CsGy3G007070 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G007070
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Gag-pol fusion protein
Location	Gy14Chr3: 6181172 .. 6181498 (+)
RNA-Seq Expression	CsGy3G007070
Synteny	CsGy3G007070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGCTCTTCCGCAAGAAGAAGAGTTTGAAGATGTCTACCTCAAAGAGCACTAGTAAAATGCCTAAGCATCACTTGGTCGCATGGCTTCCAAATTCATATCTCATAACTTTGAACAAAGTCCACTCAGCTTACTCACATGGGTCCCAATGTGTCATGTCGCCTACCTTCTCGTGTGGCCCTTACTCTCGTGCCTTGCCTTGGCCGCATTTTGTAGCTCGCCCAACATATCTTCCTCAGTTAGCCAAGCCTCAACTTCCTTACTTAACTATGCCTTTGCCACCCAACTTTTCATCTCGCTTAGCACACCATCAAAATGTCTAG

mRNA sequence

ATGGAAAAGCTCTTCCGCAAGAAGAAGAGTTTGAAGATGTCTACCTCAAAGAGCACTAGTAAAATGCCTAAGCATCACTTGGTCGCATGGCTTCCAAATTCATATCTCATAACTTTGAACAAAGTCCACTCAGCTTACTCACATGGGTCCCAATGTGTCATGTCGCCTACCTTCTCGTGTGGCCCTTACTCTCGTGCCTTGCCTTGGCCGCATTTTGTAGCTCGCCCAACATATCTTCCTCAGTTAGCCAAGCCTCAACTTCCTTACTTAACTATGCCTTTGCCACCCAACTTTTCATCTCGCTTAGCACACCATCAAAATGTCTAG

Coding sequence (CDS)

ATGGAAAAGCTCTTCCGCAAGAAGAAGAGTTTGAAGATGTCTACCTCAAAGAGCACTAGTAAAATGCCTAAGCATCACTTGGTCGCATGGCTTCCAAATTCATATCTCATAACTTTGAACAAAGTCCACTCAGCTTACTCACATGGGTCCCAATGTGTCATGTCGCCTACCTTCTCGTGTGGCCCTTACTCTCGTGCCTTGCCTTGGCCGCATTTTGTAGCTCGCCCAACATATCTTCCTCAGTTAGCCAAGCCTCAACTTCCTTACTTAACTATGCCTTTGCCACCCAACTTTTCATCTCGCTTAGCACACCATCAAAATGTCTAG

Protein sequence

MEKLFRKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSCGPYSRALPWPHFVARPTYLPQLAKPQLPYLTMPLPPNFSSRLAHHQNV*

Homology

[Close]

BLAST of CsGy3G007070 vs. NCBI nr
Match: KGN56322.1 (hypothetical protein Csa_010482 [Cucumis sativus])

HSP 1 Score: 223 bits (568), Expect = 1.89e-73
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MEKLFRKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC 60
           MEKLFRKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC
Sbjct: 1   MEKLFRKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC 60

Query: 61  GPYSRALPWPHFVARPTYLPQLAKPQLPYLTMPLPPNFSSRLAHHQNV 108
           GPYSRALPWPHFVARPTYLPQLAKPQLPYLTMPLPPNFSSRLAHHQNV
Sbjct: 61  GPYSRALPWPHFVARPTYLPQLAKPQLPYLTMPLPPNFSSRLAHHQNV 108

[Close]

BLAST of CsGy3G007070 vs. NCBI nr
Match: KAA0068098.1 (hypothetical protein E6C27_scaffold238G00560 [Cucumis melo var. makuwa] >TYK26080.1 hypothetical protein E5676_scaffold1185G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 5.28e-08
Identity = 34/77 (44.16%), Postives = 38/77 (49.35%), Query Frame = 0


Query: 14  STSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSCGPYSRALPWPHFV 73
           ST  ST KMPK HL+AW P S  I  N  H AY HG QC+M  +F C             
Sbjct: 40  STPLSTFKMPKGHLIAWHPTSKYIAFNITHLAYLHGPQCIMPLSFGC----------MVA 99

Query: 74  ARPTYLPQLAKPQLPYL 90
             PT+L  L  P LP L
Sbjct: 100 VHPTHLHCLIMPWLPNL 106

[Close]

BLAST of CsGy3G007070 vs. NCBI nr
Match: KAA0042310.1 (gag-pol fusion protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 1.02e-05
Identity = 25/42 (59.52%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 15  TSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSP 56
           T+KS +KM  HHLVAW PN   I LN  HSA SH SQC++ P
Sbjct: 122 TTKSITKMLMHHLVAWFPNLLRIALNGSHSASSHVSQCIIPP 163

[Close]

BLAST of CsGy3G007070 vs. NCBI nr
Match: TYK27665.1 (uncharacterized protein E5676_scaffold93G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 51.2 bits (121), Expect = 6.67e-05
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 15  TSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSP 56
           T+KS +KM  HHLVAW PN   I LN  HSA SH S+C++ P
Sbjct: 145 TTKSFTKMLMHHLVAWFPNLLRIALNGSHSASSHVSRCIIPP 186

[Close]

BLAST of CsGy3G007070 vs. ExPASy TrEMBL
Match: A0A0A0L6V7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115110 PE=4 SV=1)

HSP 1 Score: 223 bits (568), Expect = 9.14e-74
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MEKLFRKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC 60
           MEKLFRKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC
Sbjct: 1   MEKLFRKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC 60

Query: 61  GPYSRALPWPHFVARPTYLPQLAKPQLPYLTMPLPPNFSSRLAHHQNV 108
           GPYSRALPWPHFVARPTYLPQLAKPQLPYLTMPLPPNFSSRLAHHQNV
Sbjct: 61  GPYSRALPWPHFVARPTYLPQLAKPQLPYLTMPLPPNFSSRLAHHQNV 108

[Close]

BLAST of CsGy3G007070 vs. ExPASy TrEMBL
Match: A0A5A7VJU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00430 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.56e-08
Identity = 34/77 (44.16%), Postives = 38/77 (49.35%), Query Frame = 0


Query: 14  STSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSCGPYSRALPWPHFV 73
           ST  ST KMPK HL+AW P S  I  N  H AY HG QC+M  +F C             
Sbjct: 40  STPLSTFKMPKGHLIAWHPTSKYIAFNITHLAYLHGPQCIMPLSFGC----------MVA 99

Query: 74  ARPTYLPQLAKPQLPYL 90
             PT+L  L  P LP L
Sbjct: 100 VHPTHLHCLIMPWLPNL 106

[Close]

BLAST of CsGy3G007070 vs. ExPASy TrEMBL
Match: A0A5A7TG48 (Gag-pol fusion protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G001070 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.93e-06
Identity = 25/42 (59.52%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 15  TSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSP 56
           T+KS +KM  HHLVAW PN   I LN  HSA SH SQC++ P
Sbjct: 122 TTKSITKMLMHHLVAWFPNLLRIALNGSHSASSHVSQCIIPP 163

[Close]

BLAST of CsGy3G007070 vs. ExPASy TrEMBL
Match: A0A5D3DWI1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold93G00290 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 3.23e-05
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 15  TSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSP 56
           T+KS +KM  HHLVAW PN   I LN  HSA SH S+C++ P
Sbjct: 145 TTKSFTKMLMHHLVAWFPNLLRIALNGSHSASSHVSRCIIPP 186

The following BLAST results are available for this feature:

BLAST of CsGy3G007070 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G007070 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56322.1	1.89e-73	100.00	hypothetical protein Csa_010482 [Cucumis sativus]	[more]
KAA0068098.1	5.28e-08	44.16	hypothetical protein E6C27_scaffold238G00560 [Cucumis melo var. makuwa] >TYK2608...	[more]
KAA0042310.1	1.02e-05	59.52	gag-pol fusion protein [Cucumis melo var. makuwa]	[more]
TYK27665.1	6.67e-05	57.14	uncharacterized protein E5676_scaffold93G00290 [Cucumis melo var. makuwa]	[more]

BLAST of CsGy3G007070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6V7	9.14e-74	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115110 PE=4 SV=1	[more]
A0A5A7VJU1	2.56e-08	44.16	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TG48	4.93e-06	59.52	Gag-pol fusion protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8...	[more]
A0A5D3DWI1	3.23e-05	57.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsGy3G007070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G007070.2	CsGy3G007070.2	mRNA