CsGy3G012010 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G012010
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4
Location	Gy14Chr3: 9151725 .. 9152258 (-)
RNA-Seq Expression	CsGy3G012010
Synteny	CsGy3G012010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCACTTCAAAACGACACTGTTATCGAACCCACACCATCCTCCTCTTCCACAACTCTCAGCCGCTACGAGAACCAAAAGCGCCGCGACTGGACCTCCTTCGGCCATTACATAACCAACCGCACCCCACCCTTAGCCTTGGCTCGCTGCACCGGCGCCCACGTCGTCGACTTCCTCCGCTACCTCGACCAATTTGGAAAGACCAAGATCCATTCCAATCTCTGCCCTTTCTTCGGCCACCCAAGCCCTTCTGGTGCATGCACCTGCCCGTTGCGCCAAGCCTGGGGCAGCCTTGACGCACTTGTGGGCCGCCTTCGGGCTGCTTACGAGGAGCACGGTGGGAATGCTGAGACCAACCCTTTTGGGGCTCGGCCTGTGCGTGTTTATTTGCGTGAGGTTCGAGATTTGCAAGCTAAGGCTAGAGGGATTAGTTACCAAAAGAAGAAGCGAAAGCGGCCGTTGGGTCCGCCGCCGTCACGCTCGGGTGCTAGCAGTTGTAGTGAAACTACAATGAGTCAGTTGAAGTTATAA

mRNA sequence

ATGGATTCACTTCAAAACGACACTGTTATCGAACCCACACCATCCTCCTCTTCCACAACTCTCAGCCGCTACGAGAACCAAAAGCGCCGCGACTGGACCTCCTTCGGCCATTACATAACCAACCGCACCCCACCCTTAGCCTTGGCTCGCTGCACCGGCGCCCACGTCGTCGACTTCCTCCGCTACCTCGACCAATTTGGAAAGACCAAGATCCATTCCAATCTCTGCCCTTTCTTCGGCCACCCAAGCCCTTCTGGTGCATGCACCTGCCCGTTGCGCCAAGCCTGGGGCAGCCTTGACGCACTTGTGGGCCGCCTTCGGGCTGCTTACGAGGAGCACGGTGGGAATGCTGAGACCAACCCTTTTGGGGCTCGGCCTGTGCGTGTTTATTTGCGTGAGGTTCGAGATTTGCAAGCTAAGGCTAGAGGGATTAGTTACCAAAAGAAGAAGCGAAAGCGGCCGTTGGGTCCGCCGCCGTCACGCTCGGGTGCTAGCAGTTGTAGTGAAACTACAATGAGTCAGTTGAAGTTATAA

Coding sequence (CDS)

ATGGATTCACTTCAAAACGACACTGTTATCGAACCCACACCATCCTCCTCTTCCACAACTCTCAGCCGCTACGAGAACCAAAAGCGCCGCGACTGGACCTCCTTCGGCCATTACATAACCAACCGCACCCCACCCTTAGCCTTGGCTCGCTGCACCGGCGCCCACGTCGTCGACTTCCTCCGCTACCTCGACCAATTTGGAAAGACCAAGATCCATTCCAATCTCTGCCCTTTCTTCGGCCACCCAAGCCCTTCTGGTGCATGCACCTGCCCGTTGCGCCAAGCCTGGGGCAGCCTTGACGCACTTGTGGGCCGCCTTCGGGCTGCTTACGAGGAGCACGGTGGGAATGCTGAGACCAACCCTTTTGGGGCTCGGCCTGTGCGTGTTTATTTGCGTGAGGTTCGAGATTTGCAAGCTAAGGCTAGAGGGATTAGTTACCAAAAGAAGAAGCGAAAGCGGCCGTTGGGTCCGCCGCCGTCACGCTCGGGTGCTAGCAGTTGTAGTGAAACTACAATGAGTCAGTTGAAGTTATAA

Protein sequence

MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL*

Homology

[Close]

BLAST of CsGy3G012010 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 5.5e-63
Identity = 111/152 (73.03%), Postives = 131/152 (86.18%), Query Frame = 0


Query: 16  SSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSNL 75
           S +  LSRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H++L
Sbjct: 41  SGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHL 100

Query: 76  CPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREVR 135
           CPFFGHP+P   C CPLRQAWGSLDAL+GRLRAA+EE+GG+ ETNPFGAR VR+YLREVR
Sbjct: 101 CPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVR 160

Query: 136 DLQAKARGISYQKKKRKRPLGP-PPSRSGASS 167
           D QAKARGISY+KKKRKRP  P PP++   SS
Sbjct: 161 DSQAKARGISYEKKKRKRPPPPLPPAQPAISS 192

[Close]

BLAST of CsGy3G012010 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.6e-62
Identity = 110/163 (67.48%), Postives = 135/163 (82.82%), Query Frame = 0


Query: 15  SSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSN 74
           SS S   SRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H+N
Sbjct: 46  SSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTN 105

Query: 75  LCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREV 134
           +C F+GHP+P   C CPLRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR VR+YLREV
Sbjct: 106 ICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREV 165

Query: 135 RDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL 178
           RD+Q+KARG+SY+KKKRKRPL   PS S +SS +  +  Q ++
Sbjct: 166 RDMQSKARGVSYEKKKRKRPL---PSSSTSSSSAVASHQQFQM 205

[Close]

BLAST of CsGy3G012010 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 8.0e-62
Identity = 110/174 (63.22%), Postives = 136/174 (78.16%), Query Frame = 0


Query: 12  PTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKI 71
           P+PSSSS +LSRYE+QKRRDW +FG Y+ N  PPL+L+RC+GAHV++FL+Y+DQFGKTK+
Sbjct: 69  PSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKV 128

Query: 72  HSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYL 131
           H+ +CPF+GHP+P   C CPLRQAWGSLDAL+GRLRAAYEE+GG  E NPFGAR VR+YL
Sbjct: 129 HTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYL 188

Query: 132 REVRDLQAKARGISYQKKKRKRPL------------GPPPSRSGASSCSETTMS 174
           REVR+ QA+ARGISY+KKKRK+P              PPP    AS   +T+ S
Sbjct: 189 REVRETQARARGISYEKKKRKKPSSAGAGAGPSSEGSPPPPGGSASGGGDTSAS 242

[Close]

BLAST of CsGy3G012010 vs. ExPASy Swiss-Prot
Match: Q6K5X1 (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 8.0e-62
Identity = 110/174 (63.22%), Postives = 136/174 (78.16%), Query Frame = 0


Query: 12  PTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKI 71
           P+PSSSS +LSRYE+QKRRDW +FG Y+ N  PPL+L+RC+GAHV++FL+Y+DQFGKTK+
Sbjct: 69  PSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKV 128

Query: 72  HSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYL 131
           H+ +CPF+GHP+P   C CPLRQAWGSLDAL+GRLRAAYEE+GG  E NPFGAR VR+YL
Sbjct: 129 HTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYL 188

Query: 132 REVRDLQAKARGISYQKKKRKRPL------------GPPPSRSGASSCSETTMS 174
           REVR+ QA+ARGISY+KKKRK+P              PPP    AS   +T+ S
Sbjct: 189 REVRETQARARGISYEKKKRKKPSSAGAGAGPSSEGSPPPPGGSASGGGDTSAS 242

[Close]

BLAST of CsGy3G012010 vs. ExPASy Swiss-Prot
Match: Q7XDD0 (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.7e-59
Identity = 105/151 (69.54%), Postives = 127/151 (84.11%), Query Frame = 0


Query: 15  SSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSN 74
           S++  + SRYE+QKRRDW +FG Y+ N  PPL+LARC+GAHV++FLRYLDQFGKTK+H+ 
Sbjct: 32  SAAGASPSRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVHAP 91

Query: 75  LCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREV 134
            CPFFGHP+P   C CPLRQAWGSLDALVGRLRAAYEE+GG  E NPFGAR VR+YLREV
Sbjct: 92  ACPFFGHPAPPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREV 151

Query: 135 RDLQAKARGISYQKKKRKRPLGPPPSRSGAS 166
           R+ QA+ARG+SY+KKKRK+P  P PS + A+
Sbjct: 152 REHQARARGVSYEKKKRKKP--PHPSSAAAA 180

[Close]

BLAST of CsGy3G012010 vs. NCBI nr
Match: XP_004134409.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis sativus] >KGN56850.1 hypothetical protein Csa_010244 [Cucumis sativus])

HSP 1 Score: 365 bits (938), Expect = 1.23e-127
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL 177
           PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL 177

[Close]

BLAST of CsGy3G012010 vs. NCBI nr
Match: XP_008438509.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo])

HSP 1 Score: 348 bits (892), Expect = 1.37e-120
Identity = 170/179 (94.97%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITN TPPLALARCTGAHVV+FL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSG CTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLG--PPPSRSGASSCSETTMSQLKL 177
           PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLG  PPP RS ASSCSE+T+SQLKL
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGLPPPPPRSAASSCSESTISQLKL 179

[Close]

BLAST of CsGy3G012010 vs. NCBI nr
Match: KAA0049244.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo var. makuwa] >TYK17314.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo var. makuwa])

HSP 1 Score: 347 bits (891), Expect = 1.94e-120
Identity = 169/179 (94.41%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITN TPPLALARCTGAH+V+FL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHIVEFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSG CTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLG--PPPSRSGASSCSETTMSQLKL 177
           PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLG  PPP RS ASSCSE+T+SQLKL
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGLPPPPPRSAASSCSESTISQLKL 179

[Close]

BLAST of CsGy3G012010 vs. NCBI nr
Match: XP_038874756.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida])

HSP 1 Score: 293 bits (749), Expect = 9.56e-99
Identity = 152/184 (82.61%), Postives = 158/184 (85.87%), Query Frame = 0


Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60
           MDS QNDTV E  PS SSTTLSRYENQKRRDW +FGHYITN TPPLALA C GAHVV+FL
Sbjct: 1   MDS-QNDTV-EAAPSPSSTTLSRYENQKRRDWNTFGHYITNHTPPLALACCNGAHVVEFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSG C+CPLRQAWGSLDALVGRLRAAYEEHGGNAE N
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCSCPLRQAWGSLDALVGRLRAAYEEHGGNAEFN 120

Query: 121 PFGARPVRVYLREVRDLQAKARGISYQKKK-RKRPLGPPPSRS------GASSCSETTMS 177
           PFGARPVR+YLREVRDLQAKARGISYQKKK RK  L PPP R        ASS  E+T+S
Sbjct: 121 PFGARPVRLYLREVRDLQAKARGISYQKKKKRKLSLSPPPPRQHAAVFGAASSNGESTIS 180

[Close]

BLAST of CsGy3G012010 vs. NCBI nr
Match: XP_028780708.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Prosopis alba])

HSP 1 Score: 253 bits (645), Expect = 6.40e-83
Identity = 117/152 (76.97%), Postives = 132/152 (86.84%), Query Frame = 0


Query: 17  SSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSNLC 76
           SSTTLSRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H+ LC
Sbjct: 28  SSTTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHNQLC 87

Query: 77  PFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREVRD 136
           PFFGHP+P   C CPLRQAWGSLDALVGRLRAA+EE+GG  ETNPFGAR VR+YLREVRD
Sbjct: 88  PFFGHPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPETNPFGARAVRLYLREVRD 147

Query: 137 LQAKARGISYQKKKRKRPLGPPPSRSGASSCS 168
            QAKARGISYQKKKRKRP  PPP+   +SS S
Sbjct: 148 SQAKARGISYQKKKRKRPQEPPPALPPSSSAS 179

[Close]

BLAST of CsGy3G012010 vs. ExPASy TrEMBL
Match: A0A0A0L4D7 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G134980 PE=3 SV=1)

HSP 1 Score: 365 bits (938), Expect = 5.96e-128
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL 177
           PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL 177

[Close]

BLAST of CsGy3G012010 vs. ExPASy TrEMBL
Match: A0A1S3AX69 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Cucumis melo OX=3656 GN=LOC103483585 PE=3 SV=1)

HSP 1 Score: 348 bits (892), Expect = 6.63e-121
Identity = 170/179 (94.97%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITN TPPLALARCTGAHVV+FL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSG CTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLG--PPPSRSGASSCSETTMSQLKL 177
           PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLG  PPP RS ASSCSE+T+SQLKL
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGLPPPPPRSAASSCSESTISQLKL 179

[Close]

BLAST of CsGy3G012010 vs. ExPASy TrEMBL
Match: A0A5D3D237 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001690 PE=3 SV=1)

HSP 1 Score: 347 bits (891), Expect = 9.42e-121
Identity = 169/179 (94.41%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFL 60
           MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITN TPPLALARCTGAH+V+FL
Sbjct: 1   MDSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHIVEFL 60

Query: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120
           RYLDQFGKTKIHSNLCPFFGHPSPSG CTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN
Sbjct: 61  RYLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETN 120

Query: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLG--PPPSRSGASSCSETTMSQLKL 177
           PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLG  PPP RS ASSCSE+T+SQLKL
Sbjct: 121 PFGARPVRVYLREVRDLQAKARGISYQKKKRKRPLGLPPPPPRSAASSCSESTISQLKL 179

[Close]

BLAST of CsGy3G012010 vs. ExPASy TrEMBL
Match: A0A1S3V4T5 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106771862 PE=3 SV=1)

HSP 1 Score: 251 bits (641), Expect = 1.95e-82
Identity = 114/146 (78.08%), Postives = 130/146 (89.04%), Query Frame = 0


Query: 14  PSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHS 73
           PSSS TTLSRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H+
Sbjct: 41  PSSSPTTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHT 100

Query: 74  NLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLRE 133
           +LCPFFGHP+P   C CPLRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR VR+YLRE
Sbjct: 101 HLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLRE 160

Query: 134 VRDLQAKARGISYQKKKRKRPLGPPP 159
           VRD QAKARGISY+KKKRKRP  PPP
Sbjct: 161 VRDSQAKARGISYEKKKRKRPQHPPP 186

[Close]

BLAST of CsGy3G012010 vs. ExPASy TrEMBL
Match: A0A3Q0FBK8 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X3 OS=Vigna radiata var. radiata OX=3916 GN=LOC106771862 PE=3 SV=1)

HSP 1 Score: 251 bits (641), Expect = 1.95e-82
Identity = 114/146 (78.08%), Postives = 130/146 (89.04%), Query Frame = 0


Query: 14  PSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHS 73
           PSSS TTLSRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H+
Sbjct: 41  PSSSPTTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHT 100

Query: 74  NLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLRE 133
           +LCPFFGHP+P   C CPLRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR VR+YLRE
Sbjct: 101 HLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLRE 160

Query: 134 VRDLQAKARGISYQKKKRKRPLGPPP 159
           VRD QAKARGISY+KKKRKRP  PPP
Sbjct: 161 VRDSQAKARGISYEKKKRKRPQHPPP 186

[Close]

BLAST of CsGy3G012010 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 241.9 bits (616), Expect = 3.9e-64
Identity = 111/152 (73.03%), Postives = 131/152 (86.18%), Query Frame = 0


Query: 16  SSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSNL 75
           S +  LSRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H++L
Sbjct: 41  SGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHL 100

Query: 76  CPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREVR 135
           CPFFGHP+P   C CPLRQAWGSLDAL+GRLRAA+EE+GG+ ETNPFGAR VR+YLREVR
Sbjct: 101 CPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVR 160

Query: 136 DLQAKARGISYQKKKRKRPLGP-PPSRSGASS 167
           D QAKARGISY+KKKRKRP  P PP++   SS
Sbjct: 161 DSQAKARGISYEKKKRKRPPPPLPPAQPAISS 192

[Close]

BLAST of CsGy3G012010 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 240.4 bits (612), Expect = 1.1e-63
Identity = 110/163 (67.48%), Postives = 135/163 (82.82%), Query Frame = 0


Query: 15  SSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYLDQFGKTKIHSN 74
           SS S   SRYENQKRRDW +FG Y+ N  PPL+L+RC+GAHV++FLRYLDQFGKTK+H+N
Sbjct: 46  SSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTN 105

Query: 75  LCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFGARPVRVYLREV 134
           +C F+GHP+P   C CPLRQAWGSLDAL+GRLRAA+EE+GG  ETNPFGAR VR+YLREV
Sbjct: 106 ICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREV 165

Query: 135 RDLQAKARGISYQKKKRKRPLGPPPSRSGASSCSETTMSQLKL 178
           RD+Q+KARG+SY+KKKRKRPL   PS S +SS +  +  Q ++
Sbjct: 166 RDMQSKARGVSYEKKKRKRPL---PSSSTSSSSAVASHQQFQM 205

[Close]

BLAST of CsGy3G012010 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 216.1 bits (549), Expect = 2.3e-56
Identity = 103/158 (65.19%), Postives = 125/158 (79.11%), Query Frame = 0


Query: 2   DSLQNDTV--IEPTP---SSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHV 61
           DS ++D V   +P P   SS   T SRYE+QKRRDW +F  Y+ N  PPLAL+RC+GAHV
Sbjct: 5   DSGRSDPVKGDDPGPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHV 64

Query: 62  VDFLRYLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGN 121
           ++FL+YLDQFGKTK+H   CP+FGH  P   C+CPL+QAWGSLDAL+GRLRAAYEE+GG 
Sbjct: 65  IEFLKYLDQFGKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGR 124

Query: 122 AETNPFGARPVRVYLREVRDLQAKARGISYQKKKRKRP 155
            ++NPF AR VR+YLREVR+ QAKARGI Y+KKKRKRP
Sbjct: 125 PDSNPFAARAVRIYLREVRESQAKARGIPYEKKKRKRP 162

[Close]

BLAST of CsGy3G012010 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 211.8 bits (538), Expect = 4.4e-55
Identity = 98/149 (65.77%), Postives = 121/149 (81.21%), Query Frame = 0


Query: 6   NDTVIEPTPSSSST--TLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYL 65
           N ++   TPSS S+  + SRYENQKRRDW +F  Y+ N  PPL+LA C+GAHV+DFLRYL
Sbjct: 14  NTSLSTQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYL 73

Query: 66  DQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNPFG 125
           DQFGKTK+H   C FFG P+P   C CPLRQAWGSLDAL+GRLRAAYEE+GG  ET+PFG
Sbjct: 74  DQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFG 133

Query: 126 ARPVRVYLREVRDLQAKARGISYQKKKRK 153
           +R VR++LREVRD QAK+RG+SY+KK+++
Sbjct: 134 SRSVRIFLREVRDFQAKSRGVSYEKKRKR 162

[Close]

BLAST of CsGy3G012010 vs. TAIR 10
Match: AT5G58500.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 209.9 bits (533), Expect = 1.7e-54
Identity = 98/152 (64.47%), Postives = 121/152 (79.61%), Query Frame = 0


Query: 4   LQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLRYL 63
           ++ +T  +   SSSS+  SRYE+QKRRDW +F  Y+ N  PPL L+RC+GAHV++FL+YL
Sbjct: 1   MEGETAAKAAASSSSSP-SRYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYL 60

Query: 64  DQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGN-AETNPF 123
           DQFGKTK+H+  CPFFG P+P   CTCPL+QAWGSLDAL+GRLRAA+EE GG   E+NPF
Sbjct: 61  DQFGKTKVHATACPFFGQPNPPSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNPF 120

Query: 124 GARPVRVYLREVRDLQAKARGISYQKKKRKRP 155
            A+ VR+YL+EVR  QAKARGI Y KKKRKRP
Sbjct: 121 AAKAVRIYLKEVRQTQAKARGIPYDKKKRKRP 151

The following BLAST results are available for this feature:

BLAST of CsGy3G012010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW68	5.5e-63	73.03	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
O82268	1.6e-62	67.48	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XAV5	8.0e-62	63.22	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
Q6K5X1	8.0e-62	63.22	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]
Q7XDD0	3.7e-59	69.54	Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1	[more]

BLAST of CsGy3G012010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134409.1	1.23e-127	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis sativus] >KGN56850.1 hypothe...	[more]
XP_008438509.1	1.37e-120	94.97	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo]	[more]
KAA0049244.1	1.94e-120	94.41	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo var. makuwa] >TYK17314....	[more]
XP_038874756.1	9.56e-99	82.61	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida]	[more]
XP_028780708.1	6.40e-83	76.97	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Prosopis alba]	[more]

BLAST of CsGy3G012010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4D7	5.96e-128	100.00	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G134980 PE=3 S...	[more]
A0A1S3AX69	6.63e-121	94.97	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Cucumis melo OX=3656 GN=LOC1034835...	[more]
A0A5D3D237	9.42e-121	94.41	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3V4T5	1.95e-82	78.08	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X2 OS=Vigna radiata var. radi...	[more]
A0A3Q0FBK8	1.95e-82	78.08	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X3 OS=Vigna radiata var. radi...	[more]

BLAST of CsGy3G012010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23290.2	3.9e-64	73.03	Protein of unknown function (DUF640)	[more]
AT2G31160.1	1.1e-63	67.48	Protein of unknown function (DUF640)	[more]
AT1G07090.1	2.3e-56	65.19	Protein of unknown function (DUF640)	[more]
AT3G04510.1	4.4e-55	65.77	Protein of unknown function (DUF640)	[more]
AT5G58500.1	1.7e-54	64.47	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 16..136 e-value: 7.7E-60 score: 200.6
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 23..150 score: 70.315414
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..177
None	No IPR available	PANTHER	PTHR31165:SF41	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 4	coord: 13..155
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 13..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G012010.1	CsGy3G012010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0090698	post-embryonic plant morphogenesis
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus