CsGy3G011860 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G011860
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	50S ribosomal protein L28
Location	Gy14Chr3: 9057468 .. 9058455 (+)
RNA-Seq Expression	CsGy3G011860
Synteny	CsGy3G011860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCCATTTTACAAAGATAAACTCAATCGGTAACAATGGCAGCTTCTGTTGTCTTTGGCTTCACGCCGGCGGCCACTTGTTCCGGTGTAATGACAACCTCCTCAACCAAACTTCACTTCAGAACTAAACCCAATTCCGATCTAGGGTTCCTCACTTCTCAATTGAGCGGCATCAGAATCTCCTCCAACCACTCACTCATCTCCCCCGCTTCCATTTCTACTGCTCCTCTCAGGCCTTCCCTTCAACCTGTTGCTCGTAATATCTCCCTCTCTTGTCTCTCGTTTATTGTTTTGCTATATTTCATTTGTTTAACTTCAAGCTCTTTTTGGGCTCTATTTGAATTAATTGTATGGCTATGGCTGAAGCATTTTCTATTTCAATTAGGTTTCCTAATTCACCCATTATTTTCTGATTCCATTTTGGGCTATTTATAATTTCTGAATTGGGAACCTTCTCAAACCTTGTGGATTCATTATTTGTTGTTTCAGGTAGAATTTGTCCATTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAATTGCAGTTTGTGAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCTTCGTAAAGAATGATATGGTAATTCATGACACTCAATCTTAACTCATTTAGAATTTGAGGAAGATTTGTTTGTATTCCTGCTGTTTTTGCCTCTTCTTGTTGTTAGTCATCTGTTTATTTTTCATGGTCACAGTATTCTTGTATCTTTGCTTTCCTTCCTCCATTTGTCAATGAAGCTGAAAAATCCATCCTCTTTCCCTTCTGGGTTTTCTGAATGTTACATTTTCTTAGAAGTTCAGCTAAAATGATCTTACAATTTTCATAGAAAGCTATGAGAAGC

mRNA sequence

CTTCCCATTTTACAAAGATAAACTCAATCGGTAACAATGGCAGCTTCTGTTGTCTTTGGCTTCACGCCGGCGGCCACTTGTTCCGGTGTAATGACAACCTCCTCAACCAAACTTCACTTCAGAACTAAACCCAATTCCGATCTAGGGTTCCTCACTTCTCAATTGAGCGGCATCAGAATCTCCTCCAACCACTCACTCATCTCCCCCGCTTCCATTTCTACTGCTCCTCTCAGGCCTTCCCTTCAACCTGTTGCTCGTAGAATTTGTCCATTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAATTGCAGTTTGTGAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCTTCGTAAAGAATGATATGGTAATTCATGACACTCAATCTTAACTCATTTAGAATTTGAGGAAGATTTGTTTGTATTCCTGCTGTTTTTGCCTCTTCTTGTTGTTAGTCATCTGTTTATTTTTCATGGTCACAGTATTCTTGTATCTTTGCTTTCCTTCCTCCATTTGTCAATGAAGCTGAAAAATCCATCCTCTTTCCCTTCTGGGTTTTCTGAATGTTACATTTTCTTAGAAGTTCAGCTAAAATGATCTTACAATTTTCATAGAAAGCTATGAGAAGC

Coding sequence (CDS)

ATGGCAGCTTCTGTTGTCTTTGGCTTCACGCCGGCGGCCACTTGTTCCGGTGTAATGACAACCTCCTCAACCAAACTTCACTTCAGAACTAAACCCAATTCCGATCTAGGGTTCCTCACTTCTCAATTGAGCGGCATCAGAATCTCCTCCAACCACTCACTCATCTCCCCCGCTTCCATTTCTACTGCTCCTCTCAGGCCTTCCCTTCAACCTGTTGCTCGTAGAATTTGTCCATTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAATTGCAGTTTGTGAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCTTCGTAAAGAATGA

Protein sequence

MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE*

Homology

[Close]

BLAST of CsGy3G011860 vs. ExPASy Swiss-Prot
Match: P82245 (50S ribosomal protein L28, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL28 PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 5.8e-45
Identity = 101/145 (69.66%), Postives = 116/145 (80.00%), Query Frame = 0


Query: 16  SGVMTTSSTKLHFR-------TKPN---SDLGFLTSQLSGIRISSNHSLISPASISTAPL 75
           SG++ ++ + + FR        KP    S+LGFLTSQLSGI+IS +      +   +APL
Sbjct: 4   SGMLISNPSNVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPISAPL 63

Query: 76  RPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLST 135
           +PSLQPVARRICPFTGKK+NK N VS SNHKTK+LQFVNLQYK+VWWEAGKRFVKLRLST
Sbjct: 64  KPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLST 123

Query: 136 KALKTIEKNGLDAVAKKAGIDLRKE 151
           KALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 124 KALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of CsGy3G011860 vs. ExPASy Swiss-Prot
Match: P30956 (50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL28 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.7e-44
Identity = 91/122 (74.59%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 29  RTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKN 88
           ++K +S+L F+TSQLSG++ISS H + S A +S  P +PSLQPVARRICPFTGKK+N+ N
Sbjct: 31  QSKLSSELSFVTSQLSGLKISSTHFISSSAPLS-VPFKPSLQPVARRICPFTGKKSNRAN 90

Query: 89  LVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLR 148
            VS SNHKTKKLQFVNLQYK++WWEAGKR+VKLRLSTKA+KTIEKNGLDAVAKKAGIDL 
Sbjct: 91  KVSHSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKAIKTIEKNGLDAVAKKAGIDLS 150

Query: 149 KE 151
           K+
Sbjct: 151 KK 151

[Close]

BLAST of CsGy3G011860 vs. ExPASy Swiss-Prot
Match: O22795 (50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL28 PE=2 SV=2)

HSP 1 Score: 174.9 bits (442), Expect = 7.1e-43
Identity = 98/134 (73.13%), Postives = 111/134 (82.84%), Query Frame = 0


Query: 19  MTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHS-LISPASISTAPLRPSLQP-VARRI 78
           MT+S+  +   T  + +LGFLTSQLSG+RIS   S +I+  S+   P  P +QP VARRI
Sbjct: 13  MTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDVINRISL---PSFPGIQPIVARRI 72

Query: 79  CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGL 138
           CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGL
Sbjct: 73  CPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGL 132

Query: 139 DAVAKKAGIDLRKE 151
           DAVAKKAGIDLRK+
Sbjct: 133 DAVAKKAGIDLRKK 143

[Close]

BLAST of CsGy3G011860 vs. ExPASy Swiss-Prot
Match: Q8DG62 (50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpmB PE=3 SV=2)

HSP 1 Score: 99.8 bits (247), Expect = 2.9e-20
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 75  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 134
           R+C  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ 
Sbjct: 3   RVCQLTGKKANNAYAISHSHRRTKKLQQVNLQWKRVWWPEGKRWVRLRLSTKAIKTLERK 62

Query: 135 GLDAVAKKAGIDLRK 150
           GL A AK+AG+DL K
Sbjct: 63  GLSAFAKEAGLDLNK 77

[Close]

BLAST of CsGy3G011860 vs. ExPASy Swiss-Prot
Match: B8HUV7 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rpmB PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.9e-20
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 75  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 134
           R+C  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  
Sbjct: 3   RVCQLTGKRANNAYAVSHSHRRTKKLQEVNLQWKRIWWPQGKRWVRLRLSTKALKTLEHK 62

Query: 135 GLDAVAKKAGIDLRK 150
           GLD+ A++AGIDL K
Sbjct: 63  GLDSFAREAGIDLNK 77

[Close]

BLAST of CsGy3G011860 vs. NCBI nr
Match: XP_004134049.1 (50S ribosomal protein L28, chloroplastic [Cucumis sativus] >KGN56833.1 hypothetical protein Csa_010318 [Cucumis sativus])

HSP 1 Score: 285 bits (729), Expect = 1.19e-96
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60
           MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI
Sbjct: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60

Query: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of CsGy3G011860 vs. NCBI nr
Match: XP_008438484.1 (PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo] >KAA0049228.1 50S ribosomal protein L28 [Cucumis melo var. makuwa] >TYK17330.1 50S ribosomal protein L28 [Cucumis melo var. makuwa])

HSP 1 Score: 269 bits (688), Expect = 2.13e-90
Identity = 141/150 (94.00%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60
           MAASVVFGFTPAAT +GVM TSSTKLHFRTKPNSDLGFL SQLSGI+ISSNHSLISP+ I
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRPSLQP+ARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of CsGy3G011860 vs. NCBI nr
Match: XP_038885053.1 (50S ribosomal protein L28, chloroplastic [Benincasa hispida] >XP_038885060.1 50S ribosomal protein L28, chloroplastic [Benincasa hispida])

HSP 1 Score: 246 bits (628), Expect = 2.79e-81
Identity = 134/150 (89.33%), Postives = 140/150 (93.33%), Query Frame = 0


Query: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60
           MAA VV GFTPA T SGVM  SSTKL F TKPNS+LGFLTSQL+GI+ISSNHSLISP+ I
Sbjct: 1   MAAFVVLGFTPA-TSSGVMAASSTKLQFTTKPNSELGFLTSQLAGIKISSNHSLISPSPI 60

Query: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of CsGy3G011860 vs. NCBI nr
Match: XP_022979375.1 (50S ribosomal protein L28, chloroplastic [Cucurbita maxima])

HSP 1 Score: 244 bits (624), Expect = 1.14e-80
Identity = 131/150 (87.33%), Postives = 140/150 (93.33%), Query Frame = 0


Query: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60
           MA S V GFTP ++ SGVM  SS+KLHFRTKPN +LGFL+SQLSGI+ISSNHSLISP+ I
Sbjct: 1   MAVSAVLGFTPVSS-SGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPI 60

Query: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of CsGy3G011860 vs. NCBI nr
Match: XP_023526300.1 (50S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240 bits (612), Expect = 7.66e-79
Identity = 129/150 (86.00%), Postives = 138/150 (92.00%), Query Frame = 0


Query: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60
           MA S V GFTP  + SGVM  SS+KLHFRTKPN +LGFL+SQLSGI+ISSNHSLIS + I
Sbjct: 1   MAVSAVLGFTPVCS-SGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISSSPI 60

Query: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRP+LQPVARR+CPFTGKKAN+KNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  S-APLRPALQPVARRVCPFTGKKANRKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of CsGy3G011860 vs. ExPASy TrEMBL
Match: A0A0A0L501 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134810 PE=3 SV=1)

HSP 1 Score: 285 bits (729), Expect = 5.78e-97
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60
           MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI
Sbjct: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60

Query: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of CsGy3G011860 vs. ExPASy TrEMBL
Match: A0A5A7U1W6 (50S ribosomal protein L28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001850 PE=3 SV=1)

HSP 1 Score: 269 bits (688), Expect = 1.03e-90
Identity = 141/150 (94.00%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60
           MAASVVFGFTPAAT +GVM TSSTKLHFRTKPNSDLGFL SQLSGI+ISSNHSLISP+ I
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRPSLQP+ARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of CsGy3G011860 vs. ExPASy TrEMBL
Match: A0A1S3AWK5 (50S ribosomal protein L28, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483567 PE=3 SV=1)

HSP 1 Score: 269 bits (688), Expect = 1.03e-90
Identity = 141/150 (94.00%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60
           MAASVVFGFTPAAT +GVM TSSTKLHFRTKPNSDLGFL SQLSGI+ISSNHSLISP+ I
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRPSLQP+ARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]

BLAST of CsGy3G011860 vs. ExPASy TrEMBL
Match: A0A6J1IT28 (50S ribosomal protein L28, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111479118 PE=3 SV=1)

HSP 1 Score: 244 bits (624), Expect = 5.50e-81
Identity = 131/150 (87.33%), Postives = 140/150 (93.33%), Query Frame = 0


Query: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60
           MA S V GFTP ++ SGVM  SS+KLHFRTKPN +LGFL+SQLSGI+ISSNHSLISP+ I
Sbjct: 1   MAVSAVLGFTPVSS-SGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPI 60

Query: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of CsGy3G011860 vs. ExPASy TrEMBL
Match: A0A6J1E916 (50S ribosomal protein L28, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431774 PE=3 SV=1)

HSP 1 Score: 236 bits (603), Expect = 8.72e-78
Identity = 128/150 (85.33%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60
           MA S V GFTP  + SGVM  SS+KLHFR+K N +LGFL+SQLSGI+ISSNHSLIS + I
Sbjct: 1   MAVSAVLGFTPVCS-SGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPI 60

Query: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]

BLAST of CsGy3G011860 vs. TAIR 10
Match: AT2G33450.1 (Ribosomal L28 family )

HSP 1 Score: 174.9 bits (442), Expect = 5.0e-44
Identity = 98/134 (73.13%), Postives = 111/134 (82.84%), Query Frame = 0


Query: 19  MTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHS-LISPASISTAPLRPSLQP-VARRI 78
           MT+S+  +   T  + +LGFLTSQLSG+RIS   S +I+  S+   P  P +QP VARRI
Sbjct: 13  MTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDVINRISL---PSFPGIQPIVARRI 72

Query: 79  CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGL 138
           CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGL
Sbjct: 73  CPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGL 132

Query: 139 DAVAKKAGIDLRKE 151
           DAVAKKAGIDLRK+
Sbjct: 133 DAVAKKAGIDLRKK 143

The following BLAST results are available for this feature:

BLAST of CsGy3G011860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82245	5.8e-45	69.66	50S ribosomal protein L28, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL28 P...	[more]
P30956	1.7e-44	74.59	50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL28 P...	[more]
O22795	7.1e-43	73.13	50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
Q8DG62	2.9e-20	62.67	50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) OX=1972...	[more]
B8HUV7	4.9e-20	62.67	50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39...	[more]

BLAST of CsGy3G011860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134049.1	1.19e-96	100.00	50S ribosomal protein L28, chloroplastic [Cucumis sativus] >KGN56833.1 hypotheti...	[more]
XP_008438484.1	2.13e-90	94.00	PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo] >KAA0049228.1...	[more]
XP_038885053.1	2.79e-81	89.33	50S ribosomal protein L28, chloroplastic [Benincasa hispida] >XP_038885060.1 50S...	[more]
XP_022979375.1	1.14e-80	87.33	50S ribosomal protein L28, chloroplastic [Cucurbita maxima]	[more]
XP_023526300.1	7.66e-79	86.00	50S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy3G011860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L501	5.78e-97	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134810 PE=3 SV=1	[more]
A0A5A7U1W6	1.03e-90	94.00	50S ribosomal protein L28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3AWK5	1.03e-90	94.00	50S ribosomal protein L28, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483567...	[more]
A0A6J1IT28	5.50e-81	87.33	50S ribosomal protein L28, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1E916	8.72e-78	85.33	50S ribosomal protein L28, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of CsGy3G011860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33450.1	5.0e-44	73.13	Ribosomal L28 family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 75..133 e-value: 3.1E-18 score: 65.7
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 22..150
IPR037147	Ribosomal protein L28/L24 superfamily	GENE3D	2.30.170.40	Ribosomal protein L28/L24	coord: 74..150 e-value: 2.5E-28 score: 99.9
IPR001383	Ribosomal protein L28	TIGRFAM	TIGR00009	TIGR00009	coord: 75..130 e-value: 2.1E-16 score: 58.2
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 72..148 score: 13.90849
None	No IPR available	PANTHER	PTHR13528:SF6	50S RIBOSOMAL PROTEIN L28, CHLOROPLASTIC	coord: 22..150
IPR034704	L28p-like	SUPERFAMILY	143800	L28p-like	coord: 75..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G011860.1	CsGy3G011860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome