CsGy3G016890 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G016890
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr3: 12987196 .. 12988992 (-)
RNA-Seq Expression	CsGy3G016890
Synteny	CsGy3G016890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTATAAAAAGTAGGTGAGGGAGAGAGGGAGAGAGGGTGAAAGGCGAGTAGGGGAAACACATGATTTTAATGTGTAGTCGCGTTTCAGAATTGGGAAAAAGGAAACGCCAAAGTCGCCAACCCTATAGCTTCTCTTCTTTCTTTGTAAAAGCGCTTCTATAAAAACCAACGTAATTAAAACCCCACCAATCCAGTACATTATATTCATATCTCCCAAACCCATCGGAAAAGTGTTTTTTCTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTATTTCTTCTTCTTTCAATTCCTCTCCCTTCAATTTTATGTTCTCATACACACCTAATTATTAAACCCATGGAATCGCATGTGCAATTCACCCAAACCGGGCCGCTTTGGACTAATGAGAAGCACATGCACTTCTTGAATTCCGTGGAAGCTTCTTTCGTCCGATCAATGTTCCAAAATCGCGCACATCGCCGCGGTCTACGGCTGGACCGCCTCTTGCCGGACACCGCTGACTCAACCCTAGATTCCCCTCATAACCACACCAAAAACCATCCCACCTCCGGTCAGTTTAATCTTACATTTTTTAAAAAAACTTTGTAATTAAAAAAAATGCTTTATTTATTTATTTATTTATTTATTTTTGTTATTGTTATTATTTTGACTAAAAAGGACCGACCAAACAACGTCTATCAAATAAGATAAAGAAAAAAAAAAGTGAGAATAGTGAATATTCCTTAGGAAGATATTTATGTATGATTTAGATATCACAAAATTATTTCTTAAATAAATAAATAAATAAATAAATCACTTTCCTCTAACTCCAAAAAGATCATTAATATTCTTTGCTTGCATTTTCCTTTTTCTTTTTTTGTTATTTATTATTTTAATTTATTTTGGGTTTGATCCAGGAAGTGCAAGAATCAACGGTAGATCTACGAGGAGATCTAGGAGGATATCATCTCCACCGTACACTTCAACTCAAGATCAGGCTAGTGCAGAAACTATATACTATAAATTTAAACATTACATTTCTTTCTTTCTTTTATCTCTACTAATAATAGAAATGACCTATTTGTTTTTGTCTTTATCTCCTTCTTTTTCCATCGAAATAATTATGCTGCCTTTTTTTTTTTGCGGCTGGTGTGGGTATTTTGGAAATGCCACGTGGATATAGATTATAAAATTAAGAAAAAAGTGATCATATCCGTAATTAAAGCATATAGCTTTGTGCTCCCACATCTAATTGGCTAAACTCTAATTATTAATTTTTTAGTAGTAAAATTGATAATAGAAAAGAGAAGAGAAGAAACTAAAAATATCTGGTTCAATTATTAAACAAAGCTCAGGAATGATGGTTATCTTGTAAAATACACAAAAAGAAGTTATAAAAAATGGTATTAATGAATGAATGAATTATAGAATTGAAATAAAAATGTGGAATGGTTTTGTGTGAAATGACAGGTGGTCCCACAGATGGAAAAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCATGTCACCTCTCAACTAGCAAATATATTCTTCTTCTTCTTCTTCTTTTAATCTTTATATCTTTTCATTTTAGTTTTTAGATCTTTAATTAATTATTGTCTGAACAAACAAACAAACACAAAGATGGGTCTAATTCAGAAATTAAGTGAATTTCAATTGGCTTACTTCATGTTCAATTTACAAGTCATATTTTACGTATGACATCATGAGGTTGAATTAATTACCATTCACCTTCAGTACTGCTTTACACATATTTTATTTTACTTGTGTTAATTACATGATTTATATT

mRNA sequence

GGTTATAAAAAGTAGGTGAGGGAGAGAGGGAGAGAGGGTGAAAGGCGAGTAGGGGAAACACATGATTTTAATGTGTAGTCGCGTTTCAGAATTGGGAAAAAGGAAACGCCAAAGTCGCCAACCCTATAGCTTCTCTTCTTTCTTTGTAAAAGCGCTTCTATAAAAACCAACGTAATTAAAACCCCACCAATCCAGTACATTATATTCATATCTCCCAAACCCATCGGAAAAGTGTTTTTTCTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTATTTCTTCTTCTTTCAATTCCTCTCCCTTCAATTTTATGTTCTCATACACACCTAATTATTAAACCCATGGAATCGCATGTGCAATTCACCCAAACCGGGCCGCTTTGGACTAATGAGAAGCACATGCACTTCTTGAATTCCGTGGAAGCTTCTTTCGTCCGATCAATGTTCCAAAATCGCGCACATCGCCGCGGTCTACGGCTGGACCGCCTCTTGCCGGACACCGCTGACTCAACCCTAGATTCCCCTCATAACCACACCAAAAACCATCCCACCTCCGGAAGTGCAAGAATCAACGGTAGATCTACGAGGAGATCTAGGAGGATATCATCTCCACCGTACACTTCAACTCAAGATCAGGCTAGTGCAGAAACTATATACTATAAATTTAAACATTACATTTCTTTCTTTCTTTTATCTCTACTAATAATAGAAATGACCTATTTGTTTTTGTCTTTATCTCCTTCTTTTTCCATCGAAATAATTATGCTGCCTTTTTTTTTTTGCGGCTGGTGTGGGTATTTTGGAAATGCCACGTGGATATAGATTATAAAATTAAGAAAAAAGTGATCATATCCGTAATTAAAGCATATAGCTTTGTGCTCCCACATCTAATTGGCTAAACTCTAATTATTAATTTTTTAGTAGTAAAATTGATAATAGAAAAGAGAAGAGAAGAAACTAAAAATATCTGGTTCAATTATTAAACAAAGCTCAGGAATGATGGTTATCTTGTAAAATACACAAAAAGAAGTTATAAAAAATGGTATTAATGAATGAATGAATTATAGAATTGAAATAAAAATGTGGAATGGTTTTGTGTGAAATGACAGGTGGTCCCACAGATGGAAAAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCATGTCACCTCTCAACTAGCAAATATATTCTTCTTCTTCTTCTTCTTTTAATCTTTATATCTTTTCATTTTAGTTTTTAGATCTTTAATTAATTATTGTCTGAACAAACAAACAAACACAAAGATGGGTCTAATTCAGAAATTAAGTGAATTTCAATTGGCTTACTTCATGTTCAATTTACAAGTCATATTTTACGTATGACATCATGAGGTTGAATTAATTACCATTCACCTTCAGTACTGCTTTACACATATTTTATTTTACTTGTGTTAATTACATGATTTATATT

Coding sequence (CDS)

ATGGAATCGCATGTGCAATTCACCCAAACCGGGCCGCTTTGGACTAATGAGAAGCACATGCACTTCTTGAATTCCGTGGAAGCTTCTTTCGTCCGATCAATGTTCCAAAATCGCGCACATCGCCGCGGTCTACGGCTGGACCGCCTCTTGCCGGACACCGCTGACTCAACCCTAGATTCCCCTCATAACCACACCAAAAACCATCCCACCTCCGGAAGTGCAAGAATCAACGGTAGATCTACGAGGAGATCTAGGAGGATATCATCTCCACCGTACACTTCAACTCAAGATCAGGCTAGTGCAGAAACTATATACTATAAATTTAAACATTACATTTCTTTCTTTCTTTTATCTCTACTAATAATAGAAATGACCTATTTGTTTTTGTCTTTATCTCCTTCTTTTTCCATCGAAATAATTATGCTGCCTTTTTTTTTTTGCGGCTGGTGTGGGTATTTTGGAAATGCCACGTGGATATAG

Protein sequence

MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDSPHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQASAETIYYKFKHYISFFLLSLLIIEMTYLFLSLSPSFSIEIIMLPFFFCGWCGYFGNATWI*

Homology

[Close]

BLAST of CsGy3G016890 vs. NCBI nr
Match: XP_004140781.1 (uncharacterized protein LOC101217506 [Cucumis sativus] >KGN57360.1 hypothetical protein Csa_009764 [Cucumis sativus])

HSP 1 Score: 200 bits (509), Expect = 2.28e-63
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDS 60
          MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDS
Sbjct: 1  MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDS 60

Query: 61 PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQ 98
          PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQ
Sbjct: 61 PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQ 98

[Close]

BLAST of CsGy3G016890 vs. NCBI nr
Match: XP_008439192.1 (PREDICTED: uncharacterized protein LOC103484063 [Cucumis melo])

HSP 1 Score: 185 bits (469), Expect = 2.81e-57
Identity = 91/98 (92.86%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1  MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDS 60
          MESHVQFTQTGP WTNEKHMHFLNS+EASFVRSMFQNRAHRR LRLDRLLPDTADSTLDS
Sbjct: 1  MESHVQFTQTGPSWTNEKHMHFLNSMEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS 60

Query: 61 PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQ 98
          P NHTKNHPTSGSAR+NGRSTRRSRR SSPPY+STQDQ
Sbjct: 61 PLNHTKNHPTSGSARMNGRSTRRSRRTSSPPYSSTQDQ 98

[Close]

BLAST of CsGy3G016890 vs. NCBI nr
Match: XP_038882732.1 (uncharacterized protein LOC120073889 isoform X1 [Benincasa hispida])

HSP 1 Score: 150 bits (379), Expect = 1.45e-43
Identity = 79/100 (79.00%), Postives = 88/100 (88.00%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAH-RRGLRLDRLLPDTADSTLD 60
           MESHVQF++TGP WTNEKHMHFLNS+EASFV+SMF+NR H RR LRLDR LPDTADSTLD
Sbjct: 1   MESHVQFSETGPFWTNEKHMHFLNSMEASFVQSMFENRNHHRRRLRLDRHLPDTADSTLD 60

Query: 61  SPH-NHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQ 98
           SP  + TKNH TS + RINGRS+RRSRRISS P+TSTQDQ
Sbjct: 61  SPQKDDTKNHATSEAVRINGRSSRRSRRISSLPHTSTQDQ 100

[Close]

BLAST of CsGy3G016890 vs. NCBI nr
Match: XP_038882735.1 (uncharacterized protein LOC120073889 isoform X2 [Benincasa hispida])

HSP 1 Score: 146 bits (369), Expect = 4.66e-42
Identity = 79/100 (79.00%), Postives = 87/100 (87.00%), Query Frame = 0


Query: 1  MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAH-RRGLRLDRLLPDTADSTLD 60
          MESHVQF++TGP WTNEKHMHFLNS+EASFV+SMF+NR H RR LRLDR LPDTADSTLD
Sbjct: 1  MESHVQFSETGPFWTNEKHMHFLNSMEASFVQSMFENRNHHRRRLRLDRHLPDTADSTLD 60

Query: 61 SPH-NHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQ 98
          SP  + TKNH TS   RINGRS+RRSRRISS P+TSTQDQ
Sbjct: 61 SPQKDDTKNHATSA-VRINGRSSRRSRRISSLPHTSTQDQ 99

[Close]

BLAST of CsGy3G016890 vs. NCBI nr
Match: XP_023552558.1 (uncharacterized protein LOC111810184 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142 bits (358), Expect = 2.11e-40
Identity = 72/98 (73.47%), Postives = 81/98 (82.65%), Query Frame = 0


Query: 1  MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDS 60
          MESHVQF++T P WTNEKHMHFLNS+EASFVRSMF+NR HRR LRLDR L DTADSTLDS
Sbjct: 1  MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRLLRLDRHLSDTADSTLDS 60

Query: 61 PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQ 98
          PH + K H  S   R++GRS+RRSRRI S P+TS QDQ
Sbjct: 61 PHKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQ 98

[Close]

BLAST of CsGy3G016890 vs. ExPASy TrEMBL
Match: A0A0A0L5V0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181960 PE=4 SV=1)

HSP 1 Score: 200 bits (509), Expect = 1.11e-63
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDS 60
          MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDS
Sbjct: 1  MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDS 60

Query: 61 PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQ 98
          PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQ
Sbjct: 61 PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQ 98

[Close]

BLAST of CsGy3G016890 vs. ExPASy TrEMBL
Match: A0A1S3AYV4 (uncharacterized protein LOC103484063 OS=Cucumis melo OX=3656 GN=LOC103484063 PE=4 SV=1)

HSP 1 Score: 185 bits (469), Expect = 1.36e-57
Identity = 91/98 (92.86%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1  MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDS 60
          MESHVQFTQTGP WTNEKHMHFLNS+EASFVRSMFQNRAHRR LRLDRLLPDTADSTLDS
Sbjct: 1  MESHVQFTQTGPSWTNEKHMHFLNSMEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS 60

Query: 61 PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQ 98
          P NHTKNHPTSGSAR+NGRSTRRSRR SSPPY+STQDQ
Sbjct: 61 PLNHTKNHPTSGSARMNGRSTRRSRRTSSPPYSSTQDQ 98

[Close]

BLAST of CsGy3G016890 vs. ExPASy TrEMBL
Match: A0A6J1JBA6 (uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 140 bits (352), Expect = 8.33e-40
Identity = 71/98 (72.45%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 1  MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDS 60
          MESHVQF++T P WTNEKHMHFLNS+EASFVRSMF+NR HRR LRLDR L DTADSTLDS
Sbjct: 1  MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61 PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQ 98
          P  + K H  S   R++GRS+RRSRRI S P+TS QDQ
Sbjct: 61 PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQ 98

[Close]

BLAST of CsGy3G016890 vs. ExPASy TrEMBL
Match: A0A6J1CHV7 (uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011640 PE=4 SV=1)

HSP 1 Score: 140 bits (354), Expect = 9.43e-40
Identity = 73/99 (73.74%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRG-LRLDRLLPDTADSTLD 60
           MESHVQF +TG  WTNEKHMHFLNS+EASFVRSMF+NR HRR  LRLDR LPDT+DSTLD
Sbjct: 27  MESHVQFNETGSCWTNEKHMHFLNSMEASFVRSMFENRTHRRRRLRLDRHLPDTSDSTLD 86

Query: 61  SPHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQ 98
           SP    KNH TSG+A I+GRS+ RSR  SS P+TS QDQ
Sbjct: 87  SPQKDRKNHATSGAATIDGRSSSRSRTRSSLPHTSNQDQ 125

[Close]

BLAST of CsGy3G016890 vs. ExPASy TrEMBL
Match: A0A6J1J606 (uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 139 bits (350), Expect = 1.63e-39
Identity = 72/98 (73.47%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 1  MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDS 60
          MESHVQF++T P WTNEKHMHFLNS+EASFVRSMF+NR HRR LRLDR L DTADSTLDS
Sbjct: 1  MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61 PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQ 98
          P  + K H  SG+ R++GRS+RRSRRI S P+TS QDQ
Sbjct: 61 PQKNRKKHSISGT-RMDGRSSRRSRRIPSLPHTSIQDQ 97

The following BLAST results are available for this feature:

BLAST of CsGy3G016890 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G016890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140781.1	2.28e-63	100.00	uncharacterized protein LOC101217506 [Cucumis sativus] >KGN57360.1 hypothetical ...	[more]
XP_008439192.1	2.81e-57	92.86	PREDICTED: uncharacterized protein LOC103484063 [Cucumis melo]	[more]
XP_038882732.1	1.45e-43	79.00	uncharacterized protein LOC120073889 isoform X1 [Benincasa hispida]	[more]
XP_038882735.1	4.66e-42	79.00	uncharacterized protein LOC120073889 isoform X2 [Benincasa hispida]	[more]
XP_023552558.1	2.11e-40	73.47	uncharacterized protein LOC111810184 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy3G016890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5V0	1.11e-63	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181960 PE=4 SV=1	[more]
A0A1S3AYV4	1.36e-57	92.86	uncharacterized protein LOC103484063 OS=Cucumis melo OX=3656 GN=LOC103484063 PE=...	[more]
A0A6J1JBA6	8.33e-40	72.45	uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1CHV7	9.43e-40	73.74	uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1J606	1.63e-39	73.47	uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CsGy3G016890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..95
None	No IPR available	PANTHER	PTHR33676:SF15	SUBFAMILY NOT NAMED	coord: 1..100
IPR044678	Cold-regulated protein 27/28	PANTHER	PTHR33676	COLD REGULATED PROTEIN 27	coord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G016890.2	CsGy3G016890.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042752	regulation of circadian rhythm
biological_process	GO:0009409	response to cold