CsGy3G015560 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy3G015560
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description50S ribosomal protein L18
LocationGy14Chr3: 11508256 .. 11511677 (+)
RNA-Seq ExpressionCsGy3G015560
SyntenyCsGy3G015560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCAACCCCAACTCAACTACAAAACACAATCAAATCCTCGACGAGAGAAGCAGGGCAACAATGGCTTCAACCACTGCTCCTTGTTCCTTCCTCCGCACTTCCTTTCTAACCGTATCTTATTCACAGAACATTCTCAACCGTCCGCACCTTCATTTTCCGCCTACTACTTCAAGTTCCGGCCGTCACTCTCTTGTTGTTGAAGCCAAGGCTACGACCAGACGAGAGGACCGCACAGCTCGCCATTCTCGAATTAGGAAGAAGGTAATTCCACCCTCTAATTTGGGTCAATTTTAAATGTTGTGCTAATTCCTCCTTTCTCTTGTTCAACATTGTTCTTCTCTACCTTGAATACTTTTAGAGGTTGGCTGGAAATGGAGGGGGTCTTTTGATTATTCTTGCAATGGATGTATCGGGGTTTCATTTTATCACCCTATGTTATGTGCTAAACAATTGTTAGTGTACTTCCCTTTGGATATTGTTTCGTTTTTGTTTTTTTTTTTTTTTTGATAGCTTATCAATTCATTGATTTTTTTTTTTCTTCTCTTTTTAGTTTAGAAGTTCTGGTTAGACTACCTAATAGGTTACTTCTTTCTTAGAACATTGCCACTACTTCGTTACACAAGTTATGGGTTTCTGAAGATTGAGGGAAAAAGGGAACAGAATAAAGAAATTGTTATTTGTCATTGCTGCGAGTCAAAACTTCAAAATAGAATTAATATATTTTCAAACGATAGTCTTCATAGCTGTAATCAAAACTTGTTTCGTGATAGGATCTGCTAAGATTTACATTTCTCTCCTTTGGAACTCAGATGACTTGAAAGTAGATTTATTTGTTGGAGAAACCAAAATCCTTAGGAAGAAGTAACTTGTACAAGGAATAGACAGGCAACAGGAGGTTGGACCCCAGAACACAAAATACGAAAGATATCCCCATTTTATATGTATGTTAGCTAAGAAATAAGCCTCATATGTGGAACCACAACTAATTACAACGGAAATGGTGAGATGGTGATCGCCCAGAGCTGGAGGCCCAATATGTTACTAGAACACCAACCCTTCAATTATCAATGTTGAGCAAAAAAAACAGGGTTACTATATGTTCCAGCGTGAGTGTTGAATCTAATGCTACCATTGTACAAAGGAATATGTCCTTTTTCGGATCTTTTAGCACTGTAATTCTCCAGTAATGGGACAGGGTAGCATTATGCATAGGACTTCAGAGACATGAAAAGAGCAACAAGGTAATGCTCAGTGGAGAAAACATTGTTGAAAGCATTTCCTTGAACCCTACCAAGTTACCCAATTATATGCTCGAACTATATTCTGTGTTCCACTGTTATTCATGTGGAAGGTACGTGCAGCATGCACAGAACAGGAGGATCATGGCACATGCACCTGCATACAATATGAATCAAGTTCATGCATCCAGTGGATGACTAGTTTCAAATCTAAATTTTCCTTATCCATGGAACTAAGCACAGAAACTTGCCCAATATTACTAAGGAGATCCAAATGGAAGATAAACTTCAGTCAGTCAGCCATCTTCAAGGAAATTTGCACTAGGACTTCCTACGGTTGTGGTGATTGTGTGAGCTTTAGTAGGTTTAAGTTCAAATGGAAGGTTTTGTTCTAAAGATTCAAGCTACTGGATAGAGTTAATTGACACTATTTCTATGAAGCAAGGATTTAGTTGAACATTTAGAGAGCTCTGTTGACCTTGATGAGAGGGAAGAGAATAAGAGAGCCAGAGATTGGTGAATCAGTCATTATCATTGAGGGAGCATGTGAGACTGACACTTTTTTTTCATTACTATTGATGCGGACAATGTTGGGAAGCATTTTTCTGAATCTTGTGGGTTGGATTTTGATTTCAGCTTTCTTGCATGTTCACTGTATCCCTAGTTATAGAATCTTGGTATTGATGGTTTTGGAAGGCTGACTAAGCGAGGGAGGTTGCTTAGGTTGTACTTTACTAGGGCAAATCGGAACAAAACACTACATGCTTGACCTGCATATGACACTTGGGACGATAGCATTTCCATTCTGCCATAAGATCTGTGTTCAACTGAATTTTTTTAAAATACATTTAGAATGGTGAAATAAAGTTAATAGGATTTTTAATGGGAAGTATATCCTCCCGCTCTAACTCAAAGATTTATGGATAATTCTCTTTAATTAAACATCTGAACGTAGTACATGATCAGTTGAATCTTTTTAATCTTCCTTTTTTCATACATCTGGATCCCTTCAGAACTGTTCTGGTTTACAATTGTTGTCTTTATAATAGCAAATTGATCCTTGCGGGTATAGATGGTAGATACTAAAGTACAGTTCACCTGTACAATCATCTTTTGTCTTAGGTTGAAGGAACAACGGAGAGGCCAAGGTTATCTGTTTTCCGTTCGAATAAGCATTTGTATGTACAGGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCTACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATTGTGAGTCACTTAACTAAGAATTAGTTGATTGATCTACTGATGTAGATATATATGTGTATGCGTGTGCAGATATATATATATATATATATTGGTCCTATGGTAATCTTTAGCTTTCATCCACCCTTTTCCAAACTTTGTTCCACTGGTTTGATGTCTATGTAGATCTTCATACCTCTACTAAATAAGAGAGCATCCATTAATTTGGTCAGACATCCTGAGAGATTTGATTACTGAACTTGAATACATAAATGAAACAGCAAAAGAAAAGAAAAACAAAACTATAAATGCCAAGACCAATAGCTAGTCTTTAAAGGAGCATTAAGTTTAGTTATTGTACAAAGCCTTACTTGAATAGATGAGTTCTATCTGTATGTCAACAAATTAAACTTTTTAGTCTCTAAAGGCTAAATTTGAAAAAGTTTGTCTTACTTGTCAGTCATTCTATTAACACTGCTAATCAACCTAAGACGTGACAAAGACTGGATAGAATTACAAGCCCAAGTTAAAGGATGAGATTAAATTTAGAGACCAAGTAGATGTCTTGATCGAAGCAGAATTCTTATTATTATGTGGATAATATGATTGTTACAGGAAGTGGCAAAGAAAATAGGGGAAGCGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCATTCGATCGCGGTGGATATCCATACCATGGACGAGTAGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAATTCTGAGAATCCTTGTGTGTGTGTTTTTTTTCTTCATATCTTTTAGCTTGGTATTATGTAACAGTGCCATCATATGGGCTTATTTTCTGTTGATTAGACGAGAGTTGTAGTCGTTTGACCTGAAATTAAGAGGGAAATTATTTATTGATTCATCTTTTCTTGGCA

mRNA sequence

GGCAACCCCAACTCAACTACAAAACACAATCAAATCCTCGACGAGAGAAGCAGGGCAACAATGGCTTCAACCACTGCTCCTTGTTCCTTCCTCCGCACTTCCTTTCTAACCGTATCTTATTCACAGAACATTCTCAACCGTCCGCACCTTCATTTTCCGCCTACTACTTCAAGTTCCGGCCGTCACTCTCTTGTTGTTGAAGCCAAGGCTACGACCAGACGAGAGGACCGCACAGCTCGCCATTCTCGAATTAGGAAGAAGGTTGAAGGAACAACGGAGAGGCCAAGGTTATCTGTTTTCCGTTCGAATAAGCATTTGTATGTACAGGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCTACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATTGAAGTGGCAAAGAAAATAGGGGAAGCGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCATTCGATCGCGGTGGATATCCATACCATGGACGAGTAGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAATTCTGAGAATCCTTGTGTGTGTGTTTTTTTTCTTCATATCTTTTAGCTTGGTATTATGTAACAGTGCCATCATATGGGCTTATTTTCTGTTGATTAGACGAGAGTTGTAGTCGTTTGACCTGAAATTAAGAGGGAAATTATTTATTGATTCATCTTTTCTTGGCA

Coding sequence (CDS)

ATGGCTTCAACCACTGCTCCTTGTTCCTTCCTCCGCACTTCCTTTCTAACCGTATCTTATTCACAGAACATTCTCAACCGTCCGCACCTTCATTTTCCGCCTACTACTTCAAGTTCCGGCCGTCACTCTCTTGTTGTTGAAGCCAAGGCTACGACCAGACGAGAGGACCGCACAGCTCGCCATTCTCGAATTAGGAAGAAGGTTGAAGGAACAACGGAGAGGCCAAGGTTATCTGTTTTCCGTTCGAATAAGCATTTGTATGTACAGGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCTACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATTGAAGTGGCAAAGAAAATAGGGGAAGCGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCATTCGATCGCGGTGGATATCCATACCATGGACGAGTAGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAATTCTGA

Protein sequence

MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF*
Homology
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BLAST of CsGy3G015560 vs. ExPASy Swiss-Prot
Match: P82195 (50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 PE=1 SV=3)

HSP 1 Score: 218.0 bits (554), Expect = 8.2e-56
Identity = 121/172 (70.35%), Postives = 136/172 (79.07%), Query Frame = 0 

Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRP--HLHFPPTTSSSGRHSLVVEAKATTRREDRT 60
           MA+ T+   F  T   + S S   L+ P   ++F P T        +++AKA TRREDRT
Sbjct: 1   MAAATSLSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLP------LIQAKAHTRREDRT 60

Query: 61  ARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAG 120
           ARH RIRKKVEGT ERPRL VFRSNKHLYVQVIDD+KMHTLAA STMQK+ISE +DYSAG
Sbjct: 61  ARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAG 120

Query: 121 PTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           PT+EVA+KIGE IAKSCLEKGITKVAFDRGGYPYHGRV+ALADAAREHGL F
Sbjct: 121 PTVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 166

[Close]
BLAST of CsGy3G015560 vs. ExPASy Swiss-Prot
Match: Q9SX68 (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 7.0e-55
Identity = 110/138 (79.71%), Postives = 119/138 (86.23%), Query Frame = 0 

Query: 33  PPTTSSSGRHSLVVEAKATTRREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVID 92
           P ++SS    S+VVEAK  T  EDR ARHSRIRKKV GTTERPRL VFRSNKHLYVQVID
Sbjct: 33  PWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVID 92

Query: 93  DSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPY 152
           D+KMHTLA+ ST QK ISE  DY++GPTIEVAKK+GE IAKSCLEKGITKVAFDRGGYPY
Sbjct: 93  DTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPY 152

Query: 153 HGRVEALADAAREHGLQF 171
           HGR+EALA AAREHGLQF
Sbjct: 153 HGRIEALAAAAREHGLQF 170

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BLAST of CsGy3G015560 vs. ExPASy Swiss-Prot
Match: Q8SAY0 (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.0e-47
Identity = 99/145 (68.28%), Postives = 116/145 (80.00%), Query Frame = 0 

Query: 28  PHLHFPPTTSSSGRHSLVVEA--KATTRREDRTARHSRIRKKVEGTTERPRLSVFRSNKH 87
           P +  P  + +  R SLVV A  K +T + DR ARH R+RKKV GTTERPRLSVFRSNKH
Sbjct: 26  PAISAPSPSQARRRASLVVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKH 85

Query: 88  LYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAF 147
           LY QVIDD+K  TL + STM KS+S+ L+YSAGPT+EVA+KIGE IAKSCLEKGITKV F
Sbjct: 86  LYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKVVF 145

Query: 148 DRGGYPYHGRVEALADAAREHGLQF 171
           DRGG+ YHGR++ALADAARE+GL F
Sbjct: 146 DRGGFLYHGRIKALADAARENGLDF 170

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BLAST of CsGy3G015560 vs. ExPASy Swiss-Prot
Match: Q5L3S3 (50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rplR PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 7.5e-33
Identity = 75/118 (63.56%), Postives = 88/118 (74.58%), Query Frame = 0 

Query: 53  RREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GT ERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDKEF--G 66

Query: 113 LDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           LD  +   IE AKK+GE +AK  LEKGI KV FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LD--STNNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120

[Close]
BLAST of CsGy3G015560 vs. ExPASy Swiss-Prot
Match: P09415 (50S ribosomal protein L18 OS=Geobacillus stearothermophilus OX=1422 GN=rplR PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 7.5e-33
Identity = 75/118 (63.56%), Postives = 89/118 (75.42%), Query Frame = 0 

Query: 53  RREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GTTERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEF--G 66

Query: 113 LDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           LD  +   IE AKK+GE +AK  LEKGI +V FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LD--STNNIEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120

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BLAST of CsGy3G015560 vs. NCBI nr
Match: XP_004147640.1 (50S ribosomal protein L18, chloroplastic [Cucumis sativus] >KGN57222.1 hypothetical protein Csa_010063 [Cucumis sativus])

HSP 1 Score: 333 bits (853), Expect = 6.64e-115
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 

Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60
           MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of CsGy3G015560 vs. NCBI nr
Match: XP_008439021.1 (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo] >KAA0052138.1 50S ribosomal protein L18 [Cucumis melo var. makuwa] >TYK05105.1 50S ribosomal protein L18 [Cucumis melo var. makuwa])

HSP 1 Score: 323 bits (828), Expect = 4.31e-111
Identity = 165/170 (97.06%), Postives = 167/170 (98.24%), Query Frame = 0 

Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60
           MASTTAPCSFL TSFL+VSYSQNILNRPHLHFP TTSSSGRHSLVVEAKATTRREDR AR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of CsGy3G015560 vs. NCBI nr
Match: XP_038885362.1 (50S ribosomal protein L18, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 313 bits (802), Expect = 3.97e-107
Identity = 160/170 (94.12%), Postives = 165/170 (97.06%), Query Frame = 0 

Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60
           MAS TAP SFL TSFL+VSYSQN+ NRPHLHFP TTSSSGRHSLVVEA+ATTRREDR+AR
Sbjct: 1   MASATAPLSFLGTSFLSVSYSQNLRNRPHLHFPATTSSSGRHSLVVEAQATTRREDRSAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of CsGy3G015560 vs. NCBI nr
Match: XP_023538937.1 (50S ribosomal protein L18, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293 bits (750), Expect = 3.36e-99
Identity = 151/170 (88.82%), Postives = 158/170 (92.94%), Query Frame = 0 

Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60
           M+S  AP SFL TS L VSYSQN+   PHL+FP TTSSSGRHSLV+EAKATTRREDR AR
Sbjct: 1   MSSAIAPLSFLGTSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120

Query: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170

[Close]
BLAST of CsGy3G015560 vs. NCBI nr
Match: KAG6597602.1 (50S ribosomal protein L18, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 291 bits (744), Expect = 2.76e-98
Identity = 150/170 (88.24%), Postives = 157/170 (92.35%), Query Frame = 0 

Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60
           M S  AP SFL +S L VSYSQN+   PHL+FP TTSSSGRHSLV+EAKATTRREDR AR
Sbjct: 1   MPSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120

Query: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170

[Close]
BLAST of CsGy3G015560 vs. ExPASy TrEMBL
Match: A0A0A0L9A4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171790 PE=3 SV=1)

HSP 1 Score: 333 bits (853), Expect = 3.22e-115
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 

Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60
           MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of CsGy3G015560 vs. ExPASy TrEMBL
Match: A0A5A7UA63 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00090 PE=3 SV=1)

HSP 1 Score: 323 bits (828), Expect = 2.09e-111
Identity = 165/170 (97.06%), Postives = 167/170 (98.24%), Query Frame = 0 

Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60
           MASTTAPCSFL TSFL+VSYSQNILNRPHLHFP TTSSSGRHSLVVEAKATTRREDR AR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of CsGy3G015560 vs. ExPASy TrEMBL
Match: A0A1S3AXQ6 (50S ribosomal protein L18, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483939 PE=3 SV=1)

HSP 1 Score: 323 bits (828), Expect = 2.09e-111
Identity = 165/170 (97.06%), Postives = 167/170 (98.24%), Query Frame = 0 

Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60
           MASTTAPCSFL TSFL+VSYSQNILNRPHLHFP TTSSSGRHSLVVEAKATTRREDR AR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of CsGy3G015560 vs. ExPASy TrEMBL
Match: A0A6J1IAC8 (50S ribosomal protein L18, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470699 PE=3 SV=1)

HSP 1 Score: 288 bits (737), Expect = 1.56e-97
Identity = 149/170 (87.65%), Postives = 158/170 (92.94%), Query Frame = 0 

Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60
           M+S TA  SFL +S L VSYSQN+   PHL+FP +TSSSGRHSLV+EAKATTRREDR AR
Sbjct: 1   MSSATAFISFLGSSILGVSYSQNLRVPPHLNFPSSTSSSGRHSLVIEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120

Query: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170

[Close]
BLAST of CsGy3G015560 vs. ExPASy TrEMBL
Match: A0A6J1C7Y4 (50S ribosomal protein L18, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009192 PE=3 SV=1)

HSP 1 Score: 288 bits (736), Expect = 2.21e-97
Identity = 145/170 (85.29%), Postives = 156/170 (91.76%), Query Frame = 0 

Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60
           M++  +PCSFL +SFL+VSY Q + NRP  +FP  TSSSGRHSL+VEAKATTRREDR AR
Sbjct: 1   MSAAISPCSFLGSSFLSVSYPQKLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGT ERPRLSV+RSNKHLYVQVIDDSKMHTLAA STMQKSISEGLDYS+GPT
Sbjct: 61  HSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPT 120

Query: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           IEVAKK+GE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of CsGy3G015560 vs. TAIR 10
Match: AT1G48350.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 214.9 bits (546), Expect = 4.9e-56
Identity = 110/138 (79.71%), Postives = 119/138 (86.23%), Query Frame = 0 

Query: 33  PPTTSSSGRHSLVVEAKATTRREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVID 92
           P ++SS    S+VVEAK  T  EDR ARHSRIRKKV GTTERPRL VFRSNKHLYVQVID
Sbjct: 33  PWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVID 92

Query: 93  DSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPY 152
           D+KMHTLA+ ST QK ISE  DY++GPTIEVAKK+GE IAKSCLEKGITKVAFDRGGYPY
Sbjct: 93  DTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPY 152

Query: 153 HGRVEALADAAREHGLQF 171
           HGR+EALA AAREHGLQF
Sbjct: 153 HGRIEALAAAAREHGLQF 170

[Close]
BLAST of CsGy3G015560 vs. TAIR 10
Match: AT1G14205.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 77.8 bits (190), Expect = 9.4e-15
Identity = 59/161 (36.65%), Postives = 86/161 (53.42%), Query Frame = 0 

Query: 13  TSFLTVSYS-QNILN---RPHLHFP-PTTSSSGRHSLVVEAKATTRREDRTARHSRIRKK 72
           TS  TV +   +IL    +P+  FP   T+ S     V+EA+  TR E    R+ R RKK
Sbjct: 5   TSLSTVQFRVSDILGTRLKPYPQFPIRITTMSVVKPFVIEARGNTRVESPKTRNRRSRKK 64

Query: 73  VEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKI 132
             GT  +PRLSVF S+K LY  ++DD     L   ST+QKSI      +    IE AK++
Sbjct: 65  FTGTQTKPRLSVFCSDKQLYAMLVDDFNKKCLFYASTLQKSIRGDPPCT---VIEAAKRV 124

Query: 133 GEAIAKSCLEKGITKV-AFDRGGYPYHGRVEALADAAREHG 168
           GE + K+ ++  I ++ ++DR G     R++A   A  +HG
Sbjct: 125 GEELIKASIDLKINEISSYDRNGNKRGERMQAFEIAIAQHG 162

[Close]
BLAST of CsGy3G015560 vs. TAIR 10
Match: AT3G17626.1 (structural constituent of ribosome )

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-09
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 118 GPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHG 155
           G TIE+AKK+GE I KSC+E GITKVAFDR  Y YHG
Sbjct: 11  GSTIEMAKKVGEVIEKSCVENGITKVAFDRAIYTYHG 47

[Close]
BLAST of CsGy3G015560 vs. TAIR 10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 45.1 bits (105), Expect = 6.8e-05
Identity = 27/94 (28.72%), Postives = 49/94 (52.13%), Query Frame = 0 

Query: 77  LSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIGEAIAKSCL 136
           L +  +NK ++ QVI         + S+ +K++ E +D +    +  A KIG+ + +  L
Sbjct: 21  LKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITR--DVAAASKIGKILGERLL 80

Query: 137 EKGITKVAFD-RGGYPYHGRVEALADAAREHGLQ 170
            K I  V    +    YHG+V+A+ D+ RE G++
Sbjct: 81  MKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVK 112

The following BLAST results are available for this feature:
BLAST of CsGy3G015560 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P821958.2e-5670.3550S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 P... [more]
Q9SX687.0e-5579.7150S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1... [more]
Q8SAY07.0e-4768.2850S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=3994... [more]
Q5L3S37.5e-3363.5650S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 ... [more]
P094157.5e-3363.5650S ribosomal protein L18 OS=Geobacillus stearothermophilus OX=1422 GN=rplR PE=1... [more]
BLAST of CsGy3G015560 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004147640.16.64e-115100.0050S ribosomal protein L18, chloroplastic [Cucumis sativus] >KGN57222.1 hypotheti... [more]
XP_008439021.14.31e-11197.06PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo] >KAA0052138.1... [more]
XP_038885362.13.97e-10794.1250S ribosomal protein L18, chloroplastic-like [Benincasa hispida][more]
XP_023538937.13.36e-9988.8250S ribosomal protein L18, chloroplastic [Cucurbita pepo subsp. pepo][more]
KAG6597602.12.76e-9888.2450S ribosomal protein L18, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
BLAST of CsGy3G015560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9A43.22e-115100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171790 PE=3 SV=1[more]
A0A5A7UA632.09e-11197.0650S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3AXQ62.09e-11197.0650S ribosomal protein L18, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483939... [more]
A0A6J1IAC81.56e-9787.6550S ribosomal protein L18, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147... [more]
A0A6J1C7Y42.21e-9785.2950S ribosomal protein L18, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
BLAST of CsGy3G015560 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G48350.14.9e-5679.71Ribosomal L18p/L5e family protein [more]
AT1G14205.19.4e-1536.65Ribosomal L18p/L5e family protein [more]
AT3G17626.12.7e-0972.97structural constituent of ribosome [more]
AT5G27820.16.8e-0528.72Ribosomal L18p/L5e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.420.100coord: 51..170
e-value: 1.2E-46
score: 160.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..70
NoneNo IPR availablePANTHERPTHR12899:SF339S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 17..170
NoneNo IPR availableCDDcd00432Ribosomal_L18_L5ecoord: 64..168
e-value: 1.98359E-45
score: 142.679
NoneNo IPR availableSUPERFAMILY53137Translational machinery componentscoord: 53..168
IPR004389Ribosomal protein L18, bacterial-typeTIGRFAMTIGR00060TIGR00060coord: 54..170
e-value: 3.9E-42
score: 141.2
IPR004389Ribosomal protein L18, bacterial-typeHAMAPMF_01337_BRibosomal_L18_Bcoord: 52..170
score: 27.955446
IPR005484Ribosomal protein L18PFAMPF00861Ribosomal_L18pcoord: 52..170
e-value: 4.4E-46
score: 156.0
IPR005484Ribosomal protein L18PANTHERPTHR1289939S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 17..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G015560.1CsGy3G015560.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
molecular_function GO:0008097 5S rRNA binding
molecular_function GO:0003735 structural constituent of ribosome