CsGy3G011260 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G011260
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr3: 8774348 .. 8774572 (+)
RNA-Seq Expression	CsGy3G011260
Synteny	CsGy3G011260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGACCCGGAATTTTCCTCTGTATTTTGGCTTTGATCATAGCCAGTAGCTTCGCTAACCAGCAGCCGGCCAACGTCGGCACTGGCAGCACGAAAACTATTACTGGAGGAGGCGGCGGCGGTGGAGGCGGAGGAGGTGGAGGTGGATCGAGTAGTGGTCCGGCCACGGGCTCTGGGAGCGGTTCGGGGTCAGGAAGTGGTGGCGGGGGGTCGGGTCGGTAG

mRNA sequence

ATGGCTCGACCCGGAATTTTCCTCTGTATTTTGGCTTTGATCATAGCCAGTAGCTTCGCTAACCAGCAGCCGGCCAACGTCGGCACTGGCAGCACGAAAACTATTACTGGAGGAGGCGGCGGCGGTGGAGGCGGAGGAGGTGGAGGTGGATCGAGTAGTGGTCCGGCCACGGGCTCTGGGAGCGGTTCGGGGTCAGGAAGTGGTGGCGGGGGGTCGGGTCGGTAG

Coding sequence (CDS)

ATGGCTCGACCCGGAATTTTCCTCTGTATTTTGGCTTTGATCATAGCCAGTAGCTTCGCTAACCAGCAGCCGGCCAACGTCGGCACTGGCAGCACGAAAACTATTACTGGAGGAGGCGGCGGCGGTGGAGGCGGAGGAGGTGGAGGTGGATCGAGTAGTGGTCCGGCCACGGGCTCTGGGAGCGGTTCGGGGTCAGGAAGTGGTGGCGGGGGGTCGGGTCGGTAG

Protein sequence

MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSGSGSGSGSGGGGSGR*

Homology

[Close]

BLAST of CsGy3G011260 vs. NCBI nr
Match: KGN56771.1 (hypothetical protein Csa_010322 [Cucumis sativus])

HSP 1 Score: 111 bits (277), Expect = 4.11e-30
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSG 60
          MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSG
Sbjct: 1  MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSG 60

Query: 61 SGSGSGSGGGGSGR 74
          SGSGSGSGGGGSGR
Sbjct: 61 SGSGSGSGGGGSGR 74

[Close]

BLAST of CsGy3G011260 vs. NCBI nr
Match: KAG6582444.1 (hypothetical protein SDJN03_22446, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.6 bits (166), Expect = 4.84e-13
Identity = 53/75 (70.67%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 1  MARPGIFLCILALIIASSFANQQPANVGTGSTKTIT-----GGGGGGGGGGGGGGSSSGP 60
          MARPG+FLC L LI++SSFA QQP     G  +TI      GGGGGGGGGGGGGGSSSGP
Sbjct: 1  MARPGVFLCFLVLIVSSSFAQQQPNADAGGCMETINRRGGGGGGGGGGGGGGGGGSSSGP 60

Query: 61 ATGSGSGSGSGSGGG 70
           TGSGSGSGSG GGG
Sbjct: 61 GTGSGSGSGSGRGGG 75

[Close]

BLAST of CsGy3G011260 vs. ExPASy TrEMBL
Match: A0A0A0L9I6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133220 PE=4 SV=1)

HSP 1 Score: 111 bits (277), Expect = 1.99e-30
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSG 60
          MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSG
Sbjct: 1  MARPGIFLCILALIIASSFANQQPANVGTGSTKTITGGGGGGGGGGGGGGSSSGPATGSG 60

Query: 61 SGSGSGSGGGGSGR 74
          SGSGSGSGGGGSGR
Sbjct: 61 SGSGSGSGGGGSGR 74

The following BLAST results are available for this feature:

BLAST of CsGy3G011260 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G011260 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56771.1	4.11e-30	100.00	hypothetical protein Csa_010322 [Cucumis sativus]	[more]
KAG6582444.1	4.84e-13	70.67	hypothetical protein SDJN03_22446, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsGy3G011260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9I6	1.99e-30	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133220 PE=4 SV=1	[more]

BLAST of CsGy3G011260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 73..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G011260.1	CsGy3G011260.1	mRNA