CsGy3G013215 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G013215
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Pentatricopeptide repeat-containing protein
Location	Gy14Chr3: 9892289 .. 9892510 (-)
RNA-Seq Expression	CsGy3G013215
Synteny	CsGy3G013215

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCTCGCTTACGAAGTGCTCTCATCACGATGTATGCAAGCTGTGGCGCCATGGACTTGGCTTGGGATTTGTATGAAAAGATTTCCCCTAAATACATGGTTGTCTTGACTGCCATGGTTTCTGGGCTTGCAAAAGGTGGAAAAATTGGAGATGCTCGCAATGTCTTTGATCAAATGGTGGAGGACTTGATATGTTGGAGTGCAATGATTTCTGGATAG

mRNA sequence

ATGGATCCTCGCTTACGAAGTGCTCTCATCACGATGTATGCAAGCTGTGGCGCCATGGACTTGGCTTGGGATTTGTATGAAAAGATTTCCCCTAAATACATGGTTGTCTTGACTGCCATGGTTTCTGGGCTTGCAAAAGGTGGAAAAATTGGAGATGCTCGCAATGTCTTTGATCAAATGGTGGAGGACTTGATATGTTGGAGTGCAATGATTTCTGGATAG

Coding sequence (CDS)

ATGGATCCTCGCTTACGAAGTGCTCTCATCACGATGTATGCAAGCTGTGGCGCCATGGACTTGGCTTGGGATTTGTATGAAAAGATTTCCCCTAAATACATGGTTGTCTTGACTGCCATGGTTTCTGGGCTTGCAAAAGGTGGAAAAATTGGAGATGCTCGCAATGTCTTTGATCAAATGGTGGAGGACTTGATATGTTGGAGTGCAATGATTTCTGGATAG

Protein sequence

MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVEDLICWSAMISG*

Homology

[Close]

BLAST of CsGy3G013215 vs. ExPASy Swiss-Prot
Match: O23337 (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.7e-14
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           MD  L +AL+TMYA  G MD+A + + K+S + + V TAMVSG +K G++ DA+ +FDQ 
Sbjct: 245 MDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQT 304

Query: 61  -VEDLICWSAMIS 73
             +DL+CW+ MIS
Sbjct: 305 EKKDLVCWTTMIS 317

[Close]

BLAST of CsGy3G013215 vs. ExPASy Swiss-Prot
Match: Q683I9 (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.5e-09
Identity = 28/73 (38.36%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 2   DPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMV 61
           DP +R++L+ MY+SCG +  A  +++    K +    ++V+  AK G I DAR +FD+M 
Sbjct: 96  DPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMP 155

Query: 62  E-DLICWSAMISG 74
           E ++I WS +I+G
Sbjct: 156 ERNVISWSCLING 168

[Close]

BLAST of CsGy3G013215 vs. ExPASy Swiss-Prot
Match: Q9LSB8 (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-08
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 4   RLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM-VE 63
           RL +AL+  YA+CG MD+A  ++  +  + ++  T++V G  + G +  AR  FDQM V 
Sbjct: 272 RLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVR 331

Query: 64  DLICWSAMISG 74
           D I W+ MI G
Sbjct: 332 DRISWTIMIDG 342

[Close]

BLAST of CsGy3G013215 vs. ExPASy Swiss-Prot
Match: Q9LXF2 (Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E40 PE=2 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-08
Identity = 26/70 (37.14%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 5   LRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM-VED 64
           +++ALI  +A+CG + +A +L++  +  + V  ++M SG AK GKI +A  +FD+M  +D
Sbjct: 149 VKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKD 208

Query: 65  LICWSAMISG 74
            + W+ MI+G
Sbjct: 209 QVAWNVMITG 218

[Close]

BLAST of CsGy3G013215 vs. ExPASy Swiss-Prot
Match: O64766 (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E15 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-08
Identity = 28/68 (41.18%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 7   SALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLI 66
           ++++      G +D A +L+E++  + +V  TAMV GLAK GK+ +AR +FD M E ++I
Sbjct: 175 NSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNII 234

Query: 67  CWSAMISG 74
            W+AMI+G
Sbjct: 235 SWNAMITG 242

[Close]

BLAST of CsGy3G013215 vs. NCBI nr
Match: XP_031738996.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g14820, partial [Cucumis sativus])

HSP 1 Score: 153 bits (387), Expect = 1.74e-41
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM
Sbjct: 210 MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 269

Query: 61  VEDLICWSAMISG 73
           VEDLICWSAMISG
Sbjct: 270 VEDLICWSAMISG 282

[Close]

BLAST of CsGy3G013215 vs. NCBI nr
Match: KAE8650357.1 (hypothetical protein Csa_009765 [Cucumis sativus])

HSP 1 Score: 139 bits (349), Expect = 2.25e-40
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 8   ALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVEDLICW 67
           ALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVEDLICW
Sbjct: 66  ALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVEDLICW 125

Query: 68  SAMISG 73
           SAMISG
Sbjct: 126 SAMISG 131

[Close]

BLAST of CsGy3G013215 vs. NCBI nr
Match: KAG7028900.1 (Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129 bits (323), Expect = 7.37e-33
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           MDP L+SALI MYASCG+ DLAWDLYEKISPK MV+ TAMVSGLAKGG+IGDAR VFDQM
Sbjct: 91  MDPHLQSALIKMYASCGSTDLAWDLYEKISPKNMVISTAMVSGLAKGGQIGDARYVFDQM 150

Query: 61  VE-DLICWSAMISG 73
           VE DLICWSAMISG
Sbjct: 151 VEKDLICWSAMISG 164

[Close]

BLAST of CsGy3G013215 vs. NCBI nr
Match: XP_022138165.1 (pentatricopeptide repeat-containing protein At4g14820 [Momordica charantia])

HSP 1 Score: 129 bits (324), Expect = 1.03e-32
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           MDP L+SALITMYASCG+MDLAWDLYEKISPK MVV TAMVSGL+K G+IGDAR VFDQM
Sbjct: 257 MDPHLQSALITMYASCGSMDLAWDLYEKISPKNMVVSTAMVSGLSKCGQIGDARYVFDQM 316

Query: 61  VE-DLICWSAMISG 73
           VE DLICWSAMISG
Sbjct: 317 VEKDLICWSAMISG 330

[Close]

BLAST of CsGy3G013215 vs. NCBI nr
Match: KAG6597439.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129 bits (323), Expect = 1.40e-32
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           MDP L+SALI MYASCG+ DLAWDLYEKISPK MV+ TAMVSGLAKGG+IGDAR VFDQM
Sbjct: 257 MDPHLQSALIKMYASCGSTDLAWDLYEKISPKNMVISTAMVSGLAKGGQIGDARYVFDQM 316

Query: 61  VE-DLICWSAMISG 73
           VE DLICWSAMISG
Sbjct: 317 VEKDLICWSAMISG 330

[Close]

BLAST of CsGy3G013215 vs. ExPASy TrEMBL
Match: A0A0A0L5H9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146580 PE=4 SV=1)

HSP 1 Score: 125 bits (315), Expect = 1.28e-34
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
          MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM
Sbjct: 1  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60

[Close]

BLAST of CsGy3G013215 vs. ExPASy TrEMBL
Match: A0A6J1C8N9 (pentatricopeptide repeat-containing protein At4g14820 OS=Momordica charantia OX=3673 GN=LOC111009402 PE=3 SV=1)

HSP 1 Score: 129 bits (324), Expect = 4.96e-33
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           MDP L+SALITMYASCG+MDLAWDLYEKISPK MVV TAMVSGL+K G+IGDAR VFDQM
Sbjct: 257 MDPHLQSALITMYASCGSMDLAWDLYEKISPKNMVVSTAMVSGLSKCGQIGDARYVFDQM 316

Query: 61  VE-DLICWSAMISG 73
           VE DLICWSAMISG
Sbjct: 317 VEKDLICWSAMISG 330

[Close]

BLAST of CsGy3G013215 vs. ExPASy TrEMBL
Match: A0A6J1H7U5 (pentatricopeptide repeat-containing protein At4g14820 OS=Cucurbita moschata OX=3662 GN=LOC111460103 PE=3 SV=1)

HSP 1 Score: 129 bits (323), Expect = 6.79e-33
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           MDP L+SALI MYASCG+ DLAWDLYEKISPK MV+ TAMVSGLAKGG+IGDAR VFDQM
Sbjct: 257 MDPHLQSALIKMYASCGSTDLAWDLYEKISPKNMVISTAMVSGLAKGGQIGDARYVFDQM 316

Query: 61  VE-DLICWSAMISG 73
           VE DLICWSAMISG
Sbjct: 317 VEKDLICWSAMISG 330

[Close]

BLAST of CsGy3G013215 vs. ExPASy TrEMBL
Match: A0A6J1IE29 (pentatricopeptide repeat-containing protein At4g14820-like OS=Cucurbita maxima OX=3661 GN=LOC111474723 PE=3 SV=1)

HSP 1 Score: 124 bits (312), Expect = 2.14e-31
Identity = 62/74 (83.78%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           MDP L+SALI MYAS G+ DLAWDLYEKISPK MV+ TAMVSGLAKGG+IGDAR VFDQM
Sbjct: 257 MDPHLQSALIKMYASYGSTDLAWDLYEKISPKNMVISTAMVSGLAKGGQIGDARYVFDQM 316

Query: 61  VE-DLICWSAMISG 73
           VE DLICWSAMISG
Sbjct: 317 VEKDLICWSAMISG 330

[Close]

BLAST of CsGy3G013215 vs. ExPASy TrEMBL
Match: A0A6J1ICZ7 (pentatricopeptide repeat-containing protein At4g14820-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111474723 PE=3 SV=1)

HSP 1 Score: 124 bits (312), Expect = 2.16e-31
Identity = 62/74 (83.78%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           MDP L+SALI MYAS G+ DLAWDLYEKISPK MV+ TAMVSGLAKGG+IGDAR VFDQM
Sbjct: 257 MDPHLQSALIKMYASYGSTDLAWDLYEKISPKNMVISTAMVSGLAKGGQIGDARYVFDQM 316

Query: 61  VE-DLICWSAMISG 73
           VE DLICWSAMISG
Sbjct: 317 VEKDLICWSAMISG 330

[Close]

BLAST of CsGy3G013215 vs. TAIR 10
Match: AT4G14820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 4.1e-15
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 1   MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM 60
           MD  L +AL+TMYA  G MD+A + + K+S + + V TAMVSG +K G++ DA+ +FDQ 
Sbjct: 245 MDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQT 304

Query: 61  -VEDLICWSAMIS 73
             +DL+CW+ MIS
Sbjct: 305 EKKDLVCWTTMIS 317

[Close]

BLAST of CsGy3G013215 vs. TAIR 10
Match: AT3G62890.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 6.7e-10
Identity = 28/73 (38.36%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 2   DPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMV 61
           DP +R++L+ MY+SCG +  A  +++    K +    ++V+  AK G I DAR +FD+M 
Sbjct: 96  DPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMP 155

Query: 62  E-DLICWSAMISG 74
           E ++I WS +I+G
Sbjct: 156 ERNVISWSCLING 168

[Close]

BLAST of CsGy3G013215 vs. TAIR 10
Match: AT3G15930.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-09
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 4   RLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM-VE 63
           RL +AL+  YA+CG MD+A  ++  +  + ++  T++V G  + G +  AR  FDQM V 
Sbjct: 272 RLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVR 331

Query: 64  DLICWSAMISG 74
           D I W+ MI G
Sbjct: 332 DRISWTIMIDG 342

[Close]

BLAST of CsGy3G013215 vs. TAIR 10
Match: AT5G15300.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-09
Identity = 26/70 (37.14%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 5   LRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM-VED 64
           +++ALI  +A+CG + +A +L++  +  + V  ++M SG AK GKI +A  +FD+M  +D
Sbjct: 149 VKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKD 208

Query: 65  LICWSAMISG 74
            + W+ MI+G
Sbjct: 209 QVAWNVMITG 218

[Close]

BLAST of CsGy3G013215 vs. TAIR 10
Match: AT2G35030.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 2.6e-09
Identity = 28/68 (41.18%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 7   SALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLI 66
           ++++      G +D A +L+E++  + +V  TAMV GLAK GK+ +AR +FD M E ++I
Sbjct: 175 NSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNII 234

Query: 67  CWSAMISG 74
            W+AMI+G
Sbjct: 235 SWNAMITG 242

The following BLAST results are available for this feature:

BLAST of CsGy3G013215 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23337	5.7e-14	49.32	Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX...	[more]
Q683I9	9.5e-09	38.36	Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana OX...	[more]
Q9LSB8	1.6e-08	39.44	Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis th...	[more]
Q9LXF2	1.6e-08	37.14	Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana OX...	[more]
O64766	3.6e-08	41.18	Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidop...	[more]

BLAST of CsGy3G013215 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031738996.1	1.74e-41	100.00	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g14820, part...	[more]
KAE8650357.1	2.25e-40	100.00	hypothetical protein Csa_009765 [Cucumis sativus]	[more]
KAG7028900.1	7.37e-33	85.14	Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyr...	[more]
XP_022138165.1	1.03e-32	86.49	pentatricopeptide repeat-containing protein At4g14820 [Momordica charantia]	[more]
KAG6597439.1	1.40e-32	85.14	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]

BLAST of CsGy3G013215 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5H9	1.28e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146580 PE=4 SV=1	[more]
A0A6J1C8N9	4.96e-33	86.49	pentatricopeptide repeat-containing protein At4g14820 OS=Momordica charantia OX=...	[more]
A0A6J1H7U5	6.79e-33	85.14	pentatricopeptide repeat-containing protein At4g14820 OS=Cucurbita moschata OX=3...	[more]
A0A6J1IE29	2.14e-31	83.78	pentatricopeptide repeat-containing protein At4g14820-like OS=Cucurbita maxima O...	[more]
A0A6J1ICZ7	2.16e-31	83.78	pentatricopeptide repeat-containing protein At4g14820-like isoform X2 OS=Cucurbi...	[more]

BLAST of CsGy3G013215 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14820.1	4.1e-15	49.32	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G62890.1	6.7e-10	38.36	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G15930.1	1.2e-09	39.44	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G15300.1	1.2e-09	37.14	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G35030.1	2.6e-09	41.18	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..73 e-value: 4.1E-13 score: 51.1
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 7..29 e-value: 0.13 score: 12.6 coord: 35..62 e-value: 5.0E-5 score: 23.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 36..62 e-value: 6.6E-6 score: 24.0
None	No IPR available	PANTHER	PTHR47928:SF112	TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN, DYW DOMAIN PROTEIN-RELATED	coord: 35..73 coord: 2..60
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 35..73 coord: 2..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G013215.1	CsGy3G013215.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding