CsGy3G010810 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G010810
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	translation machinery-associated protein 7
Location	Gy14Chr3: 8461955 .. 8464259 (-)
RNA-Seq Expression	CsGy3G010810
Synteny	CsGy3G010810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTATGGCCTGGCTTCTATAAATAGATTTAGCCCTGTCGTTATACTTGAGAAGCCGTCAATTGTCGCGAATCGAGTAATCCCTCTTTGTGTTCTTCTTCGACTCGGGCCAAACCCTAGCGATATCTCAGCCATGTCGTCCAAGCAAGGTACGATCGATCTATTCAGCTTTTTTTTTTTCCCCTCTCGATTTCATCTTCGTTACGGTAGTATCATCGATTGAAATCGGTGTTGTTGGCTATGATATGATCTACAATCCCCGTTTTTACCGACTTAAATCGTGATATTGAGAATCGATTTTGGTTTATGTCTTTGTAGGAGGGAAGGCAAAGCCTCTGAAGCAACCCAAGGTTGATAAGAAAGACTACGACGAGGTATGCTTTTGAATTTATTATTTTATGGATCCATCTCGCGATTAGATTTTTCATGGTTTTCCTTATTTCGGGTTCAATTTTTGGTATCGAAGAATTTCGATCTGCCTTGTGATGTTTTGAAGGCTGTAAATGATTTCATTGAAGTTTAAAATTATTGATTGTTGATCACCCCCTTTTAGAGCCTCATCAAAATTCATGATAAGAGAATAGAAGTTCTGTTTAAGTAACGCGTACCTAAATTTTGGGTTCGATCTAGTTTTTTTGCTTTTTTATTATTATAATTTAATAAAAATTTAGCTGCAAGCATCATTATCGTCGATTCCATTCACCGGAGAGGGAAGGTTCGATTCATTGGTCATTATTAATGGATGCTCTCAGCTGATATCACTTTATTCCAATCATTGATCTTATTAATTAATGGTTACTTGATGAAGGGAAGATGGAGGGAACTGTATCTACCTCTACCCTAATTCGTTCTGGAATATATATATTATAGTTATCTAATTAACCTGGGTTAGATATTATTTTCAAAACTGAAATTTGAATGTTTATGGGTTTTCTCAACAGGTTGATATGGCCAATATGCAAAAGAAGAAGGATGAGGAAAAGGTGAGAACTAGAACCTCATAACTGAAAACTGATGGTCTAATTAGATGCTTTTTGTTTGGTTCTTGAAAGAATGCAAACTGTTCATGTTGGTGCACGTCCTTTTAACTTTTGTTAATTTTGGTTCATTCATTTTCATGCTTTCTATTGAAATTTAGTTTGACAATTCACTCACTAAATTTCTTTAAAATACAACCACAAATTTGTAACAAAGTGTTTCCTCTGTGTATAAGCTTTACGTTAAAATTTTGCAAATAAGAATCATAAACTTAAAATTAAACTTAAAATTGTCACATTAACTTTTTCTTCTGGTCCATTGGTTGTATAATTCTGCGATGTTTGATGATATATACAGGCGCTCAAGGAGCTTAGAGCAAAGGCTCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAGAGTGGGAAGAAATGAGGGGTTCCCACTTCCCACACAAATTCATGGAGGTAGATTTACTTCACGACCTGAAATTGCAGACATTTAATGGCTTTTGAATCAGTTGATTGTCCTTGTGTGTTTTATGTAAAACCCTGAAAAGAAGATGATATGCTGTTGAATGATTATATAGAAGTTGAATGCTTCTCAATATCCTAAACTTTCTTTAGCTAAATATTCTTAACTTTCCTCTCGTCTTTTGTTC

mRNA sequence

ATGCTTTATGGCCTGGCTTCTATAAATAGATTTAGCCCTGTCGTTATACTTGAGAAGCCGTCAATTGTCGCGAATCGAGTAATCCCTCTTTGTGTTCTTCTTCGACTCGGGCCAAACCCTAGCGATATCTCAGCCATGTCGTCCAAGCAAGGAGGGAAGGCAAAGCCTCTGAAGCAACCCAAGGTTGATAAGAAAGACTACGACGAGGTTGATATGGCCAATATGCAAAAGAAGAAGGATGAGGAAAAGGTGAGAACTAGAACCTCATAACTGAAAACTGATGGTCTAATTAGATGCTTTTTGTTTGGTTCTTGAAAGAATGCAAACTGTTCATGTTGGTGCACGTCCTTTTAACTTTTGTTAATTTTGGTTCATTCATTTTCATGCTTTCTATTGAAATTTAGTTTGACAATTCACTCACTAAATTTCTTTAAAATACAACCACAAATTTGTAACAAAGTGTTTCCTCTGTGTATAAGCTTTACGTTAAAATTTTGCAAATAAGAATCATAAACTTAAAATTAAACTTAAAATTGTCACATTAACTTTTTCTTCTGGTCCATTGGTTGTATAATTCTGCGATGTTTGATGATATATACAGGCGCTCAAGGAGCTTAGAGCAAAGGCTCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAGAGTGGGAAGAAATGAGGGGTTCCCACTTCCCACACAAATTCATGGAGGTAGATTTACTTCACGACCTGAAATTGCAGACATTTAATGGCTTTTGAATCAGTTGATTGTCCTTGTGTGTTTTATGTAAAACCCTGAAAAGAAGATGATATGCTGTTGAATGATTATATAGAAGTTGAATGCTTCTCAATATCCTAAACTTTCTTTAGCTAAATATTCTTAACTTTCCTCTCGTCTTTTGTTC

Coding sequence (CDS)

ATGCTTTATGGCCTGGCTTCTATAAATAGATTTAGCCCTGTCGTTATACTTGAGAAGCCGTCAATTGTCGCGAATCGAGTAATCCCTCTTTGTGTTCTTCTTCGACTCGGGCCAAACCCTAGCGATATCTCAGCCATGTCGTCCAAGCAAGGAGGGAAGGCAAAGCCTCTGAAGCAACCCAAGGTTGATAAGAAAGACTACGACGAGGTTGATATGGCCAATATGCAAAAGAAGAAGGATGAGGAAAAGGTGAGAACTAGAACCTCATAA

Protein sequence

MLYGLASINRFSPVVILEKPSIVANRVIPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKVRTRTS*

Homology

[Close]

BLAST of CsGy3G010810 vs. ExPASy Swiss-Prot
Match: Q9XZS3 (Translation machinery-associated protein 7 homolog OS=Drosophila melanogaster OX=7227 GN=CG13364 PE=4 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.0e-04
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 46 MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEK 84
          MS ++GGK KPLK PK D KD DE DMA  QK+K+++K
Sbjct: 1  MSGREGGKKKPLKAPKKDSKDLDEDDMAFKQKQKEQQK 38

[Close]

BLAST of CsGy3G010810 vs. ExPASy Swiss-Prot
Match: Q1HRV4 (Translation machinery-associated protein 7 homolog OS=Aedes aegypti OX=7159 PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 8.6e-04
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 46 MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEK 84
          M+ ++GGK KPLKQPK D K+ DE DMA  QK+K+++K
Sbjct: 1  MTGREGGKKKPLKQPKKDGKEMDEEDMAFKQKQKEQQK 38

[Close]

BLAST of CsGy3G010810 vs. NCBI nr
Match: KGN56723.1 (hypothetical protein Csa_009747 [Cucumis sativus])

HSP 1 Score: 158 bits (399), Expect = 5.33e-48
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1  MLYGLASINRFSPVVILEKPSIVANRVIPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQP 60
          MLYGLASINRFSPVVILEKPSIVANRVIPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQP
Sbjct: 1  MLYGLASINRFSPVVILEKPSIVANRVIPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQP 60

Query: 61 KVDKKDYDEVDMANMQKKKDEEKV 84
          KVDKKDYDEVDMANMQKKKDEEK 
Sbjct: 61 KVDKKDYDEVDMANMQKKKDEEKA 84

[Close]

BLAST of CsGy3G010810 vs. NCBI nr
Match: KAA0049143.1 (F9L1.21 protein [Cucumis melo var. makuwa] >TYK17418.1 F9L1.21 protein [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (346), Expect = 5.67e-40
Identity = 71/80 (88.75%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 5  LASINRFSPVVILEKPSIVANRVIPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQPKVDK 64
          +ASINR SPVVI++KPSIVANR +PLCVLLRLGPNPSDISAMSSKQGGKAKPLKQPKVDK
Sbjct: 1  MASINRRSPVVIVKKPSIVANRAVPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQPKVDK 60

Query: 65 KDYDEVDMANMQKKKDEEKV 84
          KDYDEVDMAN+QKKK+EEK 
Sbjct: 61 KDYDEVDMANIQKKKEEEKA 80

[Close]

BLAST of CsGy3G010810 vs. NCBI nr
Match: XP_022145738.1 (translation machinery-associated protein 7 [Momordica charantia])

HSP 1 Score: 94.7 bits (234), Expect = 5.24e-23
Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 28 IPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKV 84
          IPLC + RLGPNPS ISAMSSKQGGKAKPLKQPKVDKK+YDEVDMAN+QKKKDEEK 
Sbjct: 18 IPLCSI-RLGPNPSKISAMSSKQGGKAKPLKQPKVDKKEYDEVDMANIQKKKDEEKA 73

[Close]

BLAST of CsGy3G010810 vs. NCBI nr
Match: XP_022980452.1 (translation machinery-associated protein 7-like [Cucurbita maxima])

HSP 1 Score: 86.3 bits (212), Expect = 1.26e-19
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 38 PNPSDISAMSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKV 84
          PNP+DISAMSSKQGGKAKPLKQPKV+KKDYDEVDMAN+QKKKDEEK 
Sbjct: 30 PNPNDISAMSSKQGGKAKPLKQPKVEKKDYDEVDMANIQKKKDEEKA 76

[Close]

BLAST of CsGy3G010810 vs. NCBI nr
Match: XP_022924253.1 (translation machinery-associated protein 7-like [Cucurbita moschata])

HSP 1 Score: 86.3 bits (212), Expect = 1.52e-19
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 38 PNPSDISAMSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKV 84
          PNP+DISAMSSKQGGKAKPLKQPKV+KKDYDEVDMAN+QKKKDEEK 
Sbjct: 37 PNPNDISAMSSKQGGKAKPLKQPKVEKKDYDEVDMANIQKKKDEEKA 83

[Close]

BLAST of CsGy3G010810 vs. ExPASy TrEMBL
Match: A0A0A0L4M8 (F9L1.21 protein OS=Cucumis sativus OX=3659 GN=Csa_3G130290 PE=4 SV=1)

HSP 1 Score: 158 bits (399), Expect = 2.58e-48
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1  MLYGLASINRFSPVVILEKPSIVANRVIPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQP 60
          MLYGLASINRFSPVVILEKPSIVANRVIPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQP
Sbjct: 1  MLYGLASINRFSPVVILEKPSIVANRVIPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQP 60

Query: 61 KVDKKDYDEVDMANMQKKKDEEKV 84
          KVDKKDYDEVDMANMQKKKDEEK 
Sbjct: 61 KVDKKDYDEVDMANMQKKKDEEKA 84

[Close]

BLAST of CsGy3G010810 vs. ExPASy TrEMBL
Match: A0A5A7TZV6 (F9L1.21 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002810 PE=4 SV=1)

HSP 1 Score: 137 bits (346), Expect = 2.75e-40
Identity = 71/80 (88.75%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 5  LASINRFSPVVILEKPSIVANRVIPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQPKVDK 64
          +ASINR SPVVI++KPSIVANR +PLCVLLRLGPNPSDISAMSSKQGGKAKPLKQPKVDK
Sbjct: 1  MASINRRSPVVIVKKPSIVANRAVPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQPKVDK 60

Query: 65 KDYDEVDMANMQKKKDEEKV 84
          KDYDEVDMAN+QKKK+EEK 
Sbjct: 61 KDYDEVDMANIQKKKEEEKA 80

[Close]

BLAST of CsGy3G010810 vs. ExPASy TrEMBL
Match: A0A6J1CWS4 (translation machinery-associated protein 7 OS=Momordica charantia OX=3673 GN=LOC111015118 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.54e-23
Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 28 IPLCVLLRLGPNPSDISAMSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKV 84
          IPLC + RLGPNPS ISAMSSKQGGKAKPLKQPKVDKK+YDEVDMAN+QKKKDEEK 
Sbjct: 18 IPLCSI-RLGPNPSKISAMSSKQGGKAKPLKQPKVDKKEYDEVDMANIQKKKDEEKA 73

[Close]

BLAST of CsGy3G010810 vs. ExPASy TrEMBL
Match: A0A6J1IRF0 (translation machinery-associated protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111479817 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.08e-20
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 38 PNPSDISAMSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKV 84
          PNP+DISAMSSKQGGKAKPLKQPKV+KKDYDEVDMAN+QKKKDEEK 
Sbjct: 30 PNPNDISAMSSKQGGKAKPLKQPKVEKKDYDEVDMANIQKKKDEEKA 76

[Close]

BLAST of CsGy3G010810 vs. ExPASy TrEMBL
Match: A0A6J1EBW2 (translation machinery-associated protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC111431777 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.36e-20
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 38 PNPSDISAMSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEKV 84
          PNP+DISAMSSKQGGKAKPLKQPKV+KKDYDEVDMAN+QKKKDEEK 
Sbjct: 37 PNPNDISAMSSKQGGKAKPLKQPKVEKKDYDEVDMANIQKKKDEEKA 83

[Close]

BLAST of CsGy3G010810 vs. TAIR 10
Match: AT1G15270.1 (Translation machinery associated TMA7 )

HSP 1 Score: 67.0 bits (162), Expect = 8.8e-12
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 46 MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEK 84
          MSSKQGGKAKPLKQPK DKK+YDE D+AN+QKKKDEEK
Sbjct: 1  MSSKQGGKAKPLKQPKADKKEYDETDLANIQKKKDEEK 38

[Close]

BLAST of CsGy3G010810 vs. TAIR 10
Match: AT3G16040.1 (Translation machinery associated TMA7 )

HSP 1 Score: 57.8 bits (138), Expect = 5.3e-09
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 46 MSSKQGGKAKPLKQPKVDKKDYDEVDMANMQKKKDEEK 84
          MSSKQGGK KPLKQPK  KK+YDE DM  MQKKKDEEK
Sbjct: 1  MSSKQGGKLKPLKQPKSGKKEYDEHDMELMQKKKDEEK 38

The following BLAST results are available for this feature:

BLAST of CsGy3G010810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XZS3	5.0e-04	60.53	Translation machinery-associated protein 7 homolog OS=Drosophila melanogaster OX...	[more]
Q1HRV4	8.6e-04	57.89	Translation machinery-associated protein 7 homolog OS=Aedes aegypti OX=7159 PE=3...	[more]

BLAST of CsGy3G010810 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56723.1	5.33e-48	98.81	hypothetical protein Csa_009747 [Cucumis sativus]	[more]
KAA0049143.1	5.67e-40	88.75	F9L1.21 protein [Cucumis melo var. makuwa] >TYK17418.1 F9L1.21 protein [Cucumis ...	[more]
XP_022145738.1	5.24e-23	87.72	translation machinery-associated protein 7 [Momordica charantia]	[more]
XP_022980452.1	1.26e-19	91.49	translation machinery-associated protein 7-like [Cucurbita maxima]	[more]
XP_022924253.1	1.52e-19	91.49	translation machinery-associated protein 7-like [Cucurbita moschata]	[more]

BLAST of CsGy3G010810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4M8	2.58e-48	98.81	F9L1.21 protein OS=Cucumis sativus OX=3659 GN=Csa_3G130290 PE=4 SV=1	[more]
A0A5A7TZV6	2.75e-40	88.75	F9L1.21 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G0028...	[more]
A0A6J1CWS4	2.54e-23	87.72	translation machinery-associated protein 7 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1IRF0	6.08e-20	91.49	translation machinery-associated protein 7-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1EBW2	7.36e-20	91.49	translation machinery-associated protein 7-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CsGy3G010810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15270.1	8.8e-12	86.84	Translation machinery associated TMA7	[more]
AT3G16040.1	5.3e-09	81.58	Translation machinery associated TMA7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015157	Translation machinery associated TMA7	PFAM	PF09072	TMA7	coord: 48..84 e-value: 3.9E-11 score: 43.7
IPR015157	Translation machinery associated TMA7	PANTHER	PTHR28632	TRANSLATION MACHINERY-ASSOCIATED PROTEIN 7	coord: 26..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..89
None	No IPR available	PANTHER	PTHR28632:SF9	F9L1.21 PROTEIN	coord: 26..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G010810.2	CsGy3G010810.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation