CsGy3G009825 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G009825
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Chromo domain protein LHP1-like
Location	Gy14Chr3: 7868761 .. 7869587 (-)
RNA-Seq Expression	CsGy3G009825
Synteny	CsGy3G009825

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTATGGTACCTGATTATCCATCTTACTTGGCATAGACTAGACCATCATGACCCACAAAGATACATACATTGTCTCCTTTCTATTTCTTTCAATTGATAAGTAATTAGTTACTCATCAAGCTTTAAACAGTTTGCTCGGGTTGGCATCCAATCCAACCTATATTCTCTATAAGACGTGATTAAATAAACTGAAATTCTCTAGTCTTCGTCATTGATCAACTAATATGCTGACCTTCACAAAGCATGAAAAGAAGCGAAGCTTTTCCAAAGTCACTCCTACCACCAACAAACAGCCTTTTCCCCTCTCAATATCACTCTTTTGCAACCCAAAGTTCTGATTCAGAGAAAGATAATGGGATATGCTACTGCAGGTCCATCTCCTGTTGTACCTTGTATCATAGTTGGATTTCTGGGGATGATAATATTTTGGCCTACTCTTTCATCCATCTGGGAAAGCATAGAGCCTCTACTTGAACTGGGCATTTGGGTTGCAGTGATTCTTCTTTTCCTCTTACTGCTTGTACACTTTCTTTCTATATTCTTTCCCGTTCTTCATGCTTCTTCATCCACTTTTGCAGTTCAGCATTCCAGCAGCCCTGGCTACGATGCTGATGGATTCGGTTTCGGGTCAGGAGCATTGCTTCTAGGTCTTCTCTTCCTTGTCCTCTATTATCTGTTGTAATCCTATCCTAGTACTAGCATAATATAGCTTTTTCTTATCACTTCCACATGTATGCTTTTGTATACATATTCAGTTATCCATCTCTCTTGCTAGTAGGCAAAGTGACTTACTTTGACCAACAAGAGAACAAGCCCTCTCCATGG

mRNA sequence

TTCTTATGGTACCTGATTATCCATCTTACTTGGCATAGACTAGACCATCATGACCCACAAAGATACATACATTGTCTCCTTTCTATTTCTTTCAATTGATAAGTAATTAGTTACTCATCAAGCTTTAAACAGTTTGCTCGGGTTGGCATCCAATCCAACCTATATTCTCTATAAGACGTGATTAAATAAACTGAAATTCTCTAGTCTTCGTCATTGATCAACTAATATGCTGACCTTCACAAAGCATGAAAAGAAGCGAAGCTTTTCCAAAGTCACTCCTACCACCAACAAACAGCCTTTTCCCCTCTCAATATCACTCTTTTGCAACCCAAAGTTCTGATTCAGAGAAAGATAATGGGATATGCTACTGCAGGTCCATCTCCTGTTGTACCTTGTATCATAGTTGGATTTCTGGGGATGATAATATTTTGGCCTACTCTTTCATCCATCTGGGAAAGCATAGAGCCTCTACTTGAACTGGGCATTTGGGTTGCAGTGATTCTTCTTTTCCTCTTACTGCTTGTACACTTTCTTTCTATATTCTTTCCCGTTCTTCATGCTTCTTCATCCACTTTTGCAGTTCAGCATTCCAGCAGCCCTGGCTACGATGCTGATGGATTCGGTTTCGGGTCAGGAGCATTGCTTCTAGGTCTTCTCTTCCTTGTCCTCTATTATCTGTTGTAATCCTATCCTAGTACTAGCATAATATAGCTTTTTCTTATCACTTCCACATGTATGCTTTTGTATACATATTCAGTTATCCATCTCTCTTGCTAGTAGGCAAAGTGACTTACTTTGACCAACAAGAGAACAAGCCCTCTCCATGG

Coding sequence (CDS)

ATGGGATATGCTACTGCAGGTCCATCTCCTGTTGTACCTTGTATCATAGTTGGATTTCTGGGGATGATAATATTTTGGCCTACTCTTTCATCCATCTGGGAAAGCATAGAGCCTCTACTTGAACTGGGCATTTGGGTTGCAGTGATTCTTCTTTTCCTCTTACTGCTTGTACACTTTCTTTCTATATTCTTTCCCGTTCTTCATGCTTCTTCATCCACTTTTGCAGTTCAGCATTCCAGCAGCCCTGGCTACGATGCTGATGGATTCGGTTTCGGGTCAGGAGCATTGCTTCTAGGTCTTCTCTTCCTTGTCCTCTATTATCTGTTGTAA

Protein sequence

MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFLSIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL*

Homology

[Close]

BLAST of CsGy3G009825 vs. NCBI nr
Match: KGN56618.1 (hypothetical protein Csa_011306 [Cucumis sativus])

HSP 1 Score: 207 bits (528), Expect = 2.57e-67
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL 60
           MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL
Sbjct: 1   MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL 60

Query: 61  SIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL 109
           SIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL
Sbjct: 61  SIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL 109

[Close]

BLAST of CsGy3G009825 vs. NCBI nr
Match: KAA0049056.1 (chromo domain protein LHP1-like [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (498), Expect = 1.09e-57
Identity = 104/109 (95.41%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 1   MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL 60
           MGY T+GPSPVVPCIIVGFLG+IIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL
Sbjct: 428 MGYTTSGPSPVVPCIIVGFLGLIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL 487

Query: 61  SIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL 109
           SIFFPVLHASS TFAVQHSSSPGYDADGFGFGSGAL LGLLFLVLYYLL
Sbjct: 488 SIFFPVLHASS-TFAVQHSSSPGYDADGFGFGSGALFLGLLFLVLYYLL 535

[Close]

BLAST of CsGy3G009825 vs. NCBI nr
Match: TYK17507.1 (chromo domain protein LHP1-like [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (498), Expect = 1.11e-57
Identity = 104/109 (95.41%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 1   MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL 60
           MGY T+GPSPVVPCIIVGFLG+IIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL
Sbjct: 429 MGYTTSGPSPVVPCIIVGFLGLIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL 488

Query: 61  SIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL 109
           SIFFPVLHASS TFAVQHSSSPGYDADGFGFGSGAL LGLLFLVLYYLL
Sbjct: 489 SIFFPVLHASS-TFAVQHSSSPGYDADGFGFGSGALFLGLLFLVLYYLL 536

[Close]

BLAST of CsGy3G009825 vs. NCBI nr
Match: KAG6582549.1 (hypothetical protein SDJN03_22551, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109 bits (273), Expect = 6.89e-29
Identity = 63/109 (57.80%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 1   MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL 60
           MG+ TAGPSP+VPCIIVGFLGMIIFWPTL SIWES+E LLEL                  
Sbjct: 1   MGH-TAGPSPIVPCIIVGFLGMIIFWPTLLSIWESVESLLEL------------------ 60

Query: 61  SIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL 109
                          V H+S+PGYD+DGFGFGSG L LGLLFLVLY LL
Sbjct: 61  ---------------VHHNSTPGYDSDGFGFGSGTLFLGLLFLVLYNLL 75

[Close]

BLAST of CsGy3G009825 vs. NCBI nr
Match: EXB70623.1 (hypothetical protein L484_023808 [Morus notabilis])

HSP 1 Score: 83.6 bits (205), Expect = 3.13e-18
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 7   GPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFLSIFFPV 66
           GPSP+VP + VG LG++I WP L S+WE + P+L+LG  +A++LL L+LL+H LS +FP 
Sbjct: 6   GPSPLVPFLTVGTLGLLICWPLLLSLWEIVIPILQLGSGLAMVLLILVLLIHLLSSYFPT 65

Query: 67  LHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYL 108
           L +S   +    +S  G   DGFGFG   ++L LLFLVLY L
Sbjct: 66  LGSSCFGYGYASASDGG---DGFGFG---MILLLLFLVLYNL 101

[Close]

BLAST of CsGy3G009825 vs. ExPASy TrEMBL
Match: A0A0A0L4E9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G126815 PE=4 SV=1)

HSP 1 Score: 207 bits (528), Expect = 1.25e-67
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL 60
           MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL
Sbjct: 1   MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL 60

Query: 61  SIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL 109
           SIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL
Sbjct: 61  SIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL 109

[Close]

BLAST of CsGy3G009825 vs. ExPASy TrEMBL
Match: A0A5A7U472 (Chromo domain protein LHP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G002840 PE=4 SV=1)

HSP 1 Score: 196 bits (498), Expect = 5.28e-58
Identity = 104/109 (95.41%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 1   MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL 60
           MGY T+GPSPVVPCIIVGFLG+IIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL
Sbjct: 428 MGYTTSGPSPVVPCIIVGFLGLIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL 487

Query: 61  SIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL 109
           SIFFPVLHASS TFAVQHSSSPGYDADGFGFGSGAL LGLLFLVLYYLL
Sbjct: 488 SIFFPVLHASS-TFAVQHSSSPGYDADGFGFGSGALFLGLLFLVLYYLL 535

[Close]

BLAST of CsGy3G009825 vs. ExPASy TrEMBL
Match: A0A5D3D0R0 (Chromo domain protein LHP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003740 PE=4 SV=1)

HSP 1 Score: 196 bits (498), Expect = 5.39e-58
Identity = 104/109 (95.41%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 1   MGYATAGPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL 60
           MGY T+GPSPVVPCIIVGFLG+IIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL
Sbjct: 429 MGYTTSGPSPVVPCIIVGFLGLIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFL 488

Query: 61  SIFFPVLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL 109
           SIFFPVLHASS TFAVQHSSSPGYDADGFGFGSGAL LGLLFLVLYYLL
Sbjct: 489 SIFFPVLHASS-TFAVQHSSSPGYDADGFGFGSGALFLGLLFLVLYYLL 536

[Close]

BLAST of CsGy3G009825 vs. ExPASy TrEMBL
Match: W9R577 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_023808 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.51e-18
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 7   GPSPVVPCIIVGFLGMIIFWPTLSSIWESIEPLLELGIWVAVILLFLLLLVHFLSIFFPV 66
           GPSP+VP + VG LG++I WP L S+WE + P+L+LG  +A++LL L+LL+H LS +FP 
Sbjct: 6   GPSPLVPFLTVGTLGLLICWPLLLSLWEIVIPILQLGSGLAMVLLILVLLIHLLSSYFPT 65

Query: 67  LHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYL 108
           L +S   +    +S  G   DGFGFG   ++L LLFLVLY L
Sbjct: 66  LGSSCFGYGYASASDGG---DGFGFG---MILLLLFLVLYNL 101

[Close]

BLAST of CsGy3G009825 vs. ExPASy TrEMBL
Match: A0A2P5EPJ7 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_166450 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.45e-18
Identity = 57/104 (54.81%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 7   GPSPVVPCIIVGFLGMIIFWPTLSSIW-ESIEPLLELGIWVAVILLFLLLLVHFLSIFFP 66
           GPSP+VP ++VG LG+II  P L S+W + I PLLE+G  VA+++L LLLLVH +S  FP
Sbjct: 5   GPSPLVPLLMVGALGLIICGPFLLSLWGDIIVPLLEIGSGVAILVLVLLLLVHLVSSLFP 64

Query: 67  VLHASSSTFAVQHSSSPGYDADGFGFGSGALLLGLLFLVLYYLL 109
               SSS FA   +S   YD DGF  G    LL LLFLVLY LL
Sbjct: 65  TFGKSSS-FATTSASVSAYDGDGFVIGMFNFLLLLLFLVLYRLL 107

The following BLAST results are available for this feature:

BLAST of CsGy3G009825 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G009825 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56618.1	2.57e-67	100.00	hypothetical protein Csa_011306 [Cucumis sativus]	[more]
KAA0049056.1	1.09e-57	95.41	chromo domain protein LHP1-like [Cucumis melo var. makuwa]	[more]
TYK17507.1	1.11e-57	95.41	chromo domain protein LHP1-like [Cucumis melo var. makuwa]	[more]
KAG6582549.1	6.89e-29	57.80	hypothetical protein SDJN03_22551, partial [Cucurbita argyrosperma subsp. sorori...	[more]
EXB70623.1	3.13e-18	50.00	hypothetical protein L484_023808 [Morus notabilis]	[more]

BLAST of CsGy3G009825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4E9	1.25e-67	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G126815 PE=4 SV=1	[more]
A0A5A7U472	5.28e-58	95.41	Chromo domain protein LHP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3D0R0	5.39e-58	95.41	Chromo domain protein LHP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
W9R577	1.51e-18	50.00	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_023808 PE=4 SV=1	[more]
A0A2P5EPJ7	2.45e-18	54.81	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_166450 PE=4 SV...	[more]

BLAST of CsGy3G009825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G009825.1	CsGy3G009825.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006325	chromatin organization
cellular_component	GO:0016021	integral component of membrane