Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTCTGTTCTTCCCTCCCCGTTCTTTCTTTCAATCCAATCCCCAAAATCATCTTCAAATCTTCTGAAATTATTAGTGCTACACCGTTTTCGATTCGAAAGATTTCGGGAACCAACGGAATCTCCTCCTCCAAGTTGCTTGGAAAATTGACGAGGAGAAGCCTCTCTCTGCGGCTCAATGCGGCAGGATTGTCCGAGATTGAACCCGACTTAAACGAAGACCCTGTAGATCGTTGGGAAACTAACAGCGTCAGCCCTGTATGAACCGCTCTCTTTGTGCTCTCTCTCTCTGCTTCATTAACTCTCTGATTTTGTTGTGTTTTAGGTTTTCAAGTTATGAGTTGTGATGTGTTTATTTGGATTCACTGATTTAAATTAAGATTAAATTCAATTTCAGTTGATTTAGGGACGGAGATGTTGATAATTTTTTGTTTCGTTTCATAGGAAGATTTTGAGTATGGAGTATACGATGGACATCACACTTACTTTGAAGGGGAGAAGAAAGGTTAGTTCTGTAGCATATGCAACTGGGTTTATTTTCATTCCTTGCTTGGGAGAATATTTTAAATTTGGATGCTATAATCTACCAGAACTTGTTTCTGTTTTGGATTAAGTCTTCTGTTTAGACTGAGTGGAATGTGGATTTAATCCTTGGAATTATTGGAGCCCTTAGTTCTCTGATTTAGACATTCCAAGCATGGAATTTTGCTTTCCCATAAGCCCTTAAGATCTAATTTCGTGAGTTTTTTAGTATAGACTTCACATTTCTCAATGCCATGTGCCATCACAGTTGAGCCAAGGTGAAACTGATTACAATCTATCTCACTCAGACTGTGTACCAAATGACTCTTTTAGCATAGTGAGAAAAGGGTTTTAACTAATTAAAAACACTATGGAACTTCTCAGGATGTTTTGTTAGATACTAGAAGTAATTTTGAAAATGTTAAAGATCACCTACAACCGAACCAAAAGTACTTCATTTGCACTTCCTTTAGAAGTTATCCCAAACTAACTCTTAGTCAAATTGAGAAGTTGATGGTAACTTTGGTATCAATTTTTGCATCTCTTTAAGCAGTACCAACGACTAGAAGTACGGACCAACTTGTGCTGGTAGTAGGGATATTTATCTCCTTGCTAATTCATTTGGCTAGTAAATTCTGGTACTGATTACTTTTCACTGGCTACTTCTTTATAGGAACATTCTGGGGAGCCATTGCAGATGATATTGCTGCAGTTGGACCCCCAACAGGCTTTCAGAGTAAACTATTGTCGCTCTTTCATAACTCAATCCTCTAATTTCACCACTCATTTTATTATTAGCACATTTTACATTCTTGGCAGGCCTCATCTCTTGGCTCTTCCTACCGGCAGTTGCTGCTGGAATGTACTTCAATGTTCCGGTACTTTCAAGCATATTTTAGAGTAACTTTTGAAACGGTTAAAATGGCTTTTGTTTTGTTCAAGATTTCTCTTAATCAATGTCTACTCTATGAAAGTAGCATTTAAGTGAGATATATCTTAAAATGTCATTTATCTTTTCTTCTTGGCCATTGTCGAGGACACTTGGTTGGTTCTTATTGGACTTTATTTCAGGGGGAGTATCTATACATTGGAGCAGCTATATTTACAATAGTATTCTGCATAATTGAAATTGACAAGCCAGACCAGCCACACAACTTCGAACCTCAGATATATAACATGGAGAGAGGGGCTCGTGACAAGTTGATATCAGACTACAACACCATGGACATCTGGGAATTCAATGAGAAGTATGGAGACTTGTGGGATTTCACTGTCAAGAACGATGATATAACAAAGACATGA
mRNA sequence
ATGGCTCTCTGTTCTTCCCTCCCCGTTCTTTCTTTCAATCCAATCCCCAAAATCATCTTCAAATCTTCTGAAATTATTAGTGCTACACCGTTTTCGATTCGAAAGATTTCGGGAACCAACGGAATCTCCTCCTCCAAGTTGCTTGGAAAATTGACGAGGAGAAGCCTCTCTCTGCGGCTCAATGCGGCAGGATTGTCCGAGATTGAACCCGACTTAAACGAAGACCCTGTAGATCGTTGGGAAACTAACAGCGTCAGCCCTGAAGATTTTGAGTATGGAGTATACGATGGACATCACACTTACTTTGAAGGGGAGAAGAAAGGAACATTCTGGGGAGCCATTGCAGATGATATTGCTGCAGTTGGACCCCCAACAGGCTTTCAGAGCCTCATCTCTTGGCTCTTCCTACCGGCAGTTGCTGCTGGAATGTACTTCAATGTTCCGGGGGAGTATCTATACATTGGAGCAGCTATATTTACAATAGTATTCTGCATAATTGAAATTGACAAGCCAGACCAGCCACACAACTTCGAACCTCAGATATATAACATGGAGAGAGGGGCTCGTGACAAGTTGATATCAGACTACAACACCATGGACATCTGGGAATTCAATGAGAAGTATGGAGACTTGTGGGATTTCACTGTCAAGAACGATGATATAACAAAGACATGA
Coding sequence (CDS)
ATGGCTCTCTGTTCTTCCCTCCCCGTTCTTTCTTTCAATCCAATCCCCAAAATCATCTTCAAATCTTCTGAAATTATTAGTGCTACACCGTTTTCGATTCGAAAGATTTCGGGAACCAACGGAATCTCCTCCTCCAAGTTGCTTGGAAAATTGACGAGGAGAAGCCTCTCTCTGCGGCTCAATGCGGCAGGATTGTCCGAGATTGAACCCGACTTAAACGAAGACCCTGTAGATCGTTGGGAAACTAACAGCGTCAGCCCTGAAGATTTTGAGTATGGAGTATACGATGGACATCACACTTACTTTGAAGGGGAGAAGAAAGGAACATTCTGGGGAGCCATTGCAGATGATATTGCTGCAGTTGGACCCCCAACAGGCTTTCAGAGCCTCATCTCTTGGCTCTTCCTACCGGCAGTTGCTGCTGGAATGTACTTCAATGTTCCGGGGGAGTATCTATACATTGGAGCAGCTATATTTACAATAGTATTCTGCATAATTGAAATTGACAAGCCAGACCAGCCACACAACTTCGAACCTCAGATATATAACATGGAGAGAGGGGCTCGTGACAAGTTGATATCAGACTACAACACCATGGACATCTGGGAATTCAATGAGAAGTATGGAGACTTGTGGGATTTCACTGTCAAGAACGATGATATAACAAAGACATGA
Protein sequence
MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT*
Homology
BLAST of CsGy3G012750 vs. ExPASy Swiss-Prot
Match:
Q9FG89 (Photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB5 PE=2 SV=1)
HSP 1 Score: 272.7 bits (696), Expect = 3.7e-72
Identity = 126/175 (72.00%), Postives = 152/175 (86.86%), Query Frame = 0
Query: 49 GKLTRR-SLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGE-K 108
GK RR L+ ++AAGLS+IEPD+NEDP+ ++ETNS+ EDF+YG YDG HTY+EGE +
Sbjct: 35 GKSGRRLKLAKLVSAAGLSQIEPDINEDPIGQFETNSIEMEDFKYGYYDGAHTYYEGEVQ 94
Query: 109 KGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCII 168
KGTFWGAIADDIAAV GFQ LIS +FLPA+A GMYF+ PGEYL+IGAA+FT+VFCII
Sbjct: 95 KGTFWGAIADDIAAVDQTNGFQGLISCMFLPAIALGMYFDAPGEYLFIGAALFTVVFCII 154
Query: 169 EIDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDI 222
E+DKPDQPHNFEPQIY +ERGARDKLI+DYNTM IW+FN+KYGD+WDFT++ DDI
Sbjct: 155 EMDKPDQPHNFEPQIYKLERGARDKLINDYNTMSIWDFNDKYGDVWDFTIEKDDI 209
BLAST of CsGy3G012750 vs. NCBI nr
Match:
XP_004134105.1 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucumis sativus] >KGN56922.1 hypothetical protein Csa_009676 [Cucumis sativus])
HSP 1 Score: 457 bits (1177), Expect = 1.62e-162
Identity = 223/224 (99.55%), Postives = 223/224 (99.55%), Query Frame = 0
Query: 1 MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRL 60
MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRL
Sbjct: 1 MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRL 60
Query: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
Query: 121 VGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
VGPPTGFQ LISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 224
IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 224
BLAST of CsGy3G012750 vs. NCBI nr
Match:
KAA0049312.1 (photosynthetic NDH subunit of subcomplex B 5 [Cucumis melo var. makuwa] >TYK17246.1 photosynthetic NDH subunit of subcomplex B 5 [Cucumis melo var. makuwa])
HSP 1 Score: 431 bits (1109), Expect = 3.65e-152
Identity = 212/224 (94.64%), Postives = 216/224 (96.43%), Query Frame = 0
Query: 1 MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRL 60
MA SSLPVLSFNPIPKIIF SSEI++A PFSI+ I G+NGISSSKLLGKLTRRSLS RL
Sbjct: 1 MASSSSLPVLSFNPIPKIIFGSSEIVAA-PFSIQTIQGSNGISSSKLLGKLTRRSLSRRL 60
Query: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
Query: 121 VGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
VGPPTGFQ LISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 224
IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 223
BLAST of CsGy3G012750 vs. NCBI nr
Match:
XP_008438595.1 (PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 [Cucumis melo])
HSP 1 Score: 431 bits (1108), Expect = 5.18e-152
Identity = 212/224 (94.64%), Postives = 216/224 (96.43%), Query Frame = 0
Query: 1 MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRL 60
MA SSLPVLSFNPIPKIIF SSEI++A PFSI+ I G+NGISSSKLLGKLTRRSLS RL
Sbjct: 1 MASSSSLPVLSFNPIPKIIFGSSEIVAA-PFSIQTIRGSNGISSSKLLGKLTRRSLSRRL 60
Query: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
Query: 121 VGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
VGPPTGFQ LISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 224
IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 223
BLAST of CsGy3G012750 vs. NCBI nr
Match:
XP_038878594.1 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Benincasa hispida])
HSP 1 Score: 415 bits (1067), Expect = 9.23e-146
Identity = 205/223 (91.93%), Postives = 212/223 (95.07%), Query Frame = 0
Query: 1 MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRL 60
MA CSSLPVLSFNPIPKIIFKSSEI SAT FS + I +NGIS+SKLLG LTRRSLS RL
Sbjct: 1 MAPCSSLPVLSFNPIPKIIFKSSEI-SATAFSNQTIPVSNGISASKLLGILTRRSLSRRL 60
Query: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
NAAGLSEIE DLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61 NAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
Query: 121 VGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
VGPPTGFQ +ISWLFLPAVAAGMYFN+PGEYLYIGAAIFTIVFCIIE+DKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGVISWLFLPAVAAGMYFNIPGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQ 180
Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 223
IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKN+DITK
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNNDITK 222
BLAST of CsGy3G012750 vs. NCBI nr
Match:
KAG7028861.1 (Photosynthetic NDH subunit of subcomplex B 5, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 410 bits (1053), Expect = 1.26e-143
Identity = 200/223 (89.69%), Postives = 206/223 (92.38%), Query Frame = 0
Query: 1 MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRL 60
MALCSSLPVLSFNP+PKIIFKSSEI SAT FS R I G NGIS++KLLGK R S RL
Sbjct: 1 MALCSSLPVLSFNPLPKIIFKSSEI-SATAFSNRSIPGINGISAAKLLGKSARGSRLRRL 60
Query: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
NAAGLSEIEPDLNEDPVDRWETNSVS EDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61 NAAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
Query: 121 VGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
VGPPTGFQ ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIE+DKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQ 180
Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 223
IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 222
BLAST of CsGy3G012750 vs. ExPASy TrEMBL
Match:
A0A0A0L8H7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144120 PE=4 SV=1)
HSP 1 Score: 457 bits (1177), Expect = 7.84e-163
Identity = 223/224 (99.55%), Postives = 223/224 (99.55%), Query Frame = 0
Query: 1 MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRL 60
MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRL
Sbjct: 1 MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRL 60
Query: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
Query: 121 VGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
VGPPTGFQ LISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 224
IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 224
BLAST of CsGy3G012750 vs. ExPASy TrEMBL
Match:
A0A5A7U0K2 (Photosynthetic NDH subunit of subcomplex B 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00970 PE=4 SV=1)
HSP 1 Score: 431 bits (1109), Expect = 1.77e-152
Identity = 212/224 (94.64%), Postives = 216/224 (96.43%), Query Frame = 0
Query: 1 MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRL 60
MA SSLPVLSFNPIPKIIF SSEI++A PFSI+ I G+NGISSSKLLGKLTRRSLS RL
Sbjct: 1 MASSSSLPVLSFNPIPKIIFGSSEIVAA-PFSIQTIQGSNGISSSKLLGKLTRRSLSRRL 60
Query: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
Query: 121 VGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
VGPPTGFQ LISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 224
IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 223
BLAST of CsGy3G012750 vs. ExPASy TrEMBL
Match:
A0A1S3AXF4 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483655 PE=4 SV=1)
HSP 1 Score: 431 bits (1108), Expect = 2.51e-152
Identity = 212/224 (94.64%), Postives = 216/224 (96.43%), Query Frame = 0
Query: 1 MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRL 60
MA SSLPVLSFNPIPKIIF SSEI++A PFSI+ I G+NGISSSKLLGKLTRRSLS RL
Sbjct: 1 MASSSSLPVLSFNPIPKIIFGSSEIVAA-PFSIQTIRGSNGISSSKLLGKLTRRSLSRRL 60
Query: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
Query: 121 VGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
VGPPTGFQ LISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 224
IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT 223
BLAST of CsGy3G012750 vs. ExPASy TrEMBL
Match:
A0A6J1IBC3 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473099 PE=4 SV=1)
HSP 1 Score: 407 bits (1046), Expect = 7.10e-143
Identity = 199/223 (89.24%), Postives = 205/223 (91.93%), Query Frame = 0
Query: 1 MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRL 60
MALCSSLPVLSFNP+PKIIFKSS I SAT FS R I G NGIS++KLLGK R S RL
Sbjct: 1 MALCSSLPVLSFNPLPKIIFKSSGI-SATAFSNRSIPGINGISAAKLLGKSARGSRLRRL 60
Query: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
NAAGLSEIEPDLNEDPVDRWETNSVS EDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61 NAAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
Query: 121 VGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
VGPPTGFQ ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIE+DKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQ 180
Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 223
IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 222
BLAST of CsGy3G012750 vs. ExPASy TrEMBL
Match:
A0A6J1GAI7 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452262 PE=4 SV=1)
HSP 1 Score: 405 bits (1041), Expect = 4.10e-142
Identity = 198/223 (88.79%), Postives = 204/223 (91.48%), Query Frame = 0
Query: 1 MALCSSLPVLSFNPIPKIIFKSSEIISATPFSIRKISGTNGISSSKLLGKLTRRSLSLRL 60
MALCSSLPVLSFNP+PKIIFKSS I AT FS R I G NGIS++KLLGK R S RL
Sbjct: 1 MALCSSLPVLSFNPLPKIIFKSSGI-RATAFSNRSIPGINGISAAKLLGKSARGSRLRRL 60
Query: 61 NAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
NAAGLSEIEPDLNEDPVDRWETNSVS EDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA
Sbjct: 61 NAAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAA 120
Query: 121 VGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQ 180
VGPPTGFQ ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIE+DKPDQPHNFEPQ
Sbjct: 121 VGPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQ 180
Query: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 223
IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK
Sbjct: 181 IYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 222
BLAST of CsGy3G012750 vs. TAIR 10
Match:
AT5G43750.1 (NAD(P)H dehydrogenase 18 )
HSP 1 Score: 272.7 bits (696), Expect = 2.6e-73
Identity = 126/175 (72.00%), Postives = 152/175 (86.86%), Query Frame = 0
Query: 49 GKLTRR-SLSLRLNAAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGE-K 108
GK RR L+ ++AAGLS+IEPD+NEDP+ ++ETNS+ EDF+YG YDG HTY+EGE +
Sbjct: 35 GKSGRRLKLAKLVSAAGLSQIEPDINEDPIGQFETNSIEMEDFKYGYYDGAHTYYEGEVQ 94
Query: 109 KGTFWGAIADDIAAVGPPTGFQSLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCII 168
KGTFWGAIADDIAAV GFQ LIS +FLPA+A GMYF+ PGEYL+IGAA+FT+VFCII
Sbjct: 95 KGTFWGAIADDIAAVDQTNGFQGLISCMFLPAIALGMYFDAPGEYLFIGAALFTVVFCII 154
Query: 169 EIDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDI 222
E+DKPDQPHNFEPQIY +ERGARDKLI+DYNTM IW+FN+KYGD+WDFT++ DDI
Sbjct: 155 EMDKPDQPHNFEPQIYKLERGARDKLINDYNTMSIWDFNDKYGDVWDFTIEKDDI 209
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Q9FG89 | 3.7e-72 | 72.00 | Photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Arabidopsis thali... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_004134105.1 | 1.62e-162 | 99.55 | photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucumis sativus] >K... | [more] |
| KAA0049312.1 | 3.65e-152 | 94.64 | photosynthetic NDH subunit of subcomplex B 5 [Cucumis melo var. makuwa] >TYK1724... | [more] |
| XP_008438595.1 | 5.18e-152 | 94.64 | PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X... | [more] |
| XP_038878594.1 | 9.23e-146 | 91.93 | photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Benincasa hispida] | [more] |
| KAG7028861.1 | 1.26e-143 | 89.69 | Photosynthetic NDH subunit of subcomplex B 5, chloroplastic, partial [Cucurbita ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L8H7 | 7.84e-163 | 99.55 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144120 PE=4 SV=1 | [more] |
| A0A5A7U0K2 | 1.77e-152 | 94.64 | Photosynthetic NDH subunit of subcomplex B 5 OS=Cucumis melo var. makuwa OX=1194... | [more] |
| A0A1S3AXF4 | 2.51e-152 | 94.64 | photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 OS=Cucumi... | [more] |
| A0A6J1IBC3 | 7.10e-143 | 89.24 | photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 OS=Cucurb... | [more] |
| A0A6J1GAI7 | 4.10e-142 | 88.79 | photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Cucurbita moschat... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G43750.1 | 2.6e-73 | 72.00 | NAD(P)H dehydrogenase 18 | [more] |
