CsGy3G008720 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G008720
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Zinc finger protein
Location	Gy14Chr3: 7174349 .. 7175602 (+)
RNA-Seq Expression	CsGy3G008720
Synteny	CsGy3G008720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTCCCTCGTTTGGGACCCTCCATCCGCGCCGCCGCCGCTTTACGGCGTCTCCACCGTCCACTTTCATCTCTTCCGGCCACCATTTCTATTCTTTACACTCATCATTCTCTCTCTATAATTACACAATTTTCTTCTCATCCATGAACCGCCGTATAATCCCCCTTCTCTTTGCCGTTCCACAAACAGAACCGGAACCGGAATCCTCTCTCTCACCCACCGCCATGGGCTATCCCATAGGCTACGCCGACATGTTTTTCCCCAACGCCTTTCTCCATCTCCTCTTCTTCCTTGGTTACATCCGAAGCCTCATTGTTTCGCTCTTTCAATTTCTAGGGCTTTCGGATTTTCTCGAATCCAACGTCGTTTGGCCCGAAAATCCGACCTCGATCTTCTACGATCGATCCGTACCCACAATCCTCATCGAGAAATTCGTCCCCGTCGTTAAGTTCACCGACATCGTCGCCGCCGTCGAGTTTCCACCGGAGTGTTGCGCCGTTTGTCTTTGTGAGTTTCAGGACGATGATGAGGTTAGGTTTTTGAAAAACTGTAAACACATTTTTCATAAAGAATGTTTGGATCGATGGATGATTCGCGATCAGAGAAGCTGTCCTCTATGTAGAACCCTAATCGTGCCGGAGGAGTCGATTCCGCCACTAATGGATTTTTCCGACTGCACCGAGTTTTCCGGCTACTATAGCTAAGTTTTTTACTTTTTTTTTTCTTAATTAAAAAGAAAAAAAAATGTTTCTTAATTATTTATCAACCAAAAAATTGTTAATGGTTGTGTAGATAAAATCATATTTTGTTACCCAAGAAAAGCCTAAGTAAAATAAAATGTGAATTTCCATATTAAAATGAAATTCCATTTACATTCAATCTTCTCCTAAGCATATTTTGTGTTATTCAAGGAGGAAGAAAAAATAATTGTGCTGCTAATCCAACTTTGTGGGATCATTAAGATAAAACAATTGGGTTTTAGTCTTAATTTAGTTTAATTATAATAATAAATAATTTTTTCCTTGTAATTTTAAACTTTTTGTCCACTAGTGATAGTACAGCTGGCTGTTTTTGATTCAAATCCCTCCACTTTGTGATAATTAAAAAAGAAAAAGAAAACAATGATGAAGGTAACAATAAAATAAAGAACTAAAAAGAAATTTTCCTAACCAGCACAAGTAGCAATAGCATAGATATTATTCAAAATTTTGACATGAATTGTTAGAGTTGTCATTGTATTAAAAAAATTTGTACG

mRNA sequence

CATTCCCTCGTTTGGGACCCTCCATCCGCGCCGCCGCCGCTTTACGGCGTCTCCACCGTCCACTTTCATCTCTTCCGGCCACCATTTCTATTCTTTACACTCATCATTCTCTCTCTATAATTACACAATTTTCTTCTCATCCATGAACCGCCGTATAATCCCCCTTCTCTTTGCCGTTCCACAAACAGAACCGGAACCGGAATCCTCTCTCTCACCCACCGCCATGGGCTATCCCATAGGCTACGCCGACATGTTTTTCCCCAACGCCTTTCTCCATCTCCTCTTCTTCCTTGGTTACATCCGAAGCCTCATTGTTTCGCTCTTTCAATTTCTAGGGCTTTCGGATTTTCTCGAATCCAACGTCGTTTGGCCCGAAAATCCGACCTCGATCTTCTACGATCGATCCGTACCCACAATCCTCATCGAGAAATTCGTCCCCGTCGTTAAGTTCACCGACATCGTCGCCGCCGTCGAGTTTCCACCGGAGTGTTGCGCCGTTTGTCTTTGTGAGTTTCAGGACGATGATGAGGTTAGGTTTTTGAAAAACTGTAAACACATTTTTCATAAAGAATGTTTGGATCGATGGATGATTCGCGATCAGAGAAGCTGTCCTCTATGTAGAACCCTAATCGTGCCGGAGGAGTCGATTCCGCCACTAATGGATTTTTCCGACTGCACCGAGTTTTCCGGCTACTATAGCTAAGTTTTTTACTTTTTTTTTTCTTAATTAAAAAGAAAAAAAAATGTTTCTTAATTATTTATCAACCAAAAAATTGTTAATGGTTGTGTAGATAAAATCATATTTTGTTACCCAAGAAAAGCCTAAGTAAAATAAAATGTGAATTTCCATATTAAAATGAAATTCCATTTACATTCAATCTTCTCCTAAGCATATTTTGTGTTATTCAAGGAGGAAGAAAAAATAATTGTGCTGCTAATCCAACTTTGTGGGATCATTAAGATAAAACAATTGGGTTTTAGTCTTAATTTAGTTTAATTATAATAATAAATAATTTTTTCCTTGTAATTTTAAACTTTTTGTCCACTAGTGATAGTACAGCTGGCTGTTTTTGATTCAAATCCCTCCACTTTGTGATAATTAAAAAAGAAAAAGAAAACAATGATGAAGGTAACAATAAAATAAAGAACTAAAAAGAAATTTTCCTAACCAGCACAAGTAGCAATAGCATAGATATTATTCAAAATTTTGACATGAATTGTTAGAGTTGTCATTGTATTAAAAAAATTTGTACG

Coding sequence (CDS)

ATGAACCGCCGTATAATCCCCCTTCTCTTTGCCGTTCCACAAACAGAACCGGAACCGGAATCCTCTCTCTCACCCACCGCCATGGGCTATCCCATAGGCTACGCCGACATGTTTTTCCCCAACGCCTTTCTCCATCTCCTCTTCTTCCTTGGTTACATCCGAAGCCTCATTGTTTCGCTCTTTCAATTTCTAGGGCTTTCGGATTTTCTCGAATCCAACGTCGTTTGGCCCGAAAATCCGACCTCGATCTTCTACGATCGATCCGTACCCACAATCCTCATCGAGAAATTCGTCCCCGTCGTTAAGTTCACCGACATCGTCGCCGCCGTCGAGTTTCCACCGGAGTGTTGCGCCGTTTGTCTTTGTGAGTTTCAGGACGATGATGAGGTTAGGTTTTTGAAAAACTGTAAACACATTTTTCATAAAGAATGTTTGGATCGATGGATGATTCGCGATCAGAGAAGCTGTCCTCTATGTAGAACCCTAATCGTGCCGGAGGAGTCGATTCCGCCACTAATGGATTTTTCCGACTGCACCGAGTTTTCCGGCTACTATAGCTAA

Protein sequence

MNRRIIPLLFAVPQTEPEPESSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVVWPENPTSIFYDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCAVCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDCTEFSGYYS*

Homology

[Close]

BLAST of CsGy3G008720 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.2e-37
Identity = 73/144 (50.69%), Postives = 103/144 (71.53%), Query Frame = 0


Query: 28  MGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVVWPE---NPTSIF 87
           MG+P+GY ++F P  F+  L  LG+IR+++ S+F+FLGLSDFLE +  WP+    PT I 
Sbjct: 1   MGFPVGYTEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTSYPTRIP 60

Query: 88  YDRS-VPTILIEKFVPVVKFTDIVAAVEFPPECCAVCLCEFQDDDEVRFLKNCKHIFHKE 147
             RS    +LI + +PV+KF ++  + E  PE CAVCL EF+ + E+R+L+NC+HIFH+ 
Sbjct: 61  ETRSPFSALLIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRS 120

Query: 148 CLDRWMIRDQRSCPLCRTLIVPEE 168
           CLDRWM  DQ++CPLCRT  VP+E
Sbjct: 121 CLDRWMDHDQKTCPLCRTPFVPDE 144

[Close]

BLAST of CsGy3G008720 vs. ExPASy Swiss-Prot
Match: Q9SUS5 (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.0e-22
Identity = 51/145 (35.17%), Postives = 83/145 (57.24%), Query Frame = 0


Query: 28  MGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVVWPENPTSIFYDR 87
           MG P  + ++  P   L  L+ +G+ R ++ +L  ++GL  FL+ N     +PT +    
Sbjct: 1   MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDHNETSRSDPTRLAL-- 60

Query: 88  SVPTILIEKFVPVVKFTDIVAAVEFPPECCAVCLCEFQDDDEVRFLKNCKHIFHKECLDR 147
           S    L  + +PVV+F+D++     P +CC VCL +F  DD++R L  C H+FH  CLDR
Sbjct: 61  STSATLANELIPVVRFSDLLTD---PEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDR 120

Query: 148 WMIR-DQRSCPLCRTLIVPEESIPP 172
           W++  ++ +CP+CR   +PEE   P
Sbjct: 121 WIVDCNKITCPICRNRFLPEEKSTP 140

[Close]

BLAST of CsGy3G008720 vs. ExPASy Swiss-Prot
Match: Q9SUS4 (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RHA1A PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-18
Identity = 49/142 (34.51%), Postives = 81/142 (57.04%), Query Frame = 0


Query: 28  MGYPIGY-ADMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVVWPENPTSIFYD 87
           MG P  +  ++  P+  L +L+ +G+ R ++ +L  ++GL  FL+ N      P    + 
Sbjct: 1   MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNET--SAPDLTRHA 60

Query: 88  RSVPTILIEKFVPVVKFTDIVAAVEFPPECCAVCLCEFQDDDEVRFLKNCKHIFHKECLD 147
            S    L  + +PVV+F+D+      P +CC VCL +F+ DD+VR L  C H+FH  CLD
Sbjct: 61  LSTSASLANELIPVVRFSDLPTD---PEDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLD 120

Query: 148 RWMI-RDQRSCPLCRTLIVPEE 168
           RW++  ++  CP+CR   +P+E
Sbjct: 121 RWIVDYNKMKCPVCRHRFLPKE 137

[Close]

BLAST of CsGy3G008720 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 8.0e-12
Identity = 45/150 (30.00%), Postives = 78/150 (52.00%), Query Frame = 0


Query: 21  SSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVVWPENP 80
           S +SP+ +   I  + +FF +  LHLL     +R L+    +     D+ ++        
Sbjct: 45  SKISPSILLIIIILSIIFFISGLLHLL-----VRFLLTPSSR--DREDYFDNVTALQGQL 104

Query: 81  TSIF--YDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCAVCLCEFQDDDEVRFLKNCKH 140
             +F  +D  V    I+  +PV  +  I+    +P + CAVCLCEF+ +D++R L  C H
Sbjct: 105 QQLFHLHDSGVDQSFIDT-LPVFHYKSIIGLKNYPFD-CAVCLCEFETEDKLRLLPKCSH 164

Query: 141 IFHKECLDRWMIRDQRSCPLCRTLIVPEES 169
            FH +C+D W++    +CPLCR+ ++ + S
Sbjct: 165 AFHMDCIDTWLL-SHSTCPLCRSSLLSDLS 184

[Close]

BLAST of CsGy3G008720 vs. ExPASy Swiss-Prot
Match: Q9P7E1 (Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBP4H10.07 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-11
Identity = 30/56 (53.57%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 115 ECCAVCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIP 171
           E C VCL  F+ +DE R LK C H FH+EC+D+W+   Q SCPLCRT  V   S P
Sbjct: 523 ERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCRTKGVASASTP 578

[Close]

BLAST of CsGy3G008720 vs. NCBI nr
Match: KGN56500.1 (hypothetical protein Csa_010889 [Cucumis sativus])

HSP 1 Score: 382 bits (982), Expect = 4.77e-134
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MNRRIIPLLFAVPQTEPEPESSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSL 60
           MNRRIIPLLFAVPQTEPEPESSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSL
Sbjct: 1   MNRRIIPLLFAVPQTEPEPESSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSL 60

Query: 61  FQFLGLSDFLESNVVWPENPTSIFYDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCAVC 120
           FQFLGLSDFLESNVVWPENPTSIFYDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCAVC
Sbjct: 61  FQFLGLSDFLESNVVWPENPTSIFYDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCAVC 120

Query: 121 LCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDCTE 180
           LCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDCTE
Sbjct: 121 LCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDCTE 180

Query: 181 FSGYYS 186
           FSGYYS
Sbjct: 181 FSGYYS 186

[Close]

BLAST of CsGy3G008720 vs. NCBI nr
Match: KAA0048956.1 (Zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 360 bits (924), Expect = 3.34e-125
Identity = 174/186 (93.55%), Postives = 180/186 (96.77%), Query Frame = 0


Query: 1   MNRRIIPLLFAVPQTEPEPESSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSL 60
           MNRRIIP LFAVPQTEPEPE SLSPTAMGYP+GYAD+FFPNAFLHLLFFLGYIRSLIVSL
Sbjct: 1   MNRRIIPFLFAVPQTEPEPEPSLSPTAMGYPVGYADVFFPNAFLHLLFFLGYIRSLIVSL 60

Query: 61  FQFLGLSDFLESNVVWPENPTSIFYDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCAVC 120
           FQFLGLSDFLESNVVWPENPTSIF+DRSV TILIE+FVPVVKFTDI+AAVEFPPECCAVC
Sbjct: 61  FQFLGLSDFLESNVVWPENPTSIFHDRSVSTILIEEFVPVVKFTDIIAAVEFPPECCAVC 120

Query: 121 LCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDCTE 180
           LCEF DD+EVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFS CTE
Sbjct: 121 LCEFHDDEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSGCTE 180

Query: 181 FSGYYS 186
           FSG YS
Sbjct: 181 FSGDYS 186

[Close]

BLAST of CsGy3G008720 vs. NCBI nr
Match: TYK17611.1 (Zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 360 bits (923), Expect = 4.74e-125
Identity = 173/186 (93.01%), Postives = 180/186 (96.77%), Query Frame = 0


Query: 1   MNRRIIPLLFAVPQTEPEPESSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSL 60
           MNRRIIP LFAVPQTEPEPE SLSPTAMGYP+GYAD+FFPNAFLHLLFFLGYIRSLIVSL
Sbjct: 1   MNRRIIPFLFAVPQTEPEPEPSLSPTAMGYPVGYADVFFPNAFLHLLFFLGYIRSLIVSL 60

Query: 61  FQFLGLSDFLESNVVWPENPTSIFYDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCAVC 120
           FQFLGLSDFLESNVVWPENPTSIF+DRSV TILIE+FVPVVKFTDI+AAVEFPPECCAVC
Sbjct: 61  FQFLGLSDFLESNVVWPENPTSIFHDRSVSTILIEEFVPVVKFTDIIAAVEFPPECCAVC 120

Query: 121 LCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDCTE 180
           LCEF DD+EVRFLKNCKH+FHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFS CTE
Sbjct: 121 LCEFHDDEEVRFLKNCKHVFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSGCTE 180

Query: 181 FSGYYS 186
           FSG YS
Sbjct: 181 FSGDYS 186

[Close]

BLAST of CsGy3G008720 vs. NCBI nr
Match: XP_023526936.1 (E3 ubiquitin-protein ligase RHA1B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305 bits (782), Expect = 1.58e-103
Identity = 150/188 (79.79%), Postives = 163/188 (86.70%), Query Frame = 0


Query: 1   MNRRIIPLLFAVPQTEPEPESSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSL 60
           MNRR+IP LFAVPQTEPE ESSLSPTAMGYP+GYAD+FF NAFLHLL  LGYIRSLI+SL
Sbjct: 1   MNRRVIPFLFAVPQTEPESESSLSPTAMGYPVGYADVFFSNAFLHLLVLLGYIRSLIISL 60

Query: 61  FQFLGLSDFLESNVVWPENPTSIFYDRSVPTILIEKFVPVVKFTDI--VAAVEFPPECCA 120
           F+ LGL DFLESNVVWP+NPT I  D SV  I IE+F PVVKF+DI   A   FPPECCA
Sbjct: 61  FRILGLPDFLESNVVWPQNPTPIIDDHSVLPIRIEEFFPVVKFSDIFDAAGAGFPPECCA 120

Query: 121 VCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDC 180
           VCLCEF+DD+EVRFLKNCKHIFHKECLD WMIRDQRSCPLCRTLIVPE SIPPL+DF+ C
Sbjct: 121 VCLCEFEDDEEVRFLKNCKHIFHKECLDGWMIRDQRSCPLCRTLIVPEGSIPPLVDFAGC 180

Query: 181 TEFSGYYS 186
           +EFSG YS
Sbjct: 181 SEFSGDYS 188

[Close]

BLAST of CsGy3G008720 vs. NCBI nr
Match: KAG6582623.1 (Brassinosteroid-responsive RING protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 305 bits (782), Expect = 1.58e-103
Identity = 149/188 (79.26%), Postives = 164/188 (87.23%), Query Frame = 0


Query: 1   MNRRIIPLLFAVPQTEPEPESSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSL 60
           MNRR+IP LFAVPQT+PE ESSLSPTAMGYP+GYAD+FF NAFLHLL FLGYIRSLI+SL
Sbjct: 1   MNRRVIPFLFAVPQTQPESESSLSPTAMGYPVGYADVFFSNAFLHLLVFLGYIRSLIISL 60

Query: 61  FQFLGLSDFLESNVVWPENPTSIFYDRSVPTILIEKFVPVVKFTDI--VAAVEFPPECCA 120
           ++ LGL DFLES+VVWP+NPT I  D SV  I IE+F P+VKF+DI   A   FPPECCA
Sbjct: 61  YRILGLPDFLESSVVWPQNPTPIIDDHSVLPIRIEEFFPMVKFSDIFDAAGAGFPPECCA 120

Query: 121 VCLCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDC 180
           VCLCEFQDD+EVRFLKNCKHIFHKECLD WMIRDQRSCPLCRTLIVPEESIPPL+DF  C
Sbjct: 121 VCLCEFQDDEEVRFLKNCKHIFHKECLDGWMIRDQRSCPLCRTLIVPEESIPPLVDFPGC 180

Query: 181 TEFSGYYS 186
           +EFSG YS
Sbjct: 181 SEFSGDYS 188

[Close]

BLAST of CsGy3G008720 vs. ExPASy TrEMBL
Match: A0A0A0L3J4 (Zinc finger protein OS=Cucumis sativus OX=3659 GN=Csa_3G121750 PE=4 SV=1)

HSP 1 Score: 382 bits (982), Expect = 2.31e-134
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MNRRIIPLLFAVPQTEPEPESSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSL 60
           MNRRIIPLLFAVPQTEPEPESSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSL
Sbjct: 1   MNRRIIPLLFAVPQTEPEPESSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSL 60

Query: 61  FQFLGLSDFLESNVVWPENPTSIFYDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCAVC 120
           FQFLGLSDFLESNVVWPENPTSIFYDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCAVC
Sbjct: 61  FQFLGLSDFLESNVVWPENPTSIFYDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCAVC 120

Query: 121 LCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDCTE 180
           LCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDCTE
Sbjct: 121 LCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDCTE 180

Query: 181 FSGYYS 186
           FSGYYS
Sbjct: 181 FSGYYS 186

[Close]

BLAST of CsGy3G008720 vs. ExPASy TrEMBL
Match: A0A5A7U3X1 (Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001770 PE=4 SV=1)

HSP 1 Score: 360 bits (924), Expect = 1.62e-125
Identity = 174/186 (93.55%), Postives = 180/186 (96.77%), Query Frame = 0


Query: 1   MNRRIIPLLFAVPQTEPEPESSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSL 60
           MNRRIIP LFAVPQTEPEPE SLSPTAMGYP+GYAD+FFPNAFLHLLFFLGYIRSLIVSL
Sbjct: 1   MNRRIIPFLFAVPQTEPEPEPSLSPTAMGYPVGYADVFFPNAFLHLLFFLGYIRSLIVSL 60

Query: 61  FQFLGLSDFLESNVVWPENPTSIFYDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCAVC 120
           FQFLGLSDFLESNVVWPENPTSIF+DRSV TILIE+FVPVVKFTDI+AAVEFPPECCAVC
Sbjct: 61  FQFLGLSDFLESNVVWPENPTSIFHDRSVSTILIEEFVPVVKFTDIIAAVEFPPECCAVC 120

Query: 121 LCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDCTE 180
           LCEF DD+EVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFS CTE
Sbjct: 121 LCEFHDDEEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSGCTE 180

Query: 181 FSGYYS 186
           FSG YS
Sbjct: 181 FSGDYS 186

[Close]

BLAST of CsGy3G008720 vs. ExPASy TrEMBL
Match: A0A5D3D061 (Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004810 PE=4 SV=1)

HSP 1 Score: 360 bits (923), Expect = 2.30e-125
Identity = 173/186 (93.01%), Postives = 180/186 (96.77%), Query Frame = 0


Query: 1   MNRRIIPLLFAVPQTEPEPESSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSL 60
           MNRRIIP LFAVPQTEPEPE SLSPTAMGYP+GYAD+FFPNAFLHLLFFLGYIRSLIVSL
Sbjct: 1   MNRRIIPFLFAVPQTEPEPEPSLSPTAMGYPVGYADVFFPNAFLHLLFFLGYIRSLIVSL 60

Query: 61  FQFLGLSDFLESNVVWPENPTSIFYDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCAVC 120
           FQFLGLSDFLESNVVWPENPTSIF+DRSV TILIE+FVPVVKFTDI+AAVEFPPECCAVC
Sbjct: 61  FQFLGLSDFLESNVVWPENPTSIFHDRSVSTILIEEFVPVVKFTDIIAAVEFPPECCAVC 120

Query: 121 LCEFQDDDEVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDCTE 180
           LCEF DD+EVRFLKNCKH+FHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFS CTE
Sbjct: 121 LCEFHDDEEVRFLKNCKHVFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSGCTE 180

Query: 181 FSGYYS 186
           FSG YS
Sbjct: 181 FSGDYS 186

[Close]

BLAST of CsGy3G008720 vs. ExPASy TrEMBL
Match: A0A6J1E8G9 (E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita moschata OX=3662 GN=LOC111431816 PE=4 SV=1)

HSP 1 Score: 257 bits (657), Expect = 3.34e-85
Identity = 124/161 (77.02%), Postives = 139/161 (86.34%), Query Frame = 0


Query: 28  MGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVVWPENPTSIFYDR 87
           MGYP+GYAD+FF NAFLHLL FLGYIRSLI+SL++ LGL DFLES+VVWP+NPT I  D 
Sbjct: 1   MGYPVGYADVFFSNAFLHLLVFLGYIRSLIISLYRILGLPDFLESSVVWPQNPTPIIDDH 60

Query: 88  SVPTILIEKFVPVVKFTDI--VAAVEFPPECCAVCLCEFQDDDEVRFLKNCKHIFHKECL 147
           SV  I IE+F P+VKF+DI   A   FPPECCAVCLCEFQDD+EVRFLKNCKHIFHKECL
Sbjct: 61  SVLPIRIEEFFPMVKFSDIFDAAGAGFPPECCAVCLCEFQDDEEVRFLKNCKHIFHKECL 120

Query: 148 DRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDCTEFSGYYS 186
           D WMIRDQRSCPLCRTLIVPEES+P L+DF+ C+EFSG YS
Sbjct: 121 DGWMIRDQRSCPLCRTLIVPEESMPALVDFAGCSEFSGDYS 161

[Close]

BLAST of CsGy3G008720 vs. ExPASy TrEMBL
Match: A0A6J1D2I3 (E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC111016398 PE=4 SV=1)

HSP 1 Score: 258 bits (658), Expect = 4.47e-85
Identity = 130/178 (73.03%), Postives = 149/178 (83.71%), Query Frame = 0


Query: 12  VPQTEPEPESSLSPTAMGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLE 71
           +P  EP   S +SP AMGYP+GY  +FFPNAFLHLLFFLGY+RSLIVSLF+FLGLSDFLE
Sbjct: 6   IPNREP---SVISPIAMGYPVGYGHVFFPNAFLHLLFFLGYLRSLIVSLFRFLGLSDFLE 65

Query: 72  SNVVWPENPTSIFYDRSVPT-ILIEKFVPVVKFTDIVAAVEF--PPECCAVCLCEFQDDD 131
           + VVWPE+ TSIF+DRSV + ILIE+FVPVVKF+DI   V    P E CAVCLCEF+D++
Sbjct: 66  TGVVWPESQTSIFHDRSVVSAILIEEFVPVVKFSDIATNVGIGSPTESCAVCLCEFEDEE 125

Query: 132 EVRFLKNCKHIFHKECLDRWMIRDQRSCPLCRTLIVPEESIPPLMDFSDCTEFSGYYS 186
           EVR LKNCKHIFHKECLDRWMIRDQRSCPLCRTL++P+E IP L DFS C+E SG YS
Sbjct: 126 EVRCLKNCKHIFHKECLDRWMIRDQRSCPLCRTLVLPDEFIPQLPDFSGCSELSGDYS 180

[Close]

BLAST of CsGy3G008720 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 )

HSP 1 Score: 156.0 bits (393), Expect = 3.0e-38
Identity = 73/144 (50.69%), Postives = 103/144 (71.53%), Query Frame = 0


Query: 28  MGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVVWPE---NPTSIF 87
           MG+P+GY ++F P  F+  L  LG+IR+++ S+F+FLGLSDFLE +  WP+    PT I 
Sbjct: 1   MGFPVGYTEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTSYPTRIP 60

Query: 88  YDRS-VPTILIEKFVPVVKFTDIVAAVEFPPECCAVCLCEFQDDDEVRFLKNCKHIFHKE 147
             RS    +LI + +PV+KF ++  + E  PE CAVCL EF+ + E+R+L+NC+HIFH+ 
Sbjct: 61  ETRSPFSALLIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRS 120

Query: 148 CLDRWMIRDQRSCPLCRTLIVPEE 168
           CLDRWM  DQ++CPLCRT  VP+E
Sbjct: 121 CLDRWMDHDQKTCPLCRTPFVPDE 144

[Close]

BLAST of CsGy3G008720 vs. TAIR 10
Match: AT1G63840.1 (RING/U-box superfamily protein )

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-32
Identity = 69/143 (48.25%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 28  MGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVV---WPENPTSIF 87
           MG+P+GY+++  P  F +LL FLG IR LI ++F+ +GL DFLE   V   WP+ P ++ 
Sbjct: 1   MGFPVGYSELLLPKIFFYLLSFLGLIRKLISTMFKIIGLPDFLEPEPVSTSWPDPPPTLT 60

Query: 88  YDRSVPTILIEKFVPVVKFTDIVAAVEFPPECCAVCLCEFQDDDEVRFLKNCKHIFHKEC 147
              S   IL  + +PVV+F+DI        ECCAVCL +F++DDE+R L NC+HIFH+ C
Sbjct: 61  KPDSA-AILAGEMLPVVRFSDINRP---ESECCAVCLYDFENDDEIRRLTNCRHIFHRGC 120

Query: 148 LDRWMI-RDQRSCPLCRTLIVPE 167
           LDRWM+  +Q +CPLCRT  +P+
Sbjct: 121 LDRWMMGYNQMTCPLCRTQFIPD 139

[Close]

BLAST of CsGy3G008720 vs. TAIR 10
Match: AT5G41400.1 (RING/U-box superfamily protein )

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-29
Identity = 71/158 (44.94%), Postives = 98/158 (62.03%), Query Frame = 0


Query: 28  MGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVV-----WPENP-- 87
           MGYP+GY ++  P  FLHLL  LG IR+LI + F+ LGL DFLES+ V     W E P  
Sbjct: 1   MGYPVGYTELLLPRIFLHLLSLLGLIRTLIDTGFRILGLPDFLESDPVSSSSSWLEPPYM 60

Query: 88  ---------TSIFYDRSVPTILIEKFVPVVKFTDIV-AAVEFPPECCAVCLCEFQDDDEV 147
                    +S F+   V   L  + +PV++F+++         +CCAVCL EF++DDE+
Sbjct: 61  STAAHHHQESSFFF--PVAARLAGEILPVIRFSELTRPGFGSGSDCCAVCLHEFENDDEI 120

Query: 148 RFLKNCKHIFHKECLDRWMI-RDQRSCPLCRTLIVPEE 168
           R L NC+HIFH+ CLDRWM+  +Q +CPLCRT  + +E
Sbjct: 121 RRLTNCQHIFHRSCLDRWMMGYNQMTCPLCRTPFISDE 156

[Close]

BLAST of CsGy3G008720 vs. TAIR 10
Match: AT4G11360.1 (RING-H2 finger A1B )

HSP 1 Score: 105.9 bits (263), Expect = 3.5e-23
Identity = 51/145 (35.17%), Postives = 83/145 (57.24%), Query Frame = 0


Query: 28  MGYPIGYADMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVVWPENPTSIFYDR 87
           MG P  + ++  P   L  L+ +G+ R ++ +L  ++GL  FL+ N     +PT +    
Sbjct: 1   MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDHNETSRSDPTRLAL-- 60

Query: 88  SVPTILIEKFVPVVKFTDIVAAVEFPPECCAVCLCEFQDDDEVRFLKNCKHIFHKECLDR 147
           S    L  + +PVV+F+D++     P +CC VCL +F  DD++R L  C H+FH  CLDR
Sbjct: 61  STSATLANELIPVVRFSDLLTD---PEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDR 120

Query: 148 WMIR-DQRSCPLCRTLIVPEESIPP 172
           W++  ++ +CP+CR   +PEE   P
Sbjct: 121 WIVDCNKITCPICRNRFLPEEKSTP 140

[Close]

BLAST of CsGy3G008720 vs. TAIR 10
Match: AT4G11370.1 (RING-H2 finger A1A )

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-19
Identity = 49/142 (34.51%), Postives = 81/142 (57.04%), Query Frame = 0


Query: 28  MGYPIGY-ADMFFPNAFLHLLFFLGYIRSLIVSLFQFLGLSDFLESNVVWPENPTSIFYD 87
           MG P  +  ++  P+  L +L+ +G+ R ++ +L  ++GL  FL+ N      P    + 
Sbjct: 1   MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNET--SAPDLTRHA 60

Query: 88  RSVPTILIEKFVPVVKFTDIVAAVEFPPECCAVCLCEFQDDDEVRFLKNCKHIFHKECLD 147
            S    L  + +PVV+F+D+      P +CC VCL +F+ DD+VR L  C H+FH  CLD
Sbjct: 61  LSTSASLANELIPVVRFSDLPTD---PEDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLD 120

Query: 148 RWMI-RDQRSCPLCRTLIVPEE 168
           RW++  ++  CP+CR   +P+E
Sbjct: 121 RWIVDYNKMKCPVCRHRFLPKE 137

The following BLAST results are available for this feature:

BLAST of CsGy3G008720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XF92	4.2e-37	50.69	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]
Q9SUS5	5.0e-22	35.17	E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 ...	[more]
Q9SUS4	2.0e-18	34.51	Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q940Q4	8.0e-12	30.00	RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2	[more]
Q9P7E1	1.4e-11	53.57	Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces pombe (strai...	[more]

BLAST of CsGy3G008720 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56500.1	4.77e-134	100.00	hypothetical protein Csa_010889 [Cucumis sativus]	[more]
KAA0048956.1	3.34e-125	93.55	Zinc finger protein [Cucumis melo var. makuwa]	[more]
TYK17611.1	4.74e-125	93.01	Zinc finger protein [Cucumis melo var. makuwa]	[more]
XP_023526936.1	1.58e-103	79.79	E3 ubiquitin-protein ligase RHA1B-like [Cucurbita pepo subsp. pepo]	[more]
KAG6582623.1	1.58e-103	79.26	Brassinosteroid-responsive RING protein 1, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of CsGy3G008720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3J4	2.31e-134	100.00	Zinc finger protein OS=Cucumis sativus OX=3659 GN=Csa_3G121750 PE=4 SV=1	[more]
A0A5A7U3X1	1.62e-125	93.55	Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G...	[more]
A0A5D3D061	2.30e-125	93.01	Zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G...	[more]
A0A6J1E8G9	3.34e-85	77.02	E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1D2I3	4.47e-85	73.03	E3 ubiquitin-protein ligase RHA1B-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of CsGy3G008720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61460.1	3.0e-38	50.69	brassinosteroid-responsive RING-H2	[more]
AT1G63840.1	1.4e-32	48.25	RING/U-box superfamily protein	[more]
AT5G41400.1	1.5e-29	44.94	RING/U-box superfamily protein	[more]
AT4G11360.1	3.5e-23	35.17	RING-H2 finger A1B	[more]
AT4G11370.1	1.4e-19	34.51	RING-H2 finger A1A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 117..159 e-value: 2.9E-6 score: 36.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 117..160 e-value: 1.3E-11 score: 44.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 117..160 score: 12.69582
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 98..166 e-value: 1.1E-16 score: 61.8
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 28..167
None	No IPR available	PANTHER	PTHR45969:SF10	BRH1 RING FINGER PROTEIN	coord: 28..167
None	No IPR available	CDD	cd16448	RING-H2	coord: 117..160 e-value: 2.13061E-14 score: 62.4695
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 101..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G008720.1	CsGy3G008720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0061630	ubiquitin protein ligase activity