CsGy3G013060 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G013060
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	protein RDM1
Location	Gy14Chr3: 9811875 .. 9816782 (-)
RNA-Seq Expression	CsGy3G013060
Synteny	CsGy3G013060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGTTGCTGCCTGCATTTGTATGAAAACTTCTTGTTTATTTGGTTGTTTGAGATGTTGATTGTAATTGTCTATCGTCGTTTTGATGGGGTTGCCTACCTAGAATGTTTCTTGGAGGGATGAACATCCATCGTAGTATTTATTTATTAGTTTCCTAAACTAGGGTTACCCTTCTCTTGACTGGGTTACCCTTCACTTGACTGCCAGCCGCTTCCCACTTCTCTTCTCAATTTCTCGATCTTTCGTCTCCTCCCACCATCTCCATTGGCCATAAAGCTTCCTCTCCCTCTCTCTCTGTCTCAGCTTCCTCTTTATCGGCCTCACTTCGTCTTCATCTCACGATTCTGAAGTACATTCTGTTTCATGGCAACTAAAAGCTGTTGGTGCACTTTTCCTTCTCAATAGTAATCTTTAGAGAATCCAACCATCGCTTAAGTGGTACACGACATACACTATTGACCTAGAGGTTAGAGGTTGAAGTCCTCCTTCCCAAATACAACCTTACTTGAACAGGATCTGTTCTATTTTAGTTTGGTTGGCATCTCATAATTCTAACTCTTTGCATGATCAATGGATTTTTAACCGTGTTGGTATTTTGTAAGCTGTTCTGTATTGATCGGTATGGTTACTAACAAAACCATGATCTCTTCTTGTCCAGAATCACATAATTTACAAAATGAAGAGGCCAATGCCCTGGAATGAACAAGTAGATATTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAGCAGCAATACAAAATGATGGATATGAGTTCAAGCCTTCCCTAGACGATTTCAAAATTCCAGCCAAAGAAATGACATCTGAAGGTATTTTGGCCTTGCATGAGTGAGATCAAGTTCAATTCGAAGGCTCTGATAATCAATGCTGATGTGTATATAATTTTCAAATTCATAAGCTTTGAAAATAGGATCTTCTTTGAAATGTCTTCTAACGATGCAGGTATGTTGATGAAAAGGGCGGAAATGTATCAAGAATACATGAAACAGATCCAAATCCCAGCACAACGTGGTTCTGTGATACCATTTACAACTTGGATGGGTTTAGGCAAATCTATAAAGCAACTTTATGGCCAACCTTTGCACTACTTGACTAACATTCTACTCAAACAATGGGATCAATTACGGTTAGGAAGTGCGGATGAATATAAGCCATTGGATACTGTAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCGATGCACCAAGCGTATGTTGACTCTATTTTCCCCCAACTATGAAGGCTGCTTTCAGTTATGTTCTGCTCTGTGTTGATACTATAGCATTTTCTAGAAGGCTAACATGTCAGTGACAATGTGAATTGTAATAGAAACAGCATAGTTCTTTTGTCACATTGCACTTCACTGTAAGGAGCTCCAGCATTGCTTCATCTGTCCATTGTTGCTATCTGTCTGTTCACTAGTTGACTGCATTTACTGTTGTAGCAAAGAACGAATGTAAATCAATATTGAAGATGCATATTTATCTTACACTTCTTTCCTATCTGAGAATTACATTAC

mRNA sequence

TGGGTTGCTGCCTGCATTTAATCACATAATTTACAAAATGAAGAGGCCAATGCCCTGGAATGAACAAGTAGATATTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAGCAGCAATACAAAATGATGGATATGAGTTCAAGCCTTCCCTAGACGATTTCAAAATTCCAGCCAAAGAAATGACATCTGAAGGTATGTTGATGAAAAGGGCGGAAATGTATCAAGAATACATGAAACAGATCCAAATCCCAGCACAACGTGGTTCTGTGATACCATTTACAACTTGGATGGGTTTAGGCAAATCTATAAAGCAACTTTATGGCCAACCTTTGCACTACTTGACTAACATTCTACTCAAACAATGGGATCAATTACGGTTAGGAAGTGCGGATGAATATAAGCCATTGGATACTGTAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCGATGCACCAAGCGTATGTTGACTCTATTTTCCCCCAACTATGAAGGCTGCTTTCAGTTATGTTCTGCTCTGTGTTGATACTATAGCATTTTCTAGAAGGCTAACATGTCAGTGACAATGTGAATTGTAATAGAAACAGCATAGTTCTTTTGTCACATTGCACTTCACTGTAAGGAGCTCCAGCATTGCTTCATCTGTCCATTGTTGCTATCTGTCTGTTCACTAGTTGACTGCATTTACTGTTGTAGCAAAGAACGAATGTAAATCAATATTGAAGATGCATATTTATCTTACACTTCTTTCCTATCTGAGAATTACATTAC

Coding sequence (CDS)

ATGAAGAGGCCAATGCCCTGGAATGAACAAGTAGATATTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAGCAGCAATACAAAATGATGGATATGAGTTCAAGCCTTCCCTAGACGATTTCAAAATTCCAGCCAAAGAAATGACATCTGAAGGTATGTTGATGAAAAGGGCGGAAATGTATCAAGAATACATGAAACAGATCCAAATCCCAGCACAACGTGGTTCTGTGATACCATTTACAACTTGGATGGGTTTAGGCAAATCTATAAAGCAACTTTATGGCCAACCTTTGCACTACTTGACTAACATTCTACTCAAACAATGGGATCAATTACGGTTAGGAAGTGCGGATGAATATAAGCCATTGGATACTGTAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCGATGCACCAAGCGTATGTTGACTCTATTTTCCCCCAACTATGA

Protein sequence

MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL*

Homology

[Close]

BLAST of CsGy3G013060 vs. ExPASy Swiss-Prot
Match: Q9LUJ3 (Protein RDM1 OS=Arabidopsis thaliana OX=3702 GN=RDM1 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.9e-48
Identity = 90/163 (55.21%), Postives = 123/163 (75.46%), Query Frame = 0


Query: 11  VDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQ 70
           +++  SG+S SSD +A I +DG+             +++  EG L++RAEMYQ+YMKQ+ 
Sbjct: 7   MELRPSGDSGSSDVDAEI-SDGF------SPLDTSHRDVADEGSLLRRAEMYQDYMKQVP 66

Query: 71  IPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADEYKPLDTVIHP 130
           IP  RGS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ R G+  E + LD++IHP
Sbjct: 67  IPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHP 126

Query: 131 SKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQ 174
           +KAEAT+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Sbjct: 127 TKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

[Close]

BLAST of CsGy3G013060 vs. NCBI nr
Match: XP_004134127.1 (protein RDM1 [Cucumis sativus] >XP_004134128.1 protein RDM1 [Cucumis sativus] >XP_031739108.1 protein RDM1 [Cucumis sativus] >KGN56957.1 hypothetical protein Csa_010629 [Cucumis sativus])

HSP 1 Score: 354 bits (909), Expect = 2.59e-123
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60
           MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174

[Close]

BLAST of CsGy3G013060 vs. NCBI nr
Match: XP_008438640.1 (PREDICTED: protein RDM1 [Cucumis melo] >XP_008438641.1 PREDICTED: protein RDM1 [Cucumis melo] >XP_008438642.1 PREDICTED: protein RDM1 [Cucumis melo] >XP_008438643.1 PREDICTED: protein RDM1 [Cucumis melo])

HSP 1 Score: 352 bits (904), Expect = 1.50e-122
Identity = 171/174 (98.28%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSEAA+QNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of CsGy3G013060 vs. NCBI nr
Match: KAA0049342.1 (protein RDM1 [Cucumis melo var. makuwa] >TYK17215.1 protein RDM1 [Cucumis melo var. makuwa])

HSP 1 Score: 352 bits (902), Expect = 3.03e-122
Identity = 170/174 (97.70%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSEAA+QNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHY+TNILLKQWDQLRLGSADE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYMTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of CsGy3G013060 vs. NCBI nr
Match: XP_038877941.1 (protein RDM1 [Benincasa hispida])

HSP 1 Score: 343 bits (880), Expect = 6.87e-119
Identity = 165/174 (94.83%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKPSLDDFKIPAKEMTSEGML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSLDDFKIPAKEMTSEGMLIKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of CsGy3G013060 vs. NCBI nr
Match: XP_022979547.1 (protein RDM1-like [Cucurbita maxima] >XP_022979548.1 protein RDM1-like [Cucurbita maxima] >XP_022979549.1 protein RDM1-like [Cucurbita maxima])

HSP 1 Score: 342 bits (877), Expect = 1.97e-118
Identity = 164/174 (94.25%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKPSLDDFKIPAKEMT+EGML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSLDDFKIPAKEMTAEGMLIKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of CsGy3G013060 vs. ExPASy TrEMBL
Match: A0A0A0L8M0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146430 PE=4 SV=1)

HSP 1 Score: 354 bits (909), Expect = 1.26e-123
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60
           MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174

[Close]

BLAST of CsGy3G013060 vs. ExPASy TrEMBL
Match: A0A1S3AWI8 (protein RDM1 OS=Cucumis melo OX=3656 GN=LOC103483688 PE=4 SV=1)

HSP 1 Score: 352 bits (904), Expect = 7.27e-123
Identity = 171/174 (98.28%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSEAA+QNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of CsGy3G013060 vs. ExPASy TrEMBL
Match: A0A5D3D0B3 (Protein RDM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00640 PE=4 SV=1)

HSP 1 Score: 352 bits (902), Expect = 1.47e-122
Identity = 170/174 (97.70%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSEAA+QNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHY+TNILLKQWDQLRLGSADE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYMTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of CsGy3G013060 vs. ExPASy TrEMBL
Match: A0A6J1INZ9 (protein RDM1-like OS=Cucurbita maxima OX=3661 GN=LOC111479225 PE=4 SV=1)

HSP 1 Score: 342 bits (877), Expect = 9.53e-119
Identity = 164/174 (94.25%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKPSLDDFKIPAKEMT+EGML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSLDDFKIPAKEMTAEGMLIKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of CsGy3G013060 vs. ExPASy TrEMBL
Match: A0A6J1GV10 (protein RDM1 OS=Cucurbita moschata OX=3662 GN=LOC111457683 PE=4 SV=1)

HSP 1 Score: 341 bits (875), Expect = 1.92e-118
Identity = 163/174 (93.68%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKPS+DDFKIPAKEMT+EGML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSMDDFKIPAKEMTAEGMLIKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]

BLAST of CsGy3G013060 vs. TAIR 10
Match: AT3G22680.1 (RNA-DIRECTED DNA METHYLATION 1 )

HSP 1 Score: 192.2 bits (487), Expect = 3.5e-49
Identity = 90/163 (55.21%), Postives = 123/163 (75.46%), Query Frame = 0


Query: 11  VDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQ 70
           +++  SG+S SSD +A I +DG+             +++  EG L++RAEMYQ+YMKQ+ 
Sbjct: 7   MELRPSGDSGSSDVDAEI-SDGF------SPLDTSHRDVADEGSLLRRAEMYQDYMKQVP 66

Query: 71  IPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADEYKPLDTVIHP 130
           IP  RGS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ R G+  E + LD++IHP
Sbjct: 67  IPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHP 126

Query: 131 SKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQ 174
           +KAEAT+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Sbjct: 127 TKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

The following BLAST results are available for this feature:

BLAST of CsGy3G013060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUJ3	4.9e-48	55.21	Protein RDM1 OS=Arabidopsis thaliana OX=3702 GN=RDM1 PE=1 SV=1	[more]

BLAST of CsGy3G013060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134127.1	2.59e-123	100.00	protein RDM1 [Cucumis sativus] >XP_004134128.1 protein RDM1 [Cucumis sativus] >X...	[more]
XP_008438640.1	1.50e-122	98.28	PREDICTED: protein RDM1 [Cucumis melo] >XP_008438641.1 PREDICTED: protein RDM1 [...	[more]
KAA0049342.1	3.03e-122	97.70	protein RDM1 [Cucumis melo var. makuwa] >TYK17215.1 protein RDM1 [Cucumis melo v...	[more]
XP_038877941.1	6.87e-119	94.83	protein RDM1 [Benincasa hispida]	[more]
XP_022979547.1	1.97e-118	94.25	protein RDM1-like [Cucurbita maxima] >XP_022979548.1 protein RDM1-like [Cucurbit...	[more]

BLAST of CsGy3G013060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8M0	1.26e-123	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146430 PE=4 SV=1	[more]
A0A1S3AWI8	7.27e-123	98.28	protein RDM1 OS=Cucumis melo OX=3656 GN=LOC103483688 PE=4 SV=1	[more]
A0A5D3D0B3	1.47e-122	97.70	Protein RDM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00640 P...	[more]
A0A6J1INZ9	9.53e-119	94.25	protein RDM1-like OS=Cucurbita maxima OX=3661 GN=LOC111479225 PE=4 SV=1	[more]
A0A6J1GV10	1.92e-118	93.68	protein RDM1 OS=Cucurbita moschata OX=3662 GN=LOC111457683 PE=4 SV=1	[more]

BLAST of CsGy3G013060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22680.1	3.5e-49	55.21	RNA-DIRECTED DNA METHYLATION 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036319	RDM1 superfamily	GENE3D	1.20.120.690	RDM1 protein domain	coord: 53..174 e-value: 6.9E-63 score: 211.9
IPR036319	RDM1 superfamily	SUPERFAMILY	109920	Hypothetical protein At3g22680	coord: 53..173
IPR015270	Protein RDM1, plant	PFAM	PF09187	RdDM_RDM1	coord: 55..173 e-value: 1.5E-66 score: 221.8
IPR015270	Protein RDM1, plant	PANTHER	PTHR36366	PROTEIN RDM1	coord: 1..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR36366:SF1	PROTEIN RDM1	coord: 1..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G013060.2	CsGy3G013060.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044030	regulation of DNA methylation
cellular_component	GO:0000419	RNA polymerase V complex
cellular_component	GO:0005634	nucleus