CsGy3G013960 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy3G013960
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionserine/arginine-rich SC35-like splicing factor SCL28
LocationGy14Chr3: 10361319 .. 10366772 (+)
RNA-Seq ExpressionCsGy3G013960
SyntenyCsGy3G013960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAATTCTTAAAGAAAAGAAACGAAAACAGAATCAAACAAAATGTTATAAAATTTGCCTAAAATCCCCAAATCTCACCGATCATGTCATGGGTGGACGTTTAAATCTTGAAGCGTAGGGTTTAGGGCATGATTTTATCTCCAACCCGATCGTCTCCCTCCCTCCAAAATATTCGAAGCCCATCATTCAACTCATTTTCATTCTCCCAAACTCCCATTAGGGTTAGGGTTTTCACTGCTTCAGCTTCCGAGTAAGACACGCTAATAACCCACTATGGCCAGGTACCGGAGCCGGAGTAGAAGTTACAGCCCTCGCCGGCGTAGTAGAACCCCACCACGCGGTCGGAAGAGGTATGACGACGACCCTCGAGACCGGTACCGCGAAAGCAGGTCTCATAGGGACCGTCGCTCTCCTGCTCCTTCTGGTTTACTCGTGCGAAATCTCCCGCTTGATGCTAGGTATTTCATGTTCTTCTTCGAGCCCTTTCTATTATTGATAATGTCTCGCTTTGTTAGTTTGATGGAGGAATTGAATGCCTCATTTGCTTTCGTGTTTGTACATACTAGTGCATTTTTGTTTAGAATCTGGAATTTTGGGCAGGCTGTATAGGGGGACTTACCGTATGAATTTTGATTAGTAGTCATTTGAAGAGTTGATCACAAAGAGCATTTGTTGCAAGTAATTTATTGTCAAGCCGTGTGCTATCGTACTACATTGTATTGTTTTCTCGTTTTCTGTAGTCTATCCATTCTATATATTAAGAGGAATGATTGAGTGTTTTCATTGTGTACCATGCAGGCCGGAAGATCTTAGGATCCCTTTTGAGCGATTTGGTCCTGTTAAGGACGTGTATCTGCCGAAGAACTACTACACTGGGTATGGCCGCTTTCATGTTAACGTGTGCGCTTTTGGGTGTTGAAGAAACCACTTTATTATTTCCTGGTATTTTTTTCTCTTAATTATCGGGGTATCCACACTAGATAACAGAGTTTTGGCTATATTAGTTATGGAAGAAAAAAGTTGAGAAAATGTTTGAGATTAAGTTGTGGGATCTTAATTTCGGAGCCCTGCTGGAGTTTTAACGATTAAATTTCCTTTACCATCATGTAATTATTTGGTTAAGATCGACAACTAGTCAATCTGAAAGAATGAAGTGTAGCGTTTTCTGCATATGGAAGGAATCTGCAAATTTATCGGATAACCTGAACTTAGTTCACACTTAATCCTAGAGAGGATGAATTGACTGACAAGGAATTATTTGTAGGATAATGATGTGTTTGTTAGTCTATAATAGCAGTGATCAACAAGAAAGAAATTCCTGAAGCGTGTGTGAATTAGTTGAGTTGTCAGTGGCTCTGCATTAAATATGTGTCTAAAAGTTAATACTGCCTGGCAACCCTTTCTGGTTATTACTTATTAGTACAGAGATCTACTTTGCTTTCTCTCACCTTATGATATCATTCTCTTTATTGCCTATTTGTAGGGAGCCTCGAGGATTTGGATTTGTGAAGTTTCGGTTTGCAGAAGACGCGGCTGAAGCAAAACAGCAGCTAAATCATACAGTTATAGGTGGACGGGAGATACGAATCGTGTTTGCTGAGGAGAACAGGAAAACTCCTCAAGAAATGCGTGTGACTTCACGCTCAAGGTTCAATGGCCTTCCTCTTAACTTCTAATCATGTAGTATCTTTTTGTTGAATATCTTCTTCATGAAACCAATTTCTTTAACTTTGATCTATTATATTGATTGTCTCTTGTTTCTCATATACAGTGGTAGAAGCTACAGAAGACGTTCTCCAGCAAGGTCTCCGAGACGGCGAAATCGTTGTTAGTGTCAATGCATTTATCTTTCTTCTTTCTTTCCTTTTTGCTGACTTTCATGACAAAAATTGCATTGGGTTGATGATCTTTGATGTTATCATCGTGATGCAATATTGTAATTAGACCCTTGATTTTTATTCTCAACCAGCCTTTTGTATTTGACTGCAGCTTACTCGCGCTCACCTTCACCTGCCAGGCACGACTCAAGGTTGGATCTTATTTATCATACTTGTTTTACTTCTAGCAAGACTAACATCATTATCGTCCTGCCGTTTCCATTACTTCTTACTTTTGTACATTTTTTTGAAATATTGGTTGTTCCTGTCTTGATGTTTACTTGTTTAGTAAGCTGCACATGCCTTCTTTGAATTTTATAATTTTGTACTAGCATTCTTTTTGGATGAGAAGCATTGTATAATATTTTTGAAATTTTGTACTTGTCTTATATAGAGTACCCAAACGCCAAAGCCCCAAAATGGAAGTGCTTATTCCTTGTTTTAATTTTCAGTGGAACCAAAATGATTGTCTGTAAATTTTATGTACAATTAAGTTCATTTTTGGTGAAAATCATTTTTGTAGAAATATTCCAATATACTCAATGTAATTATATTTTCGACCAGAACCTCAAGACTTCCGTTTTGTTCAAAAAACCTCTTACAATTTTAAGTAACAAAATCCATTTCTAATGGATGAGCCATCTTTGTTCCTTTGTCATGTTGTGAAGTGCATAGTCAGTAAATATAAGTAGCACTCTGTGGTTTCTGAAATGATTATAATCTCTTTCGTCATTCGTATAATCACTCAAAAAATGCTTTTAATCATTTAAAATCAATTTTGTAGTCTGAAAAATGCATTTAAGAGTGAAAATTAAAAATTGAATTGATTTTGTGTGACTAAAGGTGTTGTGTTTCAAAGTGACTGTAGTACATGACAAGTGATTTTAACAATTTCAAAATCACACTCAAACATGCACTAAACATTGGTATCAGTCTGACAATAATTTTGACACTTCTAATTTTCATTTCCCCATCAGGTTTATAACATCAAAGCTATATATTAATTCTAAGCAACAGTTTCAGTTTTTTGTTGTTTTACAGGCTTTAGTTGTAGAATTTTTATATCATATGCTTGAATGTTATCATGGATAAGCAAAAACACAGAATTTAATGTTTGATTTGATGCACGTGGAATATTCTACTCCCTTCATGGTACAGAGTTGCATTGCAGGACATTGTATACAATCTACTTGATTCCTTGTTTATGCAGATATTAAAGTGTAAAGGGAGACTTTAAAGACTTGTTGATTAATAAAGTTTAACAAGAAAAGCGATCATAAAGTGATGGGCAACTTGCTTACTTTACCTATCGAACCCTCTCCATGAGTACAATCTATTACTTTTTTAATTACATTAGTTGCATGGTTTTTTATCGTTTGTTTACATCTGTTTTTTTAGGCAGAAGTTGAGCATTGACGAGAGTTTTAAATCAAATTTTATCTCTGGTTCTTTTTTCCCCATTTTTTCCTCCCTTACAAATCTCAACCATTTATCAGCAAGAAAGTGATCTTTAAGTTTGATATCTTCTTTTGCATATACTATCCAGTTAAGAAAGATTAGAGCTTATAGTTGGCCAAAGAAAGAAATCATCTTCAAAGGAGAAAAGGCCAAAGTTTTACTGGTTGTCGTATGGTGACATTGTCCAAGAAAAGATAATGTGTTTTTTAGAAAGTTGGGGCAAAGAGAGCTATGAACTTGTCAGAAGCTGATCAACCAGTACAGCTTAATAGAGCATAATTCTCAGTGTTTGGATCTACTTGTCATTATTTTGTTCGGAAACCTGAAAATGGTGCAGGTAAAAGTCATGTTTTAGTTGATCAGTTTTGAAAATGATGTTGATAGAAAATTGTGCTTATAAAAGTATGATCAAGTATCATAAGTACCTATTGAACGTACCTCATTGGGGCCTTTGAAGACTGCTTGGACAGGTTTTCTTTCCTGTTAGAGAGAGAGTTGGTTTTTTGTGTTTCAATTCTGAATGAAAATCGTTTCTGTTTTATATGTTGATTTTCGTAATTTTTTTTTGTTGTTGTTGTGCATGATGCAGGAGCCGTGGGGCAAGGGATGAGTATCTATCTCCTGCACGATCAAGATCAATTTCACATTCTCGTTCCCCTCGTGATAGGCGGGATTACAGCCGATCTCCTACTCCGAAGGATAATGGTCGTAGCCCTCGTGAAGTGGACAATGCACGGAGTAGATCAAGGAGTCCAAAGGGTGATAGTCGTAGTCCTTCTGGATCTCGTTCACGATCCTATAGGTATTTTGCCTTTTATGCTCCTTTACATTTTAAGTTTCCTTTTCTTATCTCTGCATTTCTGAGTAAGAGGATCTACACAGGGAAGTGCGTGTCGTACGTGTTGGTACTGGTAGTTTCAGAATTCATGGTGATTCTTTAAACTAAATAATTAAGTGTTATATTATTGTTTCATTTTACCTTGGTGAGAGAGACCTATGGTAGGATAGATGTCTGATATATAGGGCTAAGCTAATCTCCTAGAATATATAGACTGTTTAAGATGGAGGATGAACAGAGCTTTATTTAATAAGCTCTCACGATTCATGATATTCTCACAGGTGTTTGTTGAATTTAATTGGTTAGAAGAGGTGAGGAAGAAATGACATGTTTGAATCATTTGGTTTTTTCCTCCTTTGTTTCTTCGGTTATCTGTTGATCTTGTAGAATTTAGTGAAACCCTTTGGAGAGATTTTAATTCATTTCCTAATGTTCGCACTTCAATACAATATAAACTGGGGATGAGATTTGAGATCCCCTTGGTTAAGGGGGCAGCAAAATTCTTGACGTTGTTTTGTCATTATTGAACATTTCACACGTTCCACAGTGTGTTGTGTTTAGGCAGTAATCCTTTCCCCTGCTTAATTGAAGAATTTAAAATTTTGACTAACACCCTGCAATGTTGCTTCTGCAGTCCTCGCTGATAGAGTTTTGGAATTGTGTGGTGATTCTGCTGCAGTCAGTCGAGAATTGTTAAGTCTGCCTTCAGTTGTGGCCAGATGAACTATGCTATTCCATGCTTTGCAGTTTCTGTAAGGAATTTTATTTATATATGAGAGTAGGGAGGCGAGACTTGAGATATGGATTGAAGAACAATGAGTGTTGACTTCATATGAGTGCATGCTGGTACACTTCTACTTGACCTTTACTAGATTTAGGAAATTTGCCTTAAATTTCGTTTTTGTACTCTTGTACATACTCAGTGGTTGTATTTTTCAACTTAGTGGTCTTGTTTGTTTAATTATCAGTTCTATTTTGTTATTTAGTAATCCCTTTTCCCTTCCATTTTCTTTTCCAAAATTTGAACTCAGCAGTGCTAAAATAGAAACATAATCAATGAACATCCACTTTTTGAATGATAATAGGGTGCATTATTGAATGACTACATAATTATTTTGGTCTTAACGATCTTACTTGATCAAGATATGCTCTATAGGCTGTACAGTTGTCTTTAAATTCTAAGGAGATAATTTTTTGTTTCTAGAAATCATAGTGGAAAATCAACCTATTTGGTACTTAAGTTCTTATTTATGGTTTACTCTTCCCTTCGAGTTCTAGAGT

mRNA sequence

GAAAATTCTTAAAGAAAAGAAACGAAAACAGAATCAAACAAAATGTTATAAAATTTGCCTAAAATCCCCAAATCTCACCGATCATGTCATGGGTGGACGTTTAAATCTTGAAGCGTAGGGTTTAGGGCATGATTTTATCTCCAACCCGATCGTCTCCCTCCCTCCAAAATATTCGAAGCCCATCATTCAACTCATTTTCATTCTCCCAAACTCCCATTAGGGTTAGGGTTTTCACTGCTTCAGCTTCCGAGTAAGACACGCTAATAACCCACTATGGCCAGGTACCGGAGCCGGAGTAGAAGTTACAGCCCTCGCCGGCGTAGTAGAACCCCACCACGCGGTCGGAAGAGGTATGACGACGACCCTCGAGACCGGTACCGCGAAAGCAGGTCTCATAGGGACCGTCGCTCTCCTGCTCCTTCTGGTTTACTCGTGCGAAATCTCCCGCTTGATGCTAGGCCGGAAGATCTTAGGATCCCTTTTGAGCGATTTGGTCCTGTTAAGGACGTGTATCTGCCGAAGAACTACTACACTGGGGAGCCTCGAGGATTTGGATTTGTGAAGTTTCGGTTTGCAGAAGACGCGGCTGAAGCAAAACAGCAGCTAAATCATACAGTTATAGGTGGACGGGAGATACGAATCGTGTTTGCTGAGGAGAACAGGAAAACTCCTCAAGAAATGCGTGTGACTTCACGCTCAAGTGGTAGAAGCTACAGAAGACGTTCTCCAGCAAGGTCTCCGAGACGGCGAAATCGTTCTTACTCGCGCTCACCTTCACCTGCCAGGCACGACTCAAGGAGCCGTGGGGCAAGGGATGAGTATCTATCTCCTGCACGATCAAGATCAATTTCACATTCTCGTTCCCCTCGTGATAGGCGGGATTACAGCCGATCTCCTACTCCGAAGGATAATGGTCGTAGCCCTCGTGAAGTGGACAATGCACGGAGTAGATCAAGGAGTCCAAAGGGTGATAGTCGTAGTCCTTCTGGATCTCGTTCACGATCCTATAGTCCTCGCTGATAGAGTTTTGGAATTGTGTGGTGATTCTGCTGCAGTCAGTCGAGAATTGTTAAGTCTGCCTTCAGTTGTGGCCAGATGAACTATGCTATTCCATGCTTTGCAGTTTCTGTAAGGAATTTTATTTATATATGAGAGTAGGGAGGCGAGACTTGAGATATGGATTGAAGAACAATGAGTGTTGACTTCATATGAGTGCATGCTGGTACACTTCTACTTGACCTTTACTAGATTTAGGAAATTTGCCTTAAATTTCGTTTTTGTACTCTTGTACATACTCAGTGGTTGTATTTTTCAACTTAGTGGTCTTGTTTGTTTAATTATCAGTTCTATTTTGTTATTTAGTAATCCCTTTTCCCTTCCATTTTCTTTTCCAAAATTTGAACTCAGCAGTGCTAAAATAGAAACATAATCAATGAACATCCACTTTTTGAATGATAATAGGGTGCATTATTGAATGACTACATAATTATTTTGGTCTTAACGATCTTACTTGATCAAGATATGCTCTATAGGCTGTACAGTTGTCTTTAAATTCTAAGGAGATAATTTTTTGTTTCTAGAAATCATAGTGGAAAATCAACCTATTTGGTACTTAAGTTCTTATTTATGGTTTACTCTTCCCTTCGAGTTCTAGAGT

Coding sequence (CDS)

ATGGCCAGGTACCGGAGCCGGAGTAGAAGTTACAGCCCTCGCCGGCGTAGTAGAACCCCACCACGCGGTCGGAAGAGGTATGACGACGACCCTCGAGACCGGTACCGCGAAAGCAGGTCTCATAGGGACCGTCGCTCTCCTGCTCCTTCTGGTTTACTCGTGCGAAATCTCCCGCTTGATGCTAGGCCGGAAGATCTTAGGATCCCTTTTGAGCGATTTGGTCCTGTTAAGGACGTGTATCTGCCGAAGAACTACTACACTGGGGAGCCTCGAGGATTTGGATTTGTGAAGTTTCGGTTTGCAGAAGACGCGGCTGAAGCAAAACAGCAGCTAAATCATACAGTTATAGGTGGACGGGAGATACGAATCGTGTTTGCTGAGGAGAACAGGAAAACTCCTCAAGAAATGCGTGTGACTTCACGCTCAAGTGGTAGAAGCTACAGAAGACGTTCTCCAGCAAGGTCTCCGAGACGGCGAAATCGTTCTTACTCGCGCTCACCTTCACCTGCCAGGCACGACTCAAGGAGCCGTGGGGCAAGGGATGAGTATCTATCTCCTGCACGATCAAGATCAATTTCACATTCTCGTTCCCCTCGTGATAGGCGGGATTACAGCCGATCTCCTACTCCGAAGGATAATGGTCGTAGCCCTCGTGAAGTGGACAATGCACGGAGTAGATCAAGGAGTCCAAAGGGTGATAGTCGTAGTCCTTCTGGATCTCGTTCACGATCCTATAGTCCTCGCTGA

Protein sequence

MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSRSRGARDEYLSPARSRSISHSRSPRDRRDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGSRSRSYSPR*
Homology
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BLAST of CsGy3G013960 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.7e-60
Identity = 159/250 (63.60%), Postives = 180/250 (72.00%), Query Frame = 0 

Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MAR RSRSRSYSPR R R+PPR RK YDD   +R RE  S RD  S  PSGLL+RNLPLD
Sbjct: 1   MARARSRSRSYSPRPRDRSPPRERKGYDD---NRLRERPSSRDHESSGPSGLLIRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARP DLR  FERFGP+KD+YLP+NYYTGEPRGFGFVK+R+AEDAAEA +++NH VIGGRE
Sbjct: 61  ARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR--SYRRRSPARSPRRRNRSYSRSPSPARHDSR-SR 180
           I IVFAEENRKTPQEMR T+ +SGR   Y+R S  RSPRRR RS+SRS SP R +SR S+
Sbjct: 121 IAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTS-HRSPRRRYRSHSRSRSPPRRESRHSK 180

Query: 181 GARDEYLSP-ARSRSISHSRSPRDRRDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRS 240
              D+  SP  RSRSIS S  PR+ R+Y        N RSPRE      R  +P   SR 
Sbjct: 181 VREDDLYSPRRRSRSISRSPLPRNEREYK-----SRNCRSPRE-----ERVLTPI-RSRC 235

Query: 241 PSGSRSRSYS 247
            S SRSRS S
Sbjct: 241 LSRSRSRSLS 235

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BLAST of CsGy3G013960 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.6e-38
Identity = 121/248 (48.79%), Postives = 147/248 (59.27%), Query Frame = 0 

Query: 7   RSRSYSPRRRSRTPPR--GRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPE 66
           R RSY+P     +PPR  GR+     PR R+  SR      S  P+ LLVRNL  D R E
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRFGGSRD-----SDLPTSLLVRNLRHDCRQE 61

Query: 67  DLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIV 126
           DLR PFE+FGPVKD+YLP++YYTG+PRGFGF++F    DAAEAK Q++  ++ GRE+ +V
Sbjct: 62  DLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVV 121

Query: 127 FAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSRSRGARDEYL 186
           FAEENRK P EMR   R  GRS R +   RSP R    YSRSP P R   RSR     Y 
Sbjct: 122 FAEENRKKPTEMRTRDR-GGRSNRFQDRRRSPPR----YSRSP-PPRRGRRSRSRSRGYN 181

Query: 187 SPARSRSISHSRSPRDR-----RDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSG 246
           SP   R  S S SP+DR     R YSRSP    +          +S SRSP+   RS S 
Sbjct: 182 SPPAKRHQSRSVSPQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHSRSPR---RSVSP 230

Query: 247 SRSRSYSP 248
            ++RSY+P
Sbjct: 242 RKNRSYTP 230

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BLAST of CsGy3G013960 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.1e-36
Identity = 124/258 (48.06%), Postives = 146/258 (56.59%), Query Frame = 0 

Query: 7   RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDL 66
           R RSY+P     +PPRG  R    P  R R     RD     P+ LLVRNL  D R EDL
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRYGGRSRD----LPTSLLVRNLRHDCRQEDL 61

Query: 67  RIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFA 126
           R  FE+FGPVKD+YLP++YYTG+PRGFGFV+F    DAA+AK  ++  ++ GRE+ +VFA
Sbjct: 62  RKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 121

Query: 127 EENRKTPQEMRVTSRSSGR-SYRRRSPARSPRRRNRSYSRSPSPARHDSRSRGARDEYLS 186
           EENRK P EMR   R  GR   RRR+P        R YSRS SP     RSR    +Y S
Sbjct: 122 EENRKKPTEMRARERGGGRFRDRRRTPP-------RYYSRSRSPPPRRGRSRSRSGDYYS 181

Query: 187 PARSRSISHSRSPRD-----RRDYSRSP-TPKDNGRSPREV---------DNARSRSRSP 246
           P   R    S SPR+     RR YSRSP +    GRS   V            RS SRSP
Sbjct: 182 PPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRRSISRSP 241

Query: 247 KGDSRSPSGSRSRSYSPR 249
           +  SRSPS  R+RS SPR
Sbjct: 242 R-RSRSPSPKRNRSVSPR 242

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BLAST of CsGy3G013960 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.8e-31
Identity = 116/256 (45.31%), Postives = 138/256 (53.91%), Query Frame = 0 

Query: 11  YSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPF 70
           YSP RR     RGR      PR  Y        RR  +   LLVRN+PLD RPE+LR PF
Sbjct: 9   YSPPRRG-YGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPEELREPF 68

Query: 71  ERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFAEENR 130
           ERFGPV+DVY+P++YY+G+PRGF FV+F  A DA EA++ +N     GREI +V A E+R
Sbjct: 69  ERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVASESR 128

Query: 131 KTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPAR-HDSRSRGARDEYLSPARS 190
           K P+EMRV +R+  R           R R+RS SRS SP R  DSRSR  R    SPA  
Sbjct: 129 KRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSR-YRSRSYSPAPR 188

Query: 191 RSISHSRSPRDRRDYSRSPTPKDNGRS------PREVDN---------ARSRSRSPKGDS 249
           R     R   D     RS +P   G +       R  DN         A  R R  +  S
Sbjct: 189 RRGGPPRGEEDENYSRRSYSPGYEGAAAAAPDRDRNGDNEIREKPGYEAEDRRRGGRAVS 248

[Close]
BLAST of CsGy3G013960 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.3e-21
Identity = 86/206 (41.75%), Postives = 112/206 (54.37%), Query Frame = 0 

Query: 50  SGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQ 109
           + L V NL     P+ LR  FE++G V DVY+P++ YT E RGF FV+F    DA +A  
Sbjct: 14  TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73

Query: 110 QLNHTVIGGREIRIVFA--------EENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNR 169
            ++  V+ GRE+R+  A          +R+ P   R  S   GR       +RSPRRR R
Sbjct: 74  AMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRR------SRSPRRRRR 133

Query: 170 SYSRSPSPARHDSRSRGARDEYLSPARSRSISHSRSPRDRRDYSRSPTPKDNGRSPREVD 229
           S SRS S +R  SRSR +R +  S  RSRS S S+S   RR  S+S +   +    R   
Sbjct: 134 SRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRS----RSRS 193

Query: 230 NARSRSRSPKGDSRSPSGSRSRSYSP 248
            +RSRSRSP   S+  S SRSRS SP
Sbjct: 194 RSRSRSRSPPPTSKRESNSRSRSKSP 209

[Close]
BLAST of CsGy3G013960 vs. NCBI nr
Match: XP_004134179.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis sativus])

HSP 1 Score: 455 bits (1171), Expect = 8.43e-161
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0 

Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSRSRGAR 180
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSRSRGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSRSRGAR 180

Query: 181 DEYLSPARSRSISHSRSPRDRRDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240
           DEYLSPARSRSISHSRSPRDRRDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS
Sbjct: 181 DEYLSPARSRSISHSRSPRDRRDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240

Query: 241 RSRSYSPR 248
           RSRSYSPR
Sbjct: 241 RSRSYSPR 248

[Close]
BLAST of CsGy3G013960 vs. NCBI nr
Match: XP_008438778.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis melo])

HSP 1 Score: 451 bits (1159), Expect = 5.68e-159
Identity = 246/248 (99.19%), Postives = 247/248 (99.60%), Query Frame = 0 

Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSRSRGAR 180
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRR RSYSRSPSPARHDSRSRGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRSRGAR 180

Query: 181 DEYLSPARSRSISHSRSPRDRRDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240
           DEYLSPARSRSISHSRSPRDR+DYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS
Sbjct: 181 DEYLSPARSRSISHSRSPRDRQDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240

Query: 241 RSRSYSPR 248
           RSRSYSPR
Sbjct: 241 RSRSYSPR 248

[Close]
BLAST of CsGy3G013960 vs. NCBI nr
Match: KAA0049431.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis melo var. makuwa] >TYK16110.1 serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis melo var. makuwa])

HSP 1 Score: 446 bits (1146), Expect = 1.67e-156
Identity = 243/245 (99.18%), Postives = 244/245 (99.59%), Query Frame = 0 

Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSRSRGAR 180
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRR RSYSRSPSPARHDSRSRGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRSRGAR 180

Query: 181 DEYLSPARSRSISHSRSPRDRRDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240
           DEYLSPARSRSISHSRSPRDR+DYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS
Sbjct: 181 DEYLSPARSRSISHSRSPRDRQDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240

Query: 241 RSRSY 245
           RSRSY
Sbjct: 241 RSRSY 245

[Close]
BLAST of CsGy3G013960 vs. NCBI nr
Match: XP_038878233.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Benincasa hispida])

HSP 1 Score: 439 bits (1129), Expect = 2.20e-154
Identity = 240/248 (96.77%), Postives = 244/248 (98.39%), Query Frame = 0 

Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           M RYRSRSRSYSPRRRSRTPPRGRKR+DDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MGRYRSRSRSYSPRRRSRTPPRGRKRHDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSRSRGAR 180
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRR RSYSRSPSPARHDSRSRGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRSRGAR 180

Query: 181 DEYLSPARSRSISHSRSPRDRRDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240
           +EYLSPARSRSIS SRSPRDRRDYSRSPTPK+NGRSPREVDNARSRSRSP+ DSRSPSGS
Sbjct: 181 EEYLSPARSRSISRSRSPRDRRDYSRSPTPKENGRSPREVDNARSRSRSPRADSRSPSGS 240

Query: 241 RSRSYSPR 248
           RSRSYSPR
Sbjct: 241 RSRSYSPR 248

[Close]
BLAST of CsGy3G013960 vs. NCBI nr
Match: XP_022979912.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita maxima])

HSP 1 Score: 428 bits (1100), Expect = 5.57e-150
Identity = 237/248 (95.56%), Postives = 239/248 (96.37%), Query Frame = 0 

Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSRSRGAR 180
           IRIVFAEENRKTPQEMRVTSRSSGRS RRRSPARSPRRR  SYSRSPSPARHDSRSRGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGAR 180

Query: 181 DEYLSPARSRSISHSRSPRDRRDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240
           DEYLSPARSRSIS S SPRDRRDYSRSPTPK+NGRSPR VD ARSRSRSP+  SRSPSGS
Sbjct: 181 DEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGS 240

Query: 241 RSRSYSPR 248
           RSRSYSPR
Sbjct: 241 RSRSYSPR 248

[Close]
BLAST of CsGy3G013960 vs. ExPASy TrEMBL
Match: A0A1S3AXW0 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo OX=3656 GN=LOC103483786 PE=3 SV=1)

HSP 1 Score: 451 bits (1159), Expect = 2.75e-159
Identity = 246/248 (99.19%), Postives = 247/248 (99.60%), Query Frame = 0 

Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSRSRGAR 180
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRR RSYSRSPSPARHDSRSRGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRSRGAR 180

Query: 181 DEYLSPARSRSISHSRSPRDRRDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240
           DEYLSPARSRSISHSRSPRDR+DYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS
Sbjct: 181 DEYLSPARSRSISHSRSPRDRQDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240

Query: 241 RSRSYSPR 248
           RSRSYSPR
Sbjct: 241 RSRSYSPR 248

[Close]
BLAST of CsGy3G013960 vs. ExPASy TrEMBL
Match: A0A5D3CXM8 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00340 PE=3 SV=1)

HSP 1 Score: 446 bits (1146), Expect = 8.07e-157
Identity = 243/245 (99.18%), Postives = 244/245 (99.59%), Query Frame = 0 

Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSRSRGAR 180
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRR RSYSRSPSPARHDSRSRGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRSRGAR 180

Query: 181 DEYLSPARSRSISHSRSPRDRRDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240
           DEYLSPARSRSISHSRSPRDR+DYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS
Sbjct: 181 DEYLSPARSRSISHSRSPRDRQDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240

Query: 241 RSRSY 245
           RSRSY
Sbjct: 241 RSRSY 245

[Close]
BLAST of CsGy3G013960 vs. ExPASy TrEMBL
Match: A0A6J1IQ05 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita maxima OX=3661 GN=LOC111479462 PE=3 SV=1)

HSP 1 Score: 428 bits (1100), Expect = 2.70e-150
Identity = 237/248 (95.56%), Postives = 239/248 (96.37%), Query Frame = 0 

Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSRSRGAR 180
           IRIVFAEENRKTPQEMRVTSRSSGRS RRRSPARSPRRR  SYSRSPSPARHDSRSRGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGAR 180

Query: 181 DEYLSPARSRSISHSRSPRDRRDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240
           DEYLSPARSRSIS S SPRDRRDYSRSPTPK+NGRSPR VD ARSRSRSP+  SRSPSGS
Sbjct: 181 DEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGS 240

Query: 241 RSRSYSPR 248
           RSRSYSPR
Sbjct: 241 RSRSYSPR 248

[Close]
BLAST of CsGy3G013960 vs. ExPASy TrEMBL
Match: A0A6J1GW11 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita moschata OX=3662 GN=LOC111457670 PE=4 SV=1)

HSP 1 Score: 428 bits (1100), Expect = 2.70e-150
Identity = 236/248 (95.16%), Postives = 239/248 (96.37%), Query Frame = 0 

Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MA+YRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MAKYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSRSRGAR 180
           IRIVFAEENRKTPQEMRVTSRSSGRS RRRSPARSPRRR  SYSRSPSPARHDSRSRGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGAR 180

Query: 181 DEYLSPARSRSISHSRSPRDRRDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240
           DEYLSPARSRSIS S SPRDRRDYSRSPTPK+NGRSPR VD ARSRSRSP+  SRSPSGS
Sbjct: 181 DEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDTARSRSRSPRAASRSPSGS 240

Query: 241 RSRSYSPR 248
           RSRSYSPR
Sbjct: 241 RSRSYSPR 248

[Close]
BLAST of CsGy3G013960 vs. ExPASy TrEMBL
Match: A0A6J1C7W4 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Momordica charantia OX=3673 GN=LOC111009197 PE=3 SV=1)

HSP 1 Score: 421 bits (1082), Expect = 1.49e-147
Identity = 232/248 (93.55%), Postives = 239/248 (96.37%), Query Frame = 0 

Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSR+PPRGRKRYDDDPRDRY ESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLR PFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSRSRGAR 180
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRR RSYSRSPSPARHDSR+RGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGAR 180

Query: 181 DEYLSPARSRSISHSRSPRDRRDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240
           DEYLSPARSRSIS SRSP DRRDYSRSP+PK+NGRSPREVD  RSRSRS + DSRSPSGS
Sbjct: 181 DEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSGS 240

Query: 241 RSRSYSPR 248
           RS+SYSPR
Sbjct: 241 RSQSYSPR 248

[Close]
BLAST of CsGy3G013960 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 232.6 bits (592), Expect = 3.3e-61
Identity = 159/250 (63.60%), Postives = 180/250 (72.00%), Query Frame = 0 

Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MAR RSRSRSYSPR R R+PPR RK YDD   +R RE  S RD  S  PSGLL+RNLPLD
Sbjct: 1   MARARSRSRSYSPRPRDRSPPRERKGYDD---NRLRERPSSRDHESSGPSGLLIRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARP DLR  FERFGP+KD+YLP+NYYTGEPRGFGFVK+R+AEDAAEA +++NH VIGGRE
Sbjct: 61  ARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR--SYRRRSPARSPRRRNRSYSRSPSPARHDSR-SR 180
           I IVFAEENRKTPQEMR T+ +SGR   Y+R S  RSPRRR RS+SRS SP R +SR S+
Sbjct: 121 IAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTS-HRSPRRRYRSHSRSRSPPRRESRHSK 180

Query: 181 GARDEYLSP-ARSRSISHSRSPRDRRDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRS 240
              D+  SP  RSRSIS S  PR+ R+Y        N RSPRE      R  +P   SR 
Sbjct: 181 VREDDLYSPRRRSRSISRSPLPRNEREYK-----SRNCRSPRE-----ERVLTPI-RSRC 235

Query: 241 PSGSRSRSYS 247
            S SRSRS S
Sbjct: 241 LSRSRSRSLS 235

[Close]
BLAST of CsGy3G013960 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 158.7 bits (400), Expect = 6.1e-39
Identity = 121/248 (48.79%), Postives = 147/248 (59.27%), Query Frame = 0 

Query: 7   RSRSYSPRRRSRTPPR--GRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPE 66
           R RSY+P     +PPR  GR+     PR R+  SR      S  P+ LLVRNL  D R E
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRFGGSRD-----SDLPTSLLVRNLRHDCRQE 61

Query: 67  DLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIV 126
           DLR PFE+FGPVKD+YLP++YYTG+PRGFGF++F    DAAEAK Q++  ++ GRE+ +V
Sbjct: 62  DLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVV 121

Query: 127 FAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSRSRGARDEYL 186
           FAEENRK P EMR   R  GRS R +   RSP R    YSRSP P R   RSR     Y 
Sbjct: 122 FAEENRKKPTEMRTRDR-GGRSNRFQDRRRSPPR----YSRSP-PPRRGRRSRSRSRGYN 181

Query: 187 SPARSRSISHSRSPRDR-----RDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSG 246
           SP   R  S S SP+DR     R YSRSP    +          +S SRSP+   RS S 
Sbjct: 182 SPPAKRHQSRSVSPQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHSRSPR---RSVSP 230

Query: 247 SRSRSYSP 248
            ++RSY+P
Sbjct: 242 RKNRSYTP 230

[Close]
BLAST of CsGy3G013960 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 154.1 bits (388), Expect = 1.5e-37
Identity = 124/258 (48.06%), Postives = 146/258 (56.59%), Query Frame = 0 

Query: 7   RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDL 66
           R RSY+P     +PPRG  R    P  R R     RD     P+ LLVRNL  D R EDL
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRYGGRSRD----LPTSLLVRNLRHDCRQEDL 61

Query: 67  RIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFA 126
           R  FE+FGPVKD+YLP++YYTG+PRGFGFV+F    DAA+AK  ++  ++ GRE+ +VFA
Sbjct: 62  RKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 121

Query: 127 EENRKTPQEMRVTSRSSGR-SYRRRSPARSPRRRNRSYSRSPSPARHDSRSRGARDEYLS 186
           EENRK P EMR   R  GR   RRR+P        R YSRS SP     RSR    +Y S
Sbjct: 122 EENRKKPTEMRARERGGGRFRDRRRTPP-------RYYSRSRSPPPRRGRSRSRSGDYYS 181

Query: 187 PARSRSISHSRSPRD-----RRDYSRSP-TPKDNGRSPREV---------DNARSRSRSP 246
           P   R    S SPR+     RR YSRSP +    GRS   V            RS SRSP
Sbjct: 182 PPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRRSISRSP 241

Query: 247 KGDSRSPSGSRSRSYSPR 249
           +  SRSPS  R+RS SPR
Sbjct: 242 R-RSRSPSPKRNRSVSPR 242

[Close]
BLAST of CsGy3G013960 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 145.6 bits (366), Expect = 5.4e-35
Identity = 113/245 (46.12%), Postives = 138/245 (56.33%), Query Frame = 0 

Query: 7   RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDL 66
           R RSY+P     +PPRG  R    P  R R     RD     P+ LLVRNL  D R EDL
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRYGGRSRD----LPTSLLVRNLRHDCRQEDL 61

Query: 67  RIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFA 126
           R  FE+FGPVKD+YLP++YYTG+PRGFGFV+F    DAA+AK  ++  ++ GRE+ +VFA
Sbjct: 62  RKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 121

Query: 127 EENRKTPQEMRVTSRSSGR-SYRRRSPARSPRRRNRSYSRSPSPARHDSRSRGARDEYLS 186
           EENRK P EMR   R  GR   RRR+P        R YSRS SP     RSR    +Y S
Sbjct: 122 EENRKKPTEMRARERGGGRFRDRRRTPP-------RYYSRSRSPPPRRGRSRSRSGDYYS 181

Query: 187 PARSRSISHSRSPRD-----RRDYSRSPTPKDNGRSPREVDNARSRSRSP-KGDSRSPSG 245
           P   R    S SPR+     RR YSRSP            D +R RS +P +G SRS S 
Sbjct: 182 PPPRRHHPRSISPREERYDGRRSYSRSPAS----------DGSRGRSLTPVRGKSRSLSP 220

[Close]
BLAST of CsGy3G013960 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 142.5 bits (358), Expect = 4.5e-34
Identity = 122/269 (45.35%), Postives = 144/269 (53.53%), Query Frame = 0 

Query: 7   RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDL 66
           R RSY+P     +PPRG  R    P  R R     RD     P+ LLVRNL  D R EDL
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRYGGRSRD----LPTSLLVRNLRHDCRQEDL 61

Query: 67  RIPFERFGPVKDVYLPKNYYTG------------EPRGFGFVKFRFAEDAAEAKQQLNHT 126
           R  FE+FGPVKD+YLP++YYTG            +PRGFGFV+F    DAA+AK  ++  
Sbjct: 62  RKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMDGY 121

Query: 127 VIGGREIRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDS 186
           ++ GRE+ +VFAEENRK P EMR   R  G  +R R      R   R YSRS SP     
Sbjct: 122 LLLGRELTVVFAEENRKKPTEMRARERGGGSRFRDRR-----RTPPRYYSRSRSPPPRRG 181

Query: 187 RSRGARDEYLSPARSRSISHSRSPRD-----RRDYSRSP-TPKDNGRSPREV-------- 246
           RSR    +Y SP   R    S SPR+     RR YSRSP +    GRS   V        
Sbjct: 182 RSRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLS 241

Query: 247 -DNARSRSRSPKGDSRSPSGSRSRSYSPR 249
               RS SRSP+  SRSPS  R+RS SPR
Sbjct: 242 PSPRRSISRSPR-RSRSPSPKRNRSVSPR 255

The following BLAST results are available for this feature:
BLAST of CsGy3G013960 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q1PDV24.7e-6063.60Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=... [more]
Q9LHP28.6e-3848.79Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX... [more]
Q9SEU42.1e-3648.06Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=... [more]
Q8L3X87.8e-3145.31Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=... [more]
P303523.3e-2141.75Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV... [more]
BLAST of CsGy3G013960 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004134179.18.43e-161100.00serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis sativus][more]
XP_008438778.15.68e-15999.19PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis melo][more]
KAA0049431.11.67e-15699.18serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis melo var. makuwa] ... [more]
XP_038878233.12.20e-15496.77serine/arginine-rich SC35-like splicing factor SCL28 [Benincasa hispida][more]
XP_022979912.15.57e-15095.56serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita maxima][more]
BLAST of CsGy3G013960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3AXW02.75e-15999.19serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo OX=3656 GN=... [more]
A0A5D3CXM88.07e-15799.18Serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo var. makuwa... [more]
A0A6J1IQ052.70e-15095.56serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita maxima OX=3661... [more]
A0A6J1GW112.70e-15095.16serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita moschata OX=36... [more]
A0A6J1C7W41.49e-14793.55serine/arginine-rich SC35-like splicing factor SCL28 OS=Momordica charantia OX=3... [more]
BLAST of CsGy3G013960 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G18810.13.3e-6163.60SC35-like splicing factor 28 [more]
AT3G13570.16.1e-3948.79SC35-like splicing factor 30A [more]
AT1G55310.11.5e-3748.06SC35-like splicing factor 33 [more]
AT1G55310.25.4e-3546.12SC35-like splicing factor 33 [more]
AT1G55310.34.5e-3445.35SC35-like splicing factor 33 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 51..124
e-value: 1.4E-19
score: 81.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 52..122
e-value: 4.6E-19
score: 68.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 50..128
score: 17.745176
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 51..124
e-value: 0.0012
score: 28.1
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..139
e-value: 1.4E-27
score: 98.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 193..231
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..248
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 232..248
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..54
NoneNo IPR availablePANTHERPTHR23147:SF133SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28coord: 1..248
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 1..248
IPR000221Protamine P1PROSITEPS00048PROTAMINE_P1coord: 2..12
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 47..154

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G013960.2CsGy3G013960.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030154 cell differentiation
biological_process GO:0030261 chromosome condensation
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0007283 spermatogenesis
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016607 nuclear speck
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding