CsGy3G014605 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy3G014605
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPentatricopeptide repeat-containing protein
LocationGy14Chr3: 10768579 .. 10769224 (-)
RNA-Seq ExpressionCsGy3G014605
SyntenyCsGy3G014605
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGACCTGCATACAAACGACTGCTGAGAGATGGAAGAAGGCTTCTGCTCTTCCTCTGCGCCTTCATTTGTCTTCCATGGTTGAGCTTCTCGTATTTCAGCTCATTCTATCACTGCAAATTCTCGAGGGTTACACTCTCTTATTCCGCTCGCTTGACTATTCAATTTGCGCGGTTCATCTGCCTCACTTGTTCATCGGTAATGTTCACTTTCAGCATCACATTTGCAGTCTGGAAATTTGAAATTTGTGAAGTGAAGAACTTTCTTGGGCTTTTAATGACTACCCACATGATTTTTTATGGCGGGGAATTGGAATTACGTTTGTTCTTGCCATATTCAGTTTTTGGTTTATATGTTATGGAAGTATGTTGTCTGAATGAAGAGGTTCTTCGTTGTTTTCATGAATAGACATTTATCTTTCTTAATTATGAATTCATTTTTCTTGATATGAAACATTTATTTTGTTCATTTTTGTCATCAGTACTTGAGTATGAGTTAGGGAGATTGTATCTTTGTCCTTCTACATTCCTTTGTTCAATGTGATCACAATTCGCTGTTATTACATTAATCTATTTCATCATTGTTCACGACATCCATTTTCTATTTAGGGACTTCTAACGCTGCTTTGTAATTTCAGGTGTATAA

mRNA sequence

ATGGTGACCTGCATACAAACGACTGCTGAGAGATGGAAGAAGGCTTCTGCTCTTCCTCTGCGCCTTCATTTGTCTTCCATGGTTGAGCTTCTCGTATTTCAGCTCATTCTATCACTGCAAATTCTCGAGGGTTACACTCTCTTATTCCGCTCGCTTGACTATTCAATTTGCGCGGTTCATCTGCCTCACTTGTTCATCGGTGTATAA

Coding sequence (CDS)

ATGGTGACCTGCATACAAACGACTGCTGAGAGATGGAAGAAGGCTTCTGCTCTTCCTCTGCGCCTTCATTTGTCTTCCATGGTTGAGCTTCTCGTATTTCAGCTCATTCTATCACTGCAAATTCTCGAGGGTTACACTCTCTTATTCCGCTCGCTTGACTATTCAATTTGCGCGGTTCATCTGCCTCACTTGTTCATCGGTGTATAA

Protein sequence

MVTCIQTTAERWKKASALPLRLHLSSMVELLVFQLILSLQILEGYTLLFRSLDYSICAVHLPHLFIGV*
Homology
[Close]
BLAST of CsGy3G014605 vs. NCBI nr
Match: KGN57113.1 (hypothetical protein Csa_011647 [Cucumis sativus])

HSP 1 Score: 132 bits (332), Expect = 1.10e-38
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MVTCIQTTAERWKKASALPLRLHLSSMVELLVFQLILSLQILEGYTLLFRSLDYSICAVH 60
          MVTCIQTTAERWKKASALPLRLHLSSMVELLVFQLILSLQILEGYTLLFRSLDYSICAVH
Sbjct: 1  MVTCIQTTAERWKKASALPLRLHLSSMVELLVFQLILSLQILEGYTLLFRSLDYSICAVH 60

Query: 61 LPHLFIGV 68
          LPHLFIGV
Sbjct: 61 LPHLFIGV 68

[Close]
BLAST of CsGy3G014605 vs. NCBI nr
Match: KAA0049498.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK16178.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (279), Expect = 1.09e-26
Identity = 58/67 (86.57%), Postives = 61/67 (91.04%), Query Frame = 0 

Query: 1  MVTCIQTTAERWKKASALPLRLHLSSMVELLVFQLILSLQILEGYTLLFRSLDYSICAVH 60
          M+TCIQTTAERWK ASAL LRLH SSMVELL FQLI SLQIL+GYTLL RS+DYSICAVH
Sbjct: 1  MMTCIQTTAERWKAASALRLRLHFSSMVELLPFQLIPSLQILKGYTLLCRSIDYSICAVH 60

Query: 61 LPHLFIG 67
          LPHLFIG
Sbjct: 61 LPHLFIG 67

[Close]
BLAST of CsGy3G014605 vs. ExPASy TrEMBL
Match: A0A0A0L5T9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154360 PE=4 SV=1)

HSP 1 Score: 132 bits (332), Expect = 5.31e-39
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MVTCIQTTAERWKKASALPLRLHLSSMVELLVFQLILSLQILEGYTLLFRSLDYSICAVH 60
          MVTCIQTTAERWKKASALPLRLHLSSMVELLVFQLILSLQILEGYTLLFRSLDYSICAVH
Sbjct: 1  MVTCIQTTAERWKKASALPLRLHLSSMVELLVFQLILSLQILEGYTLLFRSLDYSICAVH 60

Query: 61 LPHLFIGV 68
          LPHLFIGV
Sbjct: 61 LPHLFIGV 68

[Close]
BLAST of CsGy3G014605 vs. ExPASy TrEMBL
Match: A0A5D3CY28 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001060 PE=4 SV=1)

HSP 1 Score: 112 bits (279), Expect = 5.25e-27
Identity = 58/67 (86.57%), Postives = 61/67 (91.04%), Query Frame = 0 

Query: 1  MVTCIQTTAERWKKASALPLRLHLSSMVELLVFQLILSLQILEGYTLLFRSLDYSICAVH 60
          M+TCIQTTAERWK ASAL LRLH SSMVELL FQLI SLQIL+GYTLL RS+DYSICAVH
Sbjct: 1  MMTCIQTTAERWKAASALRLRLHFSSMVELLPFQLIPSLQILKGYTLLCRSIDYSICAVH 60

Query: 61 LPHLFIG 67
          LPHLFIG
Sbjct: 61 LPHLFIG 67

The following BLAST results are available for this feature:
BLAST of CsGy3G014605 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy3G014605 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57113.11.10e-38100.00hypothetical protein Csa_011647 [Cucumis sativus][more]
KAA0049498.11.09e-2686.57pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK16178... [more]
BLAST of CsGy3G014605 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5T95.31e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154360 PE=4 SV=1[more]
A0A5D3CY285.25e-2786.57Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
BLAST of CsGy3G014605 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G014605.1CsGy3G014605.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane