CsGy3G014910 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G014910
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	leucine-rich repeat extensin-like protein 6
Location	Gy14Chr3: 10966167 .. 10967082 (+)
RNA-Seq Expression	CsGy3G014910
Synteny	CsGy3G014910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCACTTCACTAATCTCCTTTGTAATTCCATTTCCCACCCTCTCTCTTCCCCCCACAATGGAAACTCCCATTCCTCTCCAATTTCTCATCTCTCTCACCGCGCTTCTCCTCCTTTTTCCCTCCGGAATTTCATCTCTTCCGGTCTTCCACCCCCGCTCCTCCGCCGGTGCTAAGTACCAAATTGAATGCACAATGTGCTCTGCTTGTGACAATCCTTGCGCTCAGTATCTATCTCCCCCACCTCCTCCACCGTCTCCTCCTCCCCCGTCAACTGTCCGCCCCCGCCTTCTCCTCCCAGCTCCGGCACCTACGACTACTACTCTCCCCCCCACCAGCTCAACCCTCTTACACATACTCCTCCCCGCCGCCGCCGGGTGGAATCATCGGACCCGGGGGGTACTACCAGCCCCCGCCGTATAGTAATTACCCAGCTCCCCCGCCTCCCAATCCCATTGTCCCATACTTCCCATTTTTTTACCATACTCCACCGCCGGGCTCTTCCGCCGCCGTCCCCCGTTTGACGAATTCCTTGCCTTGCTCTGTTCTTACCGTTGCCCTGTTTTCCTTTTTACTTGCTTTGTTTTAAATGCAAATAACAGCAGACAGAAACTTGCAATAATGGCGGATTTTGCAGATCTGGGAAATTGATGGAGCTAAATGAGAAAGAGAAATTGAGAAAAAAGAAAAAGGGTTTCGATCTTCGAAGAAGACGATGAGAAATTCACTTCAAGAATTTGCATTCTGTTGGGGTAAAGAAATTTTCTTTCTCATCCGGAAATTTCCTCTGAATCTCTTTCTTTTTACTTGACTCCATTGTTATTAGATTGATTTGTAATCTGCTGATTATATATAAATTGTATGTGTTTTTACTTGTATTCTTAACTCAATTCCTCAAAAAGCAAATCTGTATGTATC

mRNA sequence

CTTCACTTCACTAATCTCCTTTGTAATTCCATTTCCCACCCTCTCTCTTCCCCCCACAATGGAAACTCCCATTCCTCTCCAATTTCTCATCTCTCTCACCGCGCTTCTCCTCCTTTTTCCCTCCGGAATTTCATCTCTTCCGGTCTTCCACCCCCGCTCCTCCGCCGGTGCTAAGTACCAAATTGAATGCACAATGTGCTCTGCTTGTGACAATCCTTGCGCTCAGTATCTATCTCCCCCACCTCCTCCACCGTCTCCTCCTCCCCCGTCAACTGTCCGCCCCCGCCTTCTCCTCCCAGCTCCGGCACCTACGACTACTACTCTCCCCCCCACCAGCTCAACCCTCTTACACATACTCCTCCCCGCCGCCGCCGGGTGGAATCATCGGACCCGGGGGGTACTACCAGCCCCCGCCGTATAGTAATTACCCAGCTCCCCCGCCTCCCAATCCCATTGTCCCATACTTCCCATTTTTTTACCATACTCCACCGCCGGGCTCTTCCGCCGCCGTCCCCCGTTTGACGAATTCCTTGCCTTGCTCTGTTCTTACCGTTGCCCTGTTTTCCTTTTTACTTGCTTTGTTTTAAATGCAAATAACAGCAGACAGAAACTTGCAATAATGGCGGATTTTGCAGATCTGGGAAATTGATGGAGCTAAATGAGAAAGAGAAATTGAGAAAAAAGAAAAAGGGTTTCGATCTTCGAAGAAGACGATGAGAAATTCACTTCAAGAATTTGCATTCTGTTGGGGTAAAGAAATTTTCTTTCTCATCCGGAAATTTCCTCTGAATCTCTTTCTTTTTACTTGACTCCATTGTTATTAGATTGATTTGTAATCTGCTGATTATATATAAATTGTATGTGTTTTTACTTGTATTCTTAACTCAATTCCTCAAAAAGCAAATCTGTATGTATC

Coding sequence (CDS)

ATGGAAACTCCCATTCCTCTCCAATTTCTCATCTCTCTCACCGCGCTTCTCCTCCTTTTTCCCTCCGGAATTTCATCTCTTCCGGTCTTCCACCCCCGCTCCTCCGCCGGTGCTAAGTACCAAATTGAATGCACAATGTGCTCTGCTTGTGACAATCCTTGCGCTCAGTATCTATCTCCCCCACCTCCTCCACCGTCTCCTCCTCCCCCGTCAACTGTCCGCCCCCGCCTTCTCCTCCCAGCTCCGGCACCTACGACTACTACTCTCCCCCCCACCAGCTCAACCCTCTTACACATACTCCTCCCCGCCGCCGCCGGGTGGAATCATCGGACCCGGGGGGTACTACCAGCCCCCGCCGTATAG

Protein sequence

METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSPPPPPPSPPPPSTVRPRLLLPAPAPTTTTLPPTSSTLLHILLPAAAGWNHRTRGVLPAPAV*

Homology

[Close]

BLAST of CsGy3G014910 vs. NCBI nr
Match: KGN57146.1 (hypothetical protein Csa_010613 [Cucumis sativus])

HSP 1 Score: 138 bits (348), Expect = 8.20e-39
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSP 60
          METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSP
Sbjct: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSP 60

Query: 61 PPPPPSPPPP 70
          PPPPPSPPPP
Sbjct: 61 PPPPPSPPPP 70

[Close]

BLAST of CsGy3G014910 vs. NCBI nr
Match: KAA0049526.1 (Nutrient reservoir [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (286), Expect = 2.03e-29
Identity = 60/70 (85.71%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSP 60
          ME PI LQ LISLT LLLL     SSLPVFHPRSSAGAKYQIECTMCSACDNPC QYLSP
Sbjct: 1  MEAPISLQILISLTPLLLLLLPRTSSLPVFHPRSSAGAKYQIECTMCSACDNPCGQYLSP 60

Query: 61 PPPPPSPPPP 70
          PPPPPSPPPP
Sbjct: 61 PPPPPSPPPP 70

[Close]

BLAST of CsGy3G014910 vs. NCBI nr
Match: XP_038906774.1 (leucine-rich repeat extensin-like protein 6 [Benincasa hispida])

HSP 1 Score: 105 bits (263), Expect = 5.11e-26
Identity = 58/74 (78.38%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSP 60
          MET I L+F ISLTA+LLLFP+G SSLPV   R SAGAKYQIECTMCSACDNPC QYLSP
Sbjct: 1  METAISLRFFISLTAVLLLFPAGFSSLPVADRRISAGAKYQIECTMCSACDNPCGQYLSP 60

Query: 61 PPPPPS---PPPPS 71
          PPPPP    PPPPS
Sbjct: 61 PPPPPPVNCPPPPS 74

[Close]

BLAST of CsGy3G014910 vs. NCBI nr
Match: XP_022955565.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita moschata])

HSP 1 Score: 105 bits (261), Expect = 1.14e-25
Identity = 54/69 (78.26%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSP 60
          MET I L+F ISLTA+LL FP+G SSLP    R+ AGAKYQIECTMCSACDNPC QYLSP
Sbjct: 1  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP 60

Query: 61 PPPPPSPPP 69
          PPPPPSPPP
Sbjct: 61 PPPPPSPPP 69

[Close]

BLAST of CsGy3G014910 vs. NCBI nr
Match: XP_023526139.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102 bits (255), Expect = 9.10e-25
Identity = 53/69 (76.81%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSP 60
          MET I L+  ISLTA+LL FP+G SSLP    R+ AGAKYQIECTMCSACDNPC QYLSP
Sbjct: 1  METAISLKLFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP 60

Query: 61 PPPPPSPPP 69
          PPPPPSPPP
Sbjct: 61 PPPPPSPPP 69

[Close]

BLAST of CsGy3G014910 vs. ExPASy TrEMBL
Match: A0A0A0LAN7 (Nutrient reservoir OS=Cucumis sativus OX=3659 GN=Csa_3G165630 PE=4 SV=1)

HSP 1 Score: 138 bits (348), Expect = 3.97e-39
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSP 60
          METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSP
Sbjct: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSP 60

Query: 61 PPPPPSPPPP 70
          PPPPPSPPPP
Sbjct: 61 PPPPPSPPPP 70

[Close]

BLAST of CsGy3G014910 vs. ExPASy TrEMBL
Match: A0A5A7U5R9 (Nutrient reservoir OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G007810 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 9.83e-30
Identity = 60/70 (85.71%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSP 60
          ME PI LQ LISLT LLLL     SSLPVFHPRSSAGAKYQIECTMCSACDNPC QYLSP
Sbjct: 1  MEAPISLQILISLTPLLLLLLPRTSSLPVFHPRSSAGAKYQIECTMCSACDNPCGQYLSP 60

Query: 61 PPPPPSPPPP 70
          PPPPPSPPPP
Sbjct: 61 PPPPPSPPPP 70

[Close]

BLAST of CsGy3G014910 vs. ExPASy TrEMBL
Match: A0A6J1GVF6 (leucine-rich repeat extensin-like protein 6 OS=Cucurbita moschata OX=3662 GN=LOC111457543 PE=4 SV=1)

HSP 1 Score: 105 bits (261), Expect = 5.50e-26
Identity = 54/69 (78.26%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSP 60
          MET I L+F ISLTA+LL FP+G SSLP    R+ AGAKYQIECTMCSACDNPC QYLSP
Sbjct: 1  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP 60

Query: 61 PPPPPSPPP 69
          PPPPPSPPP
Sbjct: 61 PPPPPSPPP 69

[Close]

BLAST of CsGy3G014910 vs. ExPASy TrEMBL
Match: A0A6J1IXZ9 (leucine-rich repeat extensin-like protein 6 OS=Cucurbita maxima OX=3661 GN=LOC111479480 PE=4 SV=1)

HSP 1 Score: 102 bits (253), Expect = 8.81e-25
Identity = 53/69 (76.81%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSP 60
          MET I L+F ISLTA+LL F +G SSLP    R+ AGAKYQIECTMCSACDNPC QYLSP
Sbjct: 1  METAISLKFFISLTAVLLSFTAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLSP 60

Query: 61 PPPPPSPPP 69
          PPPPPSPPP
Sbjct: 61 PPPPPSPPP 69

[Close]

BLAST of CsGy3G014910 vs. ExPASy TrEMBL
Match: A0A6J1C7N8 (leucine-rich repeat extensin-like protein 3 OS=Momordica charantia OX=3673 GN=LOC111009142 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.30e-22
Identity = 51/73 (69.86%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGA---KYQIECTMCSACDNPCAQY 60
          ME   PL+FL+ L A+LL+FP+ + SLP    R+SAGA   KYQIECTMCSACDNPC QY
Sbjct: 1  MENGAPLRFLLPLAAVLLIFPATLWSLPATDRRTSAGAVSSKYQIECTMCSACDNPCGQY 60

Query: 61 LSPPPPPPSPPPP 70
          LSPPPPPPSPPPP
Sbjct: 61 LSPPPPPPSPPPP 73

[Close]

BLAST of CsGy3G014910 vs. TAIR 10
Match: AT4G16140.1 (proline-rich family protein )

HSP 1 Score: 47.4 bits (111), Expect = 9.7e-06
Identity = 29/55 (52.73%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 43 ECTMCSACDNPCAQYLSPPPPP--PSPPPPSTVRPRLLLPAPAPTTTTLPPTSST 96
          +CTMC++CDNPC    SPPPPP  PSPPPPS            PTTT  PP  S+
Sbjct: 30 DCTMCTSCDNPCQPNPSPPPPPSNPSPPPPS------------PTTTACPPPPSS 72

[Close]

BLAST of CsGy3G014910 vs. TAIR 10
Match: AT5G49280.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 45.4 bits (106), Expect = 3.7e-05
Identity = 28/52 (53.85%), Postives = 31/52 (59.62%), Query Frame = 0


Query: 42 IECTMCSACDNPCAQYLSPPPPPPSPPPPSTVRPRLLLPAPAPTTTTLPPTS 94
          + CTMCS+CDNPC+   S  PPPPSPPPPST           PTT   PP S
Sbjct: 31 VSCTMCSSCDNPCSPVQS-SPPPPSPPPPST-----------PTTACPPPPS 70

The following BLAST results are available for this feature:

BLAST of CsGy3G014910 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G014910 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57146.1	8.20e-39	100.00	hypothetical protein Csa_010613 [Cucumis sativus]	[more]
KAA0049526.1	2.03e-29	85.71	Nutrient reservoir [Cucumis melo var. makuwa]	[more]
XP_038906774.1	5.11e-26	78.38	leucine-rich repeat extensin-like protein 6 [Benincasa hispida]	[more]
XP_022955565.1	1.14e-25	78.26	leucine-rich repeat extensin-like protein 6 [Cucurbita moschata]	[more]
XP_023526139.1	9.10e-25	76.81	leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy3G014910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAN7	3.97e-39	100.00	Nutrient reservoir OS=Cucumis sativus OX=3659 GN=Csa_3G165630 PE=4 SV=1	[more]
A0A5A7U5R9	9.83e-30	85.71	Nutrient reservoir OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G0...	[more]
A0A6J1GVF6	5.50e-26	78.26	leucine-rich repeat extensin-like protein 6 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1IXZ9	8.81e-25	76.81	leucine-rich repeat extensin-like protein 6 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1C7N8	2.30e-22	69.86	leucine-rich repeat extensin-like protein 3 OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of CsGy3G014910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16140.1	9.7e-06	52.73	proline-rich family protein	[more]
AT5G49280.1	3.7e-05	53.85	hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G014910.2	CsGy3G014910.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane