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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCTCGACCCGGAATTTTCCTCTGTATTTTGGCTTTGATCATAGCCAGTAGCTTCGCTAACCAGCAGCCGGCCAACGTCGGCACTGGCAGCACGAAAACTATTACTGGAGGAGGCGGCGGCGGTGGAGGCGGAGGAGGTGGAGGTGGATCGAGTAGTGGTCCGGCCACGGGCTCTGGGAGCGGTTCGGGGTCAGGAAGTGGTGGCGGGGGGTCGGGTCGGTAG mRNA sequence ATGGCTCGACCCGGAATTTTCCTCTGTATTTTGGCTTTGATCATAGCCAGTAGCTTCGCTAACCAGCAGCCGGCCAACGTCGGCACTGGCAGCACGAAAACTATTACTGGAGGAGGCGGCGGCGGTGGAGGCGGAGGAGGTGGAGGTGGATCGAGTAGTGGTCCGGCCACGGGCTCTGGGAGCGGTTCGGGGTCAGGAAGTGGTGGCGGGGGGTCGGGTCGGTAG Coding sequence (CDS) ATGGCTCGACCCGGAATTTTCCTCTGTATTTTGGCTTTGATCATAGCCAGTAGCTTCGCTAACCAGCAGCCGGCCAACGTCGGCACTGGCAGCACGAAAACTATTACTGGAGGAGGCGGCGGCGGTGGAGGCGGAGGAGGTGGAGGTGGATCGAGTAGTGGTCCGGCCACGGGCTCTGGGAGCGGTTCGGGGTCAGGAAGTGGTGGCGGGGGGTCGGGTCGGTAG Protein sequence MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSGSGSGSGSGGGGSGR*
Homology
BLAST of CsGy3G011260 vs. NCBI nr
Match: KGN56771.1 (hypothetical protein Csa_010322 [Cucumis sativus]) HSP 1 Score: 111 bits (277), Expect = 4.11e-30 Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0
Query: 1 MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSG 60
MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSG
Sbjct: 1 MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSG 60
Query: 61 SGSGSGSGGGGSGR 74
SGSGSGSGGGGSGR
Sbjct: 61 SGSGSGSGGGGSGR 74
BLAST of CsGy3G011260 vs. NCBI nr
Match: KAG6582444.1 (hypothetical protein SDJN03_22446, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 68.6 bits (166), Expect = 4.84e-13 Identity = 53/75 (70.67%), Postives = 57/75 (76.00%), Query Frame = 0
Query: 1 MARPGIFLCILALIIASSFANQQPANVGTGSTKTIT-----GGGGGGGGGGGGGGSSSGP 60
MARPG+FLC L LI++SSFA QQP G +TI GGGGGGGGGGGGGGSSSGP
Sbjct: 1 MARPGVFLCFLVLIVSSSFAQQQPNADAGGCMETINRRGGGGGGGGGGGGGGGGGSSSGP 60
Query: 61 ATGSGSGSGSGSGGG 70
TGSGSGSGSG GGG
Sbjct: 61 GTGSGSGSGSGRGGG 75
BLAST of CsGy3G011260 vs. ExPASy TrEMBL
Match: A0A0A0L9I6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133220 PE=4 SV=1) HSP 1 Score: 111 bits (277), Expect = 1.99e-30 Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0
Query: 1 MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSG 60
MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSG
Sbjct: 1 MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSG 60
Query: 61 SGSGSGSGGGGSGR 74
SGSGSGSGGGGSGR
Sbjct: 61 SGSGSGSGGGGSGR 74
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KGN56771.1 | 4.11e-30 | 100.00 | hypothetical protein Csa_010322 [Cucumis sativus] | [more] |
| KAG6582444.1 | 4.84e-13 | 70.67 | hypothetical protein SDJN03_22446, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L9I6 | 1.99e-30 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133220 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 73..74 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 23..74 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 52..74 |
Relationships
The following mRNA feature(s) are a part of this gene:
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