CsGy3G008930 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G008930
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Mediator of RNA polymerase II transcription subunit 2-like
Location	Gy14Chr3: 7314250 .. 7315980 (+)
RNA-Seq Expression	CsGy3G008930
Synteny	CsGy3G008930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGAATTAGGGTTTAAGAAGACGACGTTGGGATATCCAAATTTCTGGCGGCAGACCAACAATATGTCGAAGAAGAACAGTCTTTCGCGCAGGAAGAAACAATATGAATTCGACCTTCAAAGTAACTTCTAATCATGGATTAATTTTTCGAATAATTTGTTTGGTTGTTCGTTCATTCGTTCGTTCCAGTTGATTCACTATTTTCGTGGTTCTTATGTAATGTTCTTACCAGGGGAGAAACAAGAAAAGGAAAAGGCTGCTAAGAAGCTTCAAGCAAAGAAGAATAGTATGAAAGTAAATCTCTCTCTTTCACTCTACTGAATCCAGAAAAGTAGAATTTTCTGCTTCGTTTATAGAAAAACGTTTAATTATTAGGGGTAGAAAAGTAGAATTTTCTGCTTCGTTTATAGAAAAACGTTTAATTATTAGGGGTAGAAAAGTAGGACGATTTAGGAATTTCATCGTATGAGTAATTTTCTAGTTTTTACATACTCCAGTGGGATTGTGAAGTTCAATGACTTTCTACTGCTTAATTTCTTGGGTGATTTGGCAATTTTCGATGGAGTTGAAACAAGTTCTGTTTGTTTGTGTGCTTGTTCTTTTGATATCATTCAAAAGTCTCATGATTTTCGTATAACTTTGTTCATAGGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAACAGCAAAAGCAAAAGCTTCTCAAGCTATGGAGCTTGATAAATGAGGTTTGATATGTATATTTTTTGGCCCTGTATTGATGAATTGACATATTGATTTAGTTTTACAAAGAAAAATCTTCCATTCGTAGTAAGCTTTGATCTCTAATGTCTTGAGTACTGATTCGAATCTGATTTATAAGAAATTCTTAATCATTACCTAATACTAAATGCAAATTCAAAGAAAATGTTCCATCATTTGAACTCGGAAATTGCTCTGTCAAGAATATCTCTTTCTTTTTCTTACTTTCTTAGGTGTTCAAACAAAAAGTAATCCCCATCATCTCAATCTTGAATCATATTACTAGCTGTATCGGATAATTTCATGTCCCCTTCATGAGTGTCTCCTAATGTGAATGTCTATAGAAACTCGAATTATAACGTATTTGGTCGTCTAATTTGAACTGGAAATCGGGTTGTGTCGTTTGATTCCATAAACGGTTTTTGTTATCATGTCTTTAGGTTGGCAATGGGTGCAGAGGCTGAATCTTCAGGGTACCATTAGCCCTTCGTTTTGGAGAAAATCTGGTGAAATGCATTGGCATTATTTGAACTCAAGTAGTTTATCATTGAAGATCCAATTCGTCTCATTCTTTTAGATCTCAGTCCCTTTCTTGTAATCTAATTCGAGTAGTACTCATTTGATATTTTTCCTTCTGTTTAGCATGTCCTTGTACATTATTTCATACTTTTCAATGAAAGCTCCACTTTTTTGTCAAGAAAACATATGGCTTATGGGTTTTATATTGAGCTTGCGTGTTCATATCCAAGAGTTCATTTTGCTATTGAGCTGCTTCATCTTTGCTTATTGTCAAGTACCTGATCCCTTATTAAAGGGACCCCTAAATAGTAATTCTCATTCATAGGATCGTCGTAACAAATAATTTTTAACCTTAACGACAAATGAAGATTCATAAACTGTTAGCTTTCAATTTTGTAACGATCTCACTTTTGTAAAACTGCT

mRNA sequence

TATGAATTAGGGTTTAAGAAGACGACGTTGGGATATCCAAATTTCTGGCGGCAGACCAACAATATGTCGAAGAAGAACAGTCTTTCGCGCAGGAAGAAACAATATGAATTCGACCTTCAAAGGGAGAAACAAGAAAAGGAAAAGGCTGCTAAGAAGCTTCAAGCAAAGAAGAATAGTATGAAAGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAACAGCAAAAGCAAAAGCTTCTCAAGCTATGGAGCTTGATAAATGAGGTTGGCAATGGGTGCAGAGGCTGAATCTTCAGGGTACCATTAGCCCTTCGTTTTGGAGAAAATCTGGTGAAATGCATTGGCATTATTTGAACTCAAGTAGTTTATCATTGAAGATCCAATTCGTCTCATTCTTTTAGATCTCAGTCCCTTTCTTGTAATCTAATTCGAGTAGTACTCATTTGATATTTTTCCTTCTGTTTAGCATGTCCTTGTACATTATTTCATACTTTTCAATGAAAGCTCCACTTTTTTGTCAAGAAAACATATGGCTTATGGGTTTTATATTGAGCTTGCGTGTTCATATCCAAGAGTTCATTTTGCTATTGAGCTGCTTCATCTTTGCTTATTGTCAAGTACCTGATCCCTTATTAAAGGGACCCCTAAATAGTAATTCTCATTCATAGGATCGTCGTAACAAATAATTTTTAACCTTAACGACAAATGAAGATTCATAAACTGTTAGCTTTCAATTTTGTAACGATCTCACTTTTGTAAAACTGCT

Coding sequence (CDS)

ATGTCGAAGAAGAACAGTCTTTCGCGCAGGAAGAAACAATATGAATTCGACCTTCAAAGGGAGAAACAAGAAAAGGAAAAGGCTGCTAAGAAGCTTCAAGCAAAGAAGAATAGTATGAAAGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAACAGCAAAAGCAAAAGCTTCTCAAGCTATGGAGCTTGATAAATGA

Protein sequence

MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKKVKTKLTATAKAKASQAMELDK*

Homology

[Close]

BLAST of CsGy3G008930 vs. NCBI nr
Match: KGN56523.1 (hypothetical protein Csa_010072 [Cucumis sativus])

HSP 1 Score: 140 bits (352), Expect = 2.42e-41
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60

Query: 61 VKTKLTATAKAKASQAMELDK 81
          VKTKLTATAKAKASQAMELDK
Sbjct: 61 VKTKLTATAKAKASQAMELDK 81

[Close]

BLAST of CsGy3G008930 vs. NCBI nr
Match: KAA0048973.1 (mediator of RNA polymerase II transcription subunit 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (341), Expect = 1.16e-39
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKN+MKVDGSGKKKKGGGGFQVGKKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKK 60

Query: 61 VKTKLTATAKAKASQAMELDK 81
          VKTKLTA AKAKASQAM+LDK
Sbjct: 61 VKTKLTAAAKAKASQAMDLDK 81

[Close]

BLAST of CsGy3G008930 vs. NCBI nr
Match: XP_030457135.1 (uncharacterized protein LOC115678006 [Syzygium oleosum])

HSP 1 Score: 126 bits (317), Expect = 5.29e-36
Identity = 73/81 (90.12%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKNSLSRRKKQYEFDL+REK EKEKAAKKLQAKKN MKVDGSGKKKKG GGFQVGK+K
Sbjct: 1  MSKKNSLSRRKKQYEFDLRREKAEKEKAAKKLQAKKNKMKVDGSGKKKKGAGGFQVGKRK 60

Query: 61 VKTKLTATAKAKASQAMELDK 81
          +KTKLTA AKAKA+QAMELDK
Sbjct: 61 LKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of CsGy3G008930 vs. NCBI nr
Match: XP_022941890.1 (uncharacterized protein LOC111447114 [Cucurbita moschata] >XP_022974605.1 uncharacterized protein LOC111473288 [Cucurbita maxima] >XP_023540792.1 uncharacterized protein LOC111801059 [Cucurbita pepo subsp. pepo] >KAG6597121.1 hypothetical protein SDJN03_10301, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028585.1 hypothetical protein SDJN02_09766 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126 bits (317), Expect = 5.29e-36
Identity = 73/81 (90.12%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+LSRRK Q+EFDL+REKQEKEKAAKKLQAKKN MKVDGSGKKKKGG GFQVGKKK
Sbjct: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60

Query: 61 VKTKLTATAKAKASQAMELDK 81
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTAAAKAKAAQAMELDK 81

[Close]

BLAST of CsGy3G008930 vs. NCBI nr
Match: XP_022147302.1 (uncharacterized protein LOC111016287 [Momordica charantia])

HSP 1 Score: 124 bits (312), Expect = 3.06e-35
Identity = 71/80 (88.75%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+LSRRKKQ+EFDL+REK E+EKAAKKLQAKKN MKVDGSGK+KKGGGGFQVGKKK
Sbjct: 1  MSKKNNLSRRKKQHEFDLKREKDEREKAAKKLQAKKNQMKVDGSGKQKKGGGGFQVGKKK 60

Query: 61 VKTKLTATAKAKASQAMELD 80
          VKTKLTA AKAKA+QAMELD
Sbjct: 61 VKTKLTAAAKAKAAQAMELD 80

[Close]

BLAST of CsGy3G008930 vs. ExPASy TrEMBL
Match: A0A0A0L493 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122470 PE=4 SV=1)

HSP 1 Score: 140 bits (352), Expect = 1.17e-41
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60

Query: 61 VKTKLTATAKAKASQAMELDK 81
          VKTKLTATAKAKASQAMELDK
Sbjct: 61 VKTKLTATAKAKASQAMELDK 81

[Close]

BLAST of CsGy3G008930 vs. ExPASy TrEMBL
Match: A0A5A7TZC8 (Mediator of RNA polymerase II transcription subunit 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001950 PE=4 SV=1)

HSP 1 Score: 135 bits (341), Expect = 5.59e-40
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKN+MKVDGSGKKKKGGGGFQVGKKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKK 60

Query: 61 VKTKLTATAKAKASQAMELDK 81
          VKTKLTA AKAKASQAM+LDK
Sbjct: 61 VKTKLTAAAKAKASQAMDLDK 81

[Close]

BLAST of CsGy3G008930 vs. ExPASy TrEMBL
Match: A0A6J1IED7 (uncharacterized protein LOC111473288 OS=Cucurbita maxima OX=3661 GN=LOC111473288 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 2.56e-36
Identity = 73/81 (90.12%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+LSRRK Q+EFDL+REKQEKEKAAKKLQAKKN MKVDGSGKKKKGG GFQVGKKK
Sbjct: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60

Query: 61 VKTKLTATAKAKASQAMELDK 81
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTAAAKAKAAQAMELDK 81

[Close]

BLAST of CsGy3G008930 vs. ExPASy TrEMBL
Match: A0A6J1FV29 (uncharacterized protein LOC111447114 OS=Cucurbita moschata OX=3662 GN=LOC111447114 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 2.56e-36
Identity = 73/81 (90.12%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+LSRRK Q+EFDL+REKQEKEKAAKKLQAKKN MKVDGSGKKKKGG GFQVGKKK
Sbjct: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60

Query: 61 VKTKLTATAKAKASQAMELDK 81
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTAAAKAKAAQAMELDK 81

[Close]

BLAST of CsGy3G008930 vs. ExPASy TrEMBL
Match: A0A6J1D208 (uncharacterized protein LOC111016287 OS=Momordica charantia OX=3673 GN=LOC111016287 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 1.48e-35
Identity = 71/80 (88.75%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+LSRRKKQ+EFDL+REK E+EKAAKKLQAKKN MKVDGSGK+KKGGGGFQVGKKK
Sbjct: 1  MSKKNNLSRRKKQHEFDLKREKDEREKAAKKLQAKKNQMKVDGSGKQKKGGGGFQVGKKK 60

Query: 61 VKTKLTATAKAKASQAMELD 80
          VKTKLTA AKAKA+QAMELD
Sbjct: 61 VKTKLTAAAKAKAAQAMELD 80

[Close]

BLAST of CsGy3G008930 vs. TAIR 10
Match: AT2G45860.1 (unknown protein; Has 32 Blast hits to 32 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 96.7 bits (239), Expect = 9.4e-21
Identity = 58/80 (72.50%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+L++RKKQ+E++LQ+EK+ ++K  KKL A KN MKVDGSGKKKK  GGF VGKKK
Sbjct: 1  MSKKNNLAKRKKQHEYNLQKEKELQDKKIKKLHANKNKMKVDGSGKKKK--GGFSVGKKK 60

Query: 61 VKTKLTATAKAKASQAMELD 81
          +KTKLT TAKAKA+QAMELD
Sbjct: 61 LKTKLTPTAKAKAAQAMELD 78

The following BLAST results are available for this feature:

BLAST of CsGy3G008930 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G008930 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56523.1	2.42e-41	100.00	hypothetical protein Csa_010072 [Cucumis sativus]	[more]
KAA0048973.1	1.16e-39	96.30	mediator of RNA polymerase II transcription subunit 2-like [Cucumis melo var. ma...	[more]
XP_030457135.1	5.29e-36	90.12	uncharacterized protein LOC115678006 [Syzygium oleosum]	[more]
XP_022941890.1	5.29e-36	90.12	uncharacterized protein LOC111447114 [Cucurbita moschata] >XP_022974605.1 unchar...	[more]
XP_022147302.1	3.06e-35	88.75	uncharacterized protein LOC111016287 [Momordica charantia]	[more]

BLAST of CsGy3G008930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L493	1.17e-41	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122470 PE=4 SV=1	[more]
A0A5A7TZC8	5.59e-40	96.30	Mediator of RNA polymerase II transcription subunit 2-like OS=Cucumis melo var. ...	[more]
A0A6J1IED7	2.56e-36	90.12	uncharacterized protein LOC111473288 OS=Cucurbita maxima OX=3661 GN=LOC111473288...	[more]
A0A6J1FV29	2.56e-36	90.12	uncharacterized protein LOC111447114 OS=Cucurbita moschata OX=3662 GN=LOC1114471...	[more]
A0A6J1D208	1.48e-35	88.75	uncharacterized protein LOC111016287 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of CsGy3G008930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45860.1	9.4e-21	72.50	unknown protein; Has 32 Blast hits to 32 proteins in 13 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..81
None	No IPR available	PANTHER	PTHR36745	OS02G0824400 PROTEIN	coord: 1..81
None	No IPR available	PANTHER	PTHR36745:SF1	OS02G0824400 PROTEIN	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G008930.1	CsGy3G008930.1	mRNA