 131/204 (64.22%), Query Frame = 0


Query: 67  VWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ 126
           +WK     G+  KA  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L  +
Sbjct: 85  LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144

Query: 127 REWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIF 186
            +W R+IQL KWMLSKGQG TMG+Y  LL A   D R DEAE LWN +   H  SIPR  
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204

Query: 187 FHKMISLYYDQAMHDKLFEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYP 246
           F +MI+LY    +HDK+ EVFADMEEL V P+     +V   F+EL   +  K ++++Y 
Sbjct: 205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRY- 264

Query: 247 PPKWEYRYIKGKRVKIRAKYLSEN 271
             +++Y Y  G+RV+++ +Y SE+
Sbjct: 265 LSEYKYIYFNGERVRVK-RYFSED 286

The following BLAST results are available for this feature:

BLAST of CsGy3G017420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LG95	4.8e-100	65.87	Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX...	[more]
Q2V3H0	1.2e-45	47.06	Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidop...	[more]

BLAST of CsGy3G017420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140747.2	6.16e-240	100.00	pentatricopeptide repeat-containing protein At4g21190 [Cucumis sativus] >KGN5742...	[more]
XP_008439301.1	3.21e-226	94.08	PREDICTED: pentatricopeptide repeat-containing protein At4g21190 isoform X2 [Cuc...	[more]
TYK23004.1	1.95e-223	94.26	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
KAA0033710.1	3.93e-223	94.26	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_016899030.1	8.99e-214	94.60	PREDICTED: pentatricopeptide repeat-containing protein At4g21190 isoform X1 [Cuc...	[more]

BLAST of CsGy3G017420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6Q9	2.98e-240	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G184050 PE=4 SV=1	[more]
A0A1S3AY30	1.56e-226	94.08	pentatricopeptide repeat-containing protein At4g21190 isoform X2 OS=Cucumis melo...	[more]
A0A5D3DHA7	9.42e-224	94.26	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7SS06	1.90e-223	94.26	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S4DTK8	4.35e-214	94.60	pentatricopeptide repeat-containing protein At4g21190 isoform X1 OS=Cucumis melo...	[more]

BLAST of CsGy3G017420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21190.1	3.4e-101	65.87	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18975.1	8.3e-47	47.06	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18975.2	8.3e-47	47.06	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18975.3	8.3e-47	47.06	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18975.4	8.3e-47	47.06	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 78..253 e-value: 1.9E-15 score: 58.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 271..296
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 297..317
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 271..323
None	No IPR available	PANTHER	PTHR46782:SF1	OS01G0757700 PROTEIN	coord: 27..311
IPR044646	Pentatricopeptide repeat-containing protein EMB1417-like	PANTHER	PTHR46782	OS01G0757700 PROTEIN	coord: 27..311
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 147..181 score: 8.977363

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G017420.1	CsGy3G017420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding