CsGy3G007950 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G007950
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Krueppel-like factor
Location	Gy14Chr3: 6726426 .. 6728547 (+)
RNA-Seq Expression	CsGy3G007950
Synteny	CsGy3G007950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTGTAAAAATGACTAAATAATATATGTCTAAGGAGAATGCATTAGATTTTCTGTAACCCTATTTCACGACCAGCCACCCCCGCCTTCCCATTACCGGTCACTGCACCCCTTCCCGCCGTACGCCGCTGCCGCTCCACAGCATATCTTTTCCTATTTCATGTACCTGTGTCGTCTCGAACTGGTACGATTGAAGTTAGTTAGTTTTCAATTCATTTATATGATTTATATGCTATCTCAATCTTTACCATTCAACTCTATTTTTAGTTTTTGCAATCGTCCTTCTTCCTCGATTTCTTTGATTTGGGTTATCTCATCGACAATTTTTTTTCCTACTTTTCTTAGCTATCATTTACACGATGTTTTGGTTTACGCAATGGTTTGGTTTAAGTCTAAATTTTTGTTCTGCCATGGAATGACGGACTTCGATTGGAGAAAGTTCGCGAAAATTAGGGTTAAATGCTAAAGATATGTAAGCATCAAAACTGAAAAATGGGCTTGAATTCTTAGCGAAATGACTCATGATTGCCTTTTCATCCTCGCTTTACTTTTCCAGTATTGTTTTTCGATTGGTGCATTGTTCTTACTAGTAATATACTTAACCTTATTCTCTCGATAAACCTTCTCAATGCTTAAGATAAGATTATTTGAATAAATTTATAAGATATTTTCATTGGACTTTTTAGTTCGAAAGAAACAATCGAATTTTTAGGAGTGGGTGTTTTTTGTGTTGGGTGCATCTCACCTTTTTATGGCTCTATTTTGATGAGGATCATCGAACTGTAGTTATCTTCTCTTTGAGCTAGTTTAAAGTTTTTCTTATAATTCGATTCATTTAGACTAGCTGAGGCTTCCGGATCATTCTTCTTTACATATGTCATTCTTTTAGCGAATCGGGGAAAAAAGTAATTTGAACATTTTATGTGTTGTTTGGATTTGGAGGATTTAAAACGAGGAAATGAGTTCATTTTCCTAATTGCATTTGGAACCAAACTGGCTTGAAATCACCACAATTAAATCTTCTTGTTTGTGTAGCTATGGGAAATGAAAAGAAAGTGAGACATTGTACCCGAGAACTTTTATTAATAAGTCAAATATCATTTAATAAAAAACAAATCAACTAATTAAATTAAAACTCGAATGATCTACATTGTCAAAAAGAAAGAACTTACAAAAAGTCTAAAAGTTCAGAACCATTATTTTACAATTATATCTTTATAACCATATATAAACTAAACAATTGTTTGTAAATTTCTAAATCCTTTCACATCTGGTAGTTTCAAACAGAGAGTTATTTTTGCTTTAGGTTTGAAGGGCGTGAGAGTTGAGTTATAAGCAACCTAGAGATAGCTATGGGAGTAGAGCGAAACGACCCTTTGAAGGGAGTAGAGCAAAAAGACCCTTTGAAGGGAGTAGACTGGAAAGCTGTGGGTGGGGATATGCAGAAAGATCCCAGTTCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATCCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGTCATGGCATTCTATGGGGCCTGTATTGCTGGTGGAATCGGTGCTGGTATGCTGGTGGAGATCTGGATAAATGATAAAATTAAAAGTAAGTTCTGAATATAGATCTTTACATATTCAAAATCTTGTTGTAAATCGATTAATGTTCGATTTCACACTTTTACACATGGTTTTAATAACCATTGAATTTTATTTTAAAAGAGTAAAAACATGTTTAGTACTGATTTTGAATATGACGAAAGGTATTTTTAGCTAGTTTAAGCTATAAATCTTCATGCTCCTGGAAGTATCTTTTCTCACATCTCTCTTTTTTTCTGATGTGTTCTTGTAGAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAGAGTACAAGAGTAATATGAAGTTGCATTATTCAAACAGAACAAGATCGTCCAGTTGCTGGGTTTTGTTTTATTGTTAATCCTAGTTTTGGAACATGTAAGCGAACATCTTTTAATGCCTCAATGAAGCTGTACAAAAATTGGAAGCAATAATTGTAAGTTTGTTTTTTGTTTTTGTTTTTTTCAAAGCCATACTTAACCTCCAATTCAGTTATTGG

mRNA sequence

CTCTTGTAAAAATGACTAAATAATATATGTCTAAGGAGAATGCATTAGATTTTCTGTAACCCTATTTCACGACCAGCCACCCCCGCCTTCCCATTACCGGTCACTGCACCCCTTCCCGCCGTACGCCGCTGCCGCTCCACAGCATATCTTTTCCTATTTCATGTACCTGTGTCGTCTCGAACTGGTTTGAAGGGCGTGAGAGTTGAGTTATAAGCAACCTAGAGATAGCTATGGGAGTAGAGCGAAACGACCCTTTGAAGGGAGTAGAGCAAAAAGACCCTTTGAAGGGAGTAGACTGGAAAGCTGTGGGTGGGGATATGCAGAAAGATCCCAGTTCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATCCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGTCATGGCATTCTATGGGGCCTGTATTGCTGGTGGAATCGGTGCTGGTATGCTGGTGGAGATCTGGATAAATGATAAAATTAAAAAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAGAGTACAAGAGTAATATGAAGTTGCATTATTCAAACAGAACAAGATCGTCCAGTTGCTGGGTTTTGTTTTATTGTTAATCCTAGTTTTGGAACATGTAAGCGAACATCTTTTAATGCCTCAATGAAGCTGTACAAAAATTGGAAGCAATAATTGTAAGTTTGTTTTTTGTTTTTGTTTTTTTCAAAGCCATACTTAACCTCCAATTCAGTTATTGG

Coding sequence (CDS)

ATGGGAGTAGAGCGAAACGACCCTTTGAAGGGAGTAGAGCAAAAAGACCCTTTGAAGGGAGTAGACTGGAAAGCTGTGGGTGGGGATATGCAGAAAGATCCCAGTTCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATCCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGTCATGGCATTCTATGGGGCCTGTATTGCTGGTGGAATCGGTGCTGGTATGCTGGTGGAGATCTGGATAAATGATAAAATTAAAAAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAG

Protein sequence

MGVERNDPLKGVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK*

Homology

[Close]

BLAST of CsGy3G007950 vs. NCBI nr
Match: XP_004133805.1 (uncharacterized protein LOC101207877 [Cucumis sativus] >KGN56411.1 hypothetical protein Csa_009724 [Cucumis sativus])

HSP 1 Score: 218 bits (555), Expect = 1.26e-71
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MGVERNDPLKGVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60
           MGVE+NDPLKGVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR
Sbjct: 1   MGVEQNDPLKGVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60

Query: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103
           SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK
Sbjct: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of CsGy3G007950 vs. NCBI nr
Match: XP_008437869.1 (PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo] >KAA0048876.1 uncharacterized protein E6C27_scaffold171G00910 [Cucumis melo var. makuwa] >TYK20827.1 uncharacterized protein E5676_scaffold291G00890 [Cucumis melo var. makuwa])

HSP 1 Score: 211 bits (537), Expect = 7.01e-69
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MGVERNDPLKGVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60
           MGVE+NDPLKGVEQKDP KGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR
Sbjct: 1   MGVEQNDPLKGVEQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60

Query: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103
            LP VMAFYGACIAGGIGAGMLVE+WINDKIKKDGGVIWEFDK
Sbjct: 61  PLPYVMAFYGACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of CsGy3G007950 vs. NCBI nr
Match: XP_023522177.1 (uncharacterized protein LOC111786056 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184 bits (466), Expect = 3.60e-58
Identity = 82/91 (90.11%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 13  EQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGAC 72
           E KDP KGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSLPSV+AFYGAC
Sbjct: 4   EAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGAC 63

Query: 73  IAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103
           IAGGIGAGMLVEIWINDK+KKDGGV+WEFDK
Sbjct: 64  IAGGIGAGMLVEIWINDKVKKDGGVVWEFDK 94

[Close]

BLAST of CsGy3G007950 vs. NCBI nr
Match: XP_022942020.1 (uncharacterized protein LOC111447184 [Cucurbita moschata] >KAG6597065.1 hypothetical protein SDJN03_10245, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028536.1 hypothetical protein SDJN02_09717 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181 bits (460), Expect = 2.96e-57
Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 13  EQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGAC 72
           E KDP KGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSLPSV+AFYGAC
Sbjct: 4   EAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGAC 63

Query: 73  IAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103
           IAGGIGAGMLVEIWI DK+KKDGGV+WEFDK
Sbjct: 64  IAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94

[Close]

BLAST of CsGy3G007950 vs. NCBI nr
Match: XP_022975548.1 (uncharacterized protein LOC111475080 [Cucurbita maxima])

HSP 1 Score: 178 bits (452), Expect = 4.92e-56
Identity = 80/91 (87.91%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 13  EQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGAC 72
           E KDP KGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSL SV+AFYGAC
Sbjct: 4   EAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLSSVLAFYGAC 63

Query: 73  IAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103
           IAGGIGAGMLVEIWI DK+KKDGGV+WEFDK
Sbjct: 64  IAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94

[Close]

BLAST of CsGy3G007950 vs. ExPASy TrEMBL
Match: A0A0A0L8I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119440 PE=4 SV=1)

HSP 1 Score: 218 bits (555), Expect = 6.09e-72
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MGVERNDPLKGVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60
           MGVE+NDPLKGVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR
Sbjct: 1   MGVEQNDPLKGVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60

Query: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103
           SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK
Sbjct: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of CsGy3G007950 vs. ExPASy TrEMBL
Match: A0A5D3DB39 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00890 PE=4 SV=1)

HSP 1 Score: 211 bits (537), Expect = 3.40e-69
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MGVERNDPLKGVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60
           MGVE+NDPLKGVEQKDP KGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR
Sbjct: 1   MGVEQNDPLKGVEQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60

Query: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103
            LP VMAFYGACIAGGIGAGMLVE+WINDKIKKDGGVIWEFDK
Sbjct: 61  PLPYVMAFYGACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of CsGy3G007950 vs. ExPASy TrEMBL
Match: A0A1S3AV52 (uncharacterized protein LOC103483172 OS=Cucumis melo OX=3656 GN=LOC103483172 PE=4 SV=1)

HSP 1 Score: 211 bits (537), Expect = 3.40e-69
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MGVERNDPLKGVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60
           MGVE+NDPLKGVEQKDP KGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR
Sbjct: 1   MGVEQNDPLKGVEQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60

Query: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103
            LP VMAFYGACIAGGIGAGMLVE+WINDKIKKDGGVIWEFDK
Sbjct: 61  PLPYVMAFYGACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of CsGy3G007950 vs. ExPASy TrEMBL
Match: A0A6J1FVE8 (uncharacterized protein LOC111447184 OS=Cucurbita moschata OX=3662 GN=LOC111447184 PE=4 SV=1)

HSP 1 Score: 181 bits (460), Expect = 1.43e-57
Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 13  EQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGAC 72
           E KDP KGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSLPSV+AFYGAC
Sbjct: 4   EAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGAC 63

Query: 73  IAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103
           IAGGIGAGMLVEIWI DK+KKDGGV+WEFDK
Sbjct: 64  IAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94

[Close]

BLAST of CsGy3G007950 vs. ExPASy TrEMBL
Match: A0A6J1IJJ2 (uncharacterized protein LOC111475080 OS=Cucurbita maxima OX=3661 GN=LOC111475080 PE=4 SV=1)

HSP 1 Score: 178 bits (452), Expect = 2.38e-56
Identity = 80/91 (87.91%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 13  EQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGAC 72
           E KDP KGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSL SV+AFYGAC
Sbjct: 4   EAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLSSVLAFYGAC 63

Query: 73  IAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103
           IAGGIGAGMLVEIWI DK+KKDGGV+WEFDK
Sbjct: 64  IAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94

[Close]

BLAST of CsGy3G007950 vs. TAIR 10
Match: AT5G16950.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 91.7 bits (226), Expect = 3.8e-19
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 15  KDPLKGVDWKAVGGDMQKDPSSTNI-----IKKRRPTKIRQIPDYYFLPRRSLPSVMAFY 74
           KDP KG +W     +  K P+++ +      +K+ P  +    + YFLPR+  P  +A+Y
Sbjct: 7   KDPWKGEEW-GTENEKTKKPTTSGVKTVTRARKQIPRGLEDKYEAYFLPRKPWPRALAYY 66

Query: 75  GACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 104
           G+ I GGIGAGM++E WIN K+K+DGGVIWEFDK
Sbjct: 67  GSFILGGIGAGMVIEAWINKKVKEDGGVIWEFDK 99

The following BLAST results are available for this feature:

BLAST of CsGy3G007950 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G007950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004133805.1	1.26e-71	99.03	uncharacterized protein LOC101207877 [Cucumis sativus] >KGN56411.1 hypothetical ...	[more]
XP_008437869.1	7.01e-69	95.15	PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo] >KAA0048876.1 unc...	[more]
XP_023522177.1	3.60e-58	90.11	uncharacterized protein LOC111786056 [Cucurbita pepo subsp. pepo]	[more]
XP_022942020.1	2.96e-57	89.01	uncharacterized protein LOC111447184 [Cucurbita moschata] >KAG6597065.1 hypothet...	[more]
XP_022975548.1	4.92e-56	87.91	uncharacterized protein LOC111475080 [Cucurbita maxima]	[more]

BLAST of CsGy3G007950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8I7	6.09e-72	99.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119440 PE=4 SV=1	[more]
A0A5D3DB39	3.40e-69	95.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AV52	3.40e-69	95.15	uncharacterized protein LOC103483172 OS=Cucumis melo OX=3656 GN=LOC103483172 PE=...	[more]
A0A6J1FVE8	1.43e-57	89.01	uncharacterized protein LOC111447184 OS=Cucurbita moschata OX=3662 GN=LOC1114471...	[more]
A0A6J1IJJ2	2.38e-56	87.91	uncharacterized protein LOC111475080 OS=Cucurbita maxima OX=3661 GN=LOC111475080...	[more]

BLAST of CsGy3G007950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16950.1	3.8e-19	45.74	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36797	OS01G0258600 PROTEIN	coord: 13..103
None	No IPR available	PANTHER	PTHR36797:SF3	OS01G0258600 PROTEIN	coord: 13..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G007950.2	CsGy3G007950.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane