CsGy3G014605 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G014605
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Pentatricopeptide repeat-containing protein
Location	Gy14Chr3: 10768579 .. 10769224 (-)
RNA-Seq Expression	CsGy3G014605
Synteny	CsGy3G014605

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGACCTGCATACAAACGACTGCTGAGAGATGGAAGAAGGCTTCTGCTCTTCCTCTGCGCCTTCATTTGTCTTCCATGGTTGAGCTTCTCGTATTTCAGCTCATTCTATCACTGCAAATTCTCGAGGGTTACACTCTCTTATTCCGCTCGCTTGACTATTCAATTTGCGCGGTTCATCTGCCTCACTTGTTCATCGGTAATGTTCACTTTCAGCATCACATTTGCAGTCTGGAAATTTGAAATTTGTGAAGTGAAGAACTTTCTTGGGCTTTTAATGACTACCCACATGATTTTTTATGGCGGGGAATTGGAATTACGTTTGTTCTTGCCATATTCAGTTTTTGGTTTATATGTTATGGAAGTATGTTGTCTGAATGAAGAGGTTCTTCGTTGTTTTCATGAATAGACATTTATCTTTCTTAATTATGAATTCATTTTTCTTGATATGAAACATTTATTTTGTTCATTTTTGTCATCAGTACTTGAGTATGAGTTAGGGAGATTGTATCTTTGTCCTTCTACATTCCTTTGTTCAATGTGATCACAATTCGCTGTTATTACATTAATCTATTTCATCATTGTTCACGACATCCATTTTCTATTTAGGGACTTCTAACGCTGCTTTGTAATTTCAGGTGTATAA

mRNA sequence

ATGGTGACCTGCATACAAACGACTGCTGAGAGATGGAAGAAGGCTTCTGCTCTTCCTCTGCGCCTTCATTTGTCTTCCATGGTTGAGCTTCTCGTATTTCAGCTCATTCTATCACTGCAAATTCTCGAGGGTTACACTCTCTTATTCCGCTCGCTTGACTATTCAATTTGCGCGGTTCATCTGCCTCACTTGTTCATCGGTGTATAA

Coding sequence (CDS)

ATGGTGACCTGCATACAAACGACTGCTGAGAGATGGAAGAAGGCTTCTGCTCTTCCTCTGCGCCTTCATTTGTCTTCCATGGTTGAGCTTCTCGTATTTCAGCTCATTCTATCACTGCAAATTCTCGAGGGTTACACTCTCTTATTCCGCTCGCTTGACTATTCAATTTGCGCGGTTCATCTGCCTCACTTGTTCATCGGTGTATAA

Protein sequence

MVTCIQTTAERWKKASALPLRLHLSSMVELLVFQLILSLQILEGYTLLFRSLDYSICAVHLPHLFIGV*

Homology

[Close]

BLAST of CsGy3G014605 vs. NCBI nr
Match: KGN57113.1 (hypothetical protein Csa_011647 [Cucumis sativus])

HSP 1 Score: 132 bits (332), Expect = 1.10e-38
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MVTCIQTTAERWKKASALPLRLHLSSMVELLVFQLILSLQILEGYTLLFRSLDYSICAVH 60
          MVTCIQTTAERWKKASALPLRLHLSSMVELLVFQLILSLQILEGYTLLFRSLDYSICAVH
Sbjct: 1  MVTCIQTTAERWKKASALPLRLHLSSMVELLVFQLILSLQILEGYTLLFRSLDYSICAVH 60

Query: 61 LPHLFIGV 68
          LPHLFIGV
Sbjct: 61 LPHLFIGV 68

[Close]

BLAST of CsGy3G014605 vs. NCBI nr
Match: KAA0049498.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK16178.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (279), Expect = 1.09e-26
Identity = 58/67 (86.57%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MVTCIQTTAERWKKASALPLRLHLSSMVELLVFQLILSLQILEGYTLLFRSLDYSICAVH 60
          M+TCIQTTAERWK ASAL LRLH SSMVELL FQLI SLQIL+GYTLL RS+DYSICAVH
Sbjct: 1  MMTCIQTTAERWKAASALRLRLHFSSMVELLPFQLIPSLQILKGYTLLCRSIDYSICAVH 60

Query: 61 LPHLFIG 67
          LPHLFIG
Sbjct: 61 LPHLFIG 67

[Close]

BLAST of CsGy3G014605 vs. ExPASy TrEMBL
Match: A0A0A0L5T9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154360 PE=4 SV=1)

HSP 1 Score: 132 bits (332), Expect = 5.31e-39
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MVTCIQTTAERWKKASALPLRLHLSSMVELLVFQLILSLQILEGYTLLFRSLDYSICAVH 60
          MVTCIQTTAERWKKASALPLRLHLSSMVELLVFQLILSLQILEGYTLLFRSLDYSICAVH
Sbjct: 1  MVTCIQTTAERWKKASALPLRLHLSSMVELLVFQLILSLQILEGYTLLFRSLDYSICAVH 60

Query: 61 LPHLFIGV 68
          LPHLFIGV
Sbjct: 61 LPHLFIGV 68

[Close]

BLAST of CsGy3G014605 vs. ExPASy TrEMBL
Match: A0A5D3CY28 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001060 PE=4 SV=1)

HSP 1 Score: 112 bits (279), Expect = 5.25e-27
Identity = 58/67 (86.57%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MVTCIQTTAERWKKASALPLRLHLSSMVELLVFQLILSLQILEGYTLLFRSLDYSICAVH 60
          M+TCIQTTAERWK ASAL LRLH SSMVELL FQLI SLQIL+GYTLL RS+DYSICAVH
Sbjct: 1  MMTCIQTTAERWKAASALRLRLHFSSMVELLPFQLIPSLQILKGYTLLCRSIDYSICAVH 60

Query: 61 LPHLFIG 67
          LPHLFIG
Sbjct: 61 LPHLFIG 67

The following BLAST results are available for this feature:

BLAST of CsGy3G014605 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G014605 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57113.1	1.10e-38	100.00	hypothetical protein Csa_011647 [Cucumis sativus]	[more]
KAA0049498.1	1.09e-26	86.57	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK16178...	[more]

BLAST of CsGy3G014605 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5T9	5.31e-39	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154360 PE=4 SV=1	[more]
A0A5D3CY28	5.25e-27	86.57	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of CsGy3G014605 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G014605.1	CsGy3G014605.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane