CsGy3G004580 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G004580
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Serine/arginine-rich splicing factor RS40-like isoform X1
Location	Gy14Chr3: 3673783 .. 3685236 (-)
RNA-Seq Expression	CsGy3G004580
Synteny	CsGy3G004580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCGATTTTTTGTGGAAACTTCGAGTATGATGCTCGCCAGCCTGATTTGGAAAGGCTGTTTAGTCGATACGGAAAAGTTGATAGAGTAGATATGAAATCTGGTGAGCTTCTATCTGTAGCATTTTTTTTTGTGTGTTTGGATTCCTTTTTTATTTTTGATGAGAAATTTATCAGACATATATTAGAAACACAACATAGGACGTTTGTGTTATGATTTGTGAATTCATTTTAAAGTTTGTATAATTTGTATCATGTTGTTACGAGCCACTTGCAAATTTTGAATCTATGCGATATACTGAACTGGCGAAGTTACTCACGATCCACCAAGAAACTGTTGGATACAACGTTGGCAAGGCAATTCAACTGTTGGTAATTCCCCCAAAGTAGAGGTTGTTCTCATCGCATTTGGTGCCTTGCAGTACGATTCTGCATCATCCAGCATATGAAAAAACCGTAGAACCTGAATTTTGTTGGATTTTTGATGGGGGGTTCTAAAAAATTATTTGAGAAAAAAAAAAGGATGTTTTTTAAATCCTAAACCACCTTGGCCAGAATTTTCTTTGGTGCAGGATTTTCTTCGCATATTTCATAATCCTCTTGGATAAAGATGGCTCTTCAGAATTGAGTGTTCCGCCTAGGACAAGCTTTGTCTTGTTTCCAAGAAGATTCATAGCGATCCTCAAATGGCACCGCCATCTTACATTTTCCTCCGACACTTTGCTTTCCAGTTTCCATTCCTCATGACTTTTGCATGCCTACAATCCATACATTTTTTCAAGGTTGAAACATTGTCAACCTCAGCTGAGGCTGCAGAATATTCGAGAAGGCACTTTCTATTTGTAGACCTACCATGAGACATCCTGTTTTGGATTATTGCTCCTTGACATCACTTAGTTCATACACAAGGTCTGTTGCTTAATTCACTGATAACTTAGTTTATAGATTTCACGAAGGTTGCGAATATTTCTTTCTTATGGTAAGATTTTGTGTTTTGTTGAATATTATTAGAGAGAAAATTAATAGTTCATTTCGAGGAATTCCTTAATTTCGTGTCTCACAGATACCATAATTATATATTTTTTGTTCTGTTTGATTGGTTTACAGGTTTTGCTTTTATTTATATGGAGGATGAGAGAGATGCTGAGGATGCCATTCGTGCACTTGATCGGCGAGAATTTGGTCGAAAGGGTCGTAGACTACGTGTTGAGTGGACCAAAGTAATATACTTTGATATTCTGTAACTCCCAATGGACTTTTAACTTTCAATCCCTTTGTGGAAATTTTATTTGATTGTAGTTACTGTAACTTCAAAATGTTCCTCGATCAATCATTCTTTTGCTTTGTAGCAAGAACGTGGGATTAGAAGACCAGGTCCAGGTGGAGGTGGTGGTGGTGGTGGAGGTGGAGGAGGAGGAGGTTCGAGGAGATCCTCGACTAATACAAGACCTTCAAAGACTTTGTTTGTTATCAACTTTGACCCATATCATACTAGGACAAGGGATTTAGAGAGGCACTTTGATCCTTATGGTAAGATATTGAGTGTAAGGATTCGAAGAAATTTTGCATTTGTCCAGTATGAATTGCAGGAGGATGCCACTAGAGCATTGGAGCTGACAAACATGAGGTGAGTGTGAGCTTTTCTTTGTTGAATTGAATAAAAAATTAATGCTGTGTAGTAGGGTCATTTATTGAAGGTTGATTAATTAATCTCCCTTTGCCCCTGACGCACTGAGACCATCTGAAGGAAAATGTACATTGTTATTTGCTCTTGTTTATTATAGGCCATTATGTACTTGATCAGTTATTGTTATGCCTTGAACTATTATTATTGTTTACAGCAAATTGATGGATCGAGTGATTTCAGTGGAATATGCTGTTAGAGATGATGATGATAAGAGAAATGGATATAGTCCTGATAGGAATCGTGATAGGTCTCCCGATAGAAAAAGGCGATCCTCAAGTCCCTATAGAAGAGAGCGAGGAAGCCCTGATTACGGAAATGGTATTAGCCGCAGTCCATATAGGAGACAAAGAGCTAGTCCTGATTATGGTAGCCGTCGTAGTCCAAGTCCTTACCAGAGAGAGAGGGAGAGGGGTTCTCCTGATTATGGTCGAGGTCGTAGTCCCAATCATAGTCCTTATAGGAGGGAGAGAGAGAGATCAAGCGACCATGTTAGGACTCCCAGCCATAGACCTTCCCATCAGAGGGAAAGACCAAATGATGACCGAGTCCCCAACCGAAGTCCTAGTCCTTATGGGAGAGGGAGGGAGAAGGGGAGTCCTGATGGACGTGGTACTAGCTACAGTCCTCGTGATAGAGAGAGGTCGTCAAACCCTGACAATGGTCATGATCATGGCCATGATCAGCAGCAGACCACGATACCTGAACCTGGTGAGAGCCCCAATTATGGTGGCACCCAGAGCCCGAAGCGTCGGGGATATGGCAGGTTTGCACATTGAATCCGTTTTATTATTATTACTATTGGTTTTTCTTACAATTACAATTTATCTCGTTTGTGTTGTATGGTGTGTTGCAGCCGTTCACCTCAAGCAGAGGAATGA

mRNA sequence

ATGAAGCCGATTTTTTGTGGAAACTTCGAGTATGATGCTCGCCAGCCTGATTTGGAAAGGCTGTTTAGTCGATACGGAAAAGTTGATAGAGTAGATATGAAATCTGGTTTTGCTTTTATTTATATGGAGGATGAGAGAGATGCTGAGGATGCCATTCGTGCACTTGATCGGCGAGAATTTGGTCGAAAGGGTCGTAGACTACGTGTTGAGTGGACCAAACAAGAACGTGGGATTAGAAGACCAGGTCCAGGTGGAGGTGGTGGTGGTGGTGGAGGTGGAGGAGGAGGAGGTTCGAGGAGATCCTCGACTAATACAAGACCTTCAAAGACTTTGTTTGTTATCAACTTTGACCCATATCATACTAGGACAAGGGATTTAGAGAGGCACTTTGATCCTTATGGTAAGATATTGAGTGTAAGGATTCGAAGAAATTTTGCATTTGTCCAGTATGAATTGCAGGAGGATGCCACTAGAGCATTGGAGCTGACAAACATGAGCAAATTGATGGATCGAGTGATTTCAGTGGAATATGCTGTTAGAGATGATGATGATAAGAGAAATGGATATAGTCCTGATAGGAATCGTGATAGGTCTCCCGATAGAAAAAGGCGATCCTCAAGTCCCTATAGAAGAGAGCGAGGAAGCCCTGATTACGGAAATGGTATTAGCCGCAGTCCATATAGGAGACAAAGAGCTAGTCCTGATTATGGTAGCCGTCGTAGTCCAAGTCCTTACCAGAGAGAGAGGGAGAGGGGTTCTCCTGATTATGGTCGAGGTCGTAGTCCCAATCATAGTCCTTATAGGAGGGAGAGAGAGAGATCAAGCGACCATGTTAGGACTCCCAGCCATAGACCTTCCCATCAGAGGGAAAGACCAAATGATGACCGAGTCCCCAACCGAAGTCCTAGTCCTTATGGGAGAGGGAGGGAGAAGGGGAGTCCTGATGGACGTGGTACTAGCTACAGTCCTCGTGATAGAGAGAGGTCGTCAAACCCTGACAATGGTCATGATCATGGCCATGATCAGCAGCAGACCACGATACCTGAACCTGGTGAGAGCCCCAATTATGGTGGCACCCAGAGCCCGAAGCGTCGGGGATATGGCAGCCGTTCACCTCAAGCAGAGGAATGA

Coding sequence (CDS)

ATGAAGCCGATTTTTTGTGGAAACTTCGAGTATGATGCTCGCCAGCCTGATTTGGAAAGGCTGTTTAGTCGATACGGAAAAGTTGATAGAGTAGATATGAAATCTGGTTTTGCTTTTATTTATATGGAGGATGAGAGAGATGCTGAGGATGCCATTCGTGCACTTGATCGGCGAGAATTTGGTCGAAAGGGTCGTAGACTACGTGTTGAGTGGACCAAACAAGAACGTGGGATTAGAAGACCAGGTCCAGGTGGAGGTGGTGGTGGTGGTGGAGGTGGAGGAGGAGGAGGTTCGAGGAGATCCTCGACTAATACAAGACCTTCAAAGACTTTGTTTGTTATCAACTTTGACCCATATCATACTAGGACAAGGGATTTAGAGAGGCACTTTGATCCTTATGGTAAGATATTGAGTGTAAGGATTCGAAGAAATTTTGCATTTGTCCAGTATGAATTGCAGGAGGATGCCACTAGAGCATTGGAGCTGACAAACATGAGCAAATTGATGGATCGAGTGATTTCAGTGGAATATGCTGTTAGAGATGATGATGATAAGAGAAATGGATATAGTCCTGATAGGAATCGTGATAGGTCTCCCGATAGAAAAAGGCGATCCTCAAGTCCCTATAGAAGAGAGCGAGGAAGCCCTGATTACGGAAATGGTATTAGCCGCAGTCCATATAGGAGACAAAGAGCTAGTCCTGATTATGGTAGCCGTCGTAGTCCAAGTCCTTACCAGAGAGAGAGGGAGAGGGGTTCTCCTGATTATGGTCGAGGTCGTAGTCCCAATCATAGTCCTTATAGGAGGGAGAGAGAGAGATCAAGCGACCATGTTAGGACTCCCAGCCATAGACCTTCCCATCAGAGGGAAAGACCAAATGATGACCGAGTCCCCAACCGAAGTCCTAGTCCTTATGGGAGAGGGAGGGAGAAGGGGAGTCCTGATGGACGTGGTACTAGCTACAGTCCTCGTGATAGAGAGAGGTCGTCAAACCCTGACAATGGTCATGATCATGGCCATGATCAGCAGCAGACCACGATACCTGAACCTGGTGAGAGCCCCAATTATGGTGGCACCCAGAGCCCGAAGCGTCGGGGATATGGCAGCCGTTCACCTCAAGCAGAGGAATGA

Protein sequence

MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRTPSHRPSHQRERPNDDRVPNRSPSPYGRGREKGSPDGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESPNYGGTQSPKRRGYGSRSPQAEE*

Homology

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BLAST of CsGy3G004580 vs. ExPASy Swiss-Prot
Match: P92965 (Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS40 PE=1 SV=2)

HSP 1 Score: 379.4 bits (973), Expect = 4.7e-104
Identity = 229/377 (60.74%), Postives = 273/377 (72.41%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDERDAEDAIRALDR EF
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120
           GRKGRRLRVEWTK ER            GG    GGGSRRSS++ RPSKTLFVINFD  +
Sbjct: 61  GRKGRRLRVEWTKSER------------GGDKRSGGGSRRSSSSMRPSKTLFVINFDADN 120

Query: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180
           TRTRDLE+HF+PYGKI++VRIRRNFAF+QYE QEDATRAL+ +N SKLMD+VISVEYAV+
Sbjct: 121 TRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVK 180

Query: 181 DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISR-SPYRRQRASPDYGSR 240
           DDD + NG+SP+R RDRSP+R+RRS SPY+RERGSPDYG G S  + YR++R SPDYG R
Sbjct: 181 DDDARGNGHSPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRR 240

Query: 241 RSPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRTPSHRPSHQRERPNDDRVPN 300
           RSPSPY++ R RGSP+YGR R  N SP RRER  S       S  P+++RER + +  P 
Sbjct: 241 RSPSPYKKSR-RGSPEYGRDRRGNDSPRRRERVASPTKY---SRSPNNKRERMSPNHSPF 300

Query: 301 RSPSPYGRGREKGSPDGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESPNYGGT 360
           +  SP     E  SP  R      R+R RSS P+N    G  +   +I        Y G 
Sbjct: 301 KKESPRNGVGEVESPIER------RERSRSS-PEN----GQVESPGSIGRRDSDGGYDGA 350

Query: 361 QSPKRRGYGSRSPQAEE 377
           +SP ++    RSP A+E
Sbjct: 361 ESPMQKSRSPRSPPADE 350

[Close]

BLAST of CsGy3G004580 vs. ExPASy Swiss-Prot
Match: P92966 (Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS41 PE=1 SV=2)

HSP 1 Score: 368.2 bits (944), Expect = 1.1e-100
Identity = 229/382 (59.95%), Postives = 262/382 (68.59%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDERDAEDAIRALDR E+
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120
           GR GRRLRVEWTK +R             GG G  GGSRRSS+  RPSKTLFVINFD  +
Sbjct: 61  GRTGRRLRVEWTKNDR-------------GGAGRSGGSRRSSSGLRPSKTLFVINFDAQN 120

Query: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180
           TRTRDLERHF+PYGKI++VRIRRNFAF+QYE QEDATRAL+ TN SKLMD+VISVEYAV+
Sbjct: 121 TRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVK 180

Query: 181 DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYG-SR 240
           DDD + NGYSP+R RDRSPDR+RRS SPYRRERGSPDYG G S   ++R+R SPDYG  R
Sbjct: 181 DDDSRGNGYSPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGR 240

Query: 241 RSPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDH--VRTPSHRPSHQRER---PND 300
           RSPSPY+R R   SPDY R         RRER  S ++  VR  S R      R   P +
Sbjct: 241 RSPSPYKRARL--SPDYKR------DDRRRERVASPENGAVRNRSPRKGRGESRSPPPYE 300

Query: 301 DRVPNRSPSPYGRGREKGSPDGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESP 360
            R  +RSP PY + RE  SP      Y  R     S   +  ++G  +    I E     
Sbjct: 301 KRRESRSPPPYEKRRESRSP----PPYEKRRERSRSRSKSSPENGQVESPGQIMEVEAGR 356

Query: 361 NYGGTQSPKRRGYGSRSPQAEE 377
            Y G  SP R    SRSP AEE
Sbjct: 361 GYDGADSPIRES-PSRSPPAEE 356

[Close]

BLAST of CsGy3G004580 vs. ExPASy Swiss-Prot
Match: P92964 (Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS31 PE=1 SV=2)

HSP 1 Score: 265.8 bits (678), Expect = 7.6e-70
Identity = 162/307 (52.77%), Postives = 200/307 (65.15%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60
           M+P+F GNFEY+ RQ DLERLF +YG+VDRVDMKSG+AF+Y EDERDAEDAIR LD   F
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120
           G + RRL VEW K ERG  R                G  ++ +N +P+KTLFVINFDP  
Sbjct: 61  GYEKRRLSVEWAKGERGRPR----------------GDAKAPSNLKPTKTLFVINFDPIR 120

Query: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180
           T+  D+E+HF+PYGK+ +VRIRRNF+FVQ+E QEDAT+ALE T  SK++DRV+SVEYA++
Sbjct: 121 TKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALK 180

Query: 181 DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240
           DDD++      DRN  RSP   RRS SP  R R SPDYG     SP + +R SPDYG  R
Sbjct: 181 DDDER-----DDRNGGRSP---RRSLSPVYRRRPSPDYGR--RPSPGQGRRPSPDYGRAR 240

Query: 241 SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRTPSHRPSHQRERPNDDRVPNR 300
           SP   + +R +G   Y R RSP++        RSSD+ R  S         P  DR  +R
Sbjct: 241 SP---EYDRYKGPAAYERRRSPDYG------RRSSDYGRQRS---------PGYDRYRSR 263

Query: 301 SPSPYGR 308
           SP P GR
Sbjct: 301 SPVPRGR 263

[Close]

BLAST of CsGy3G004580 vs. ExPASy Swiss-Prot
Match: Q9ZPX8 (Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS31A PE=1 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 8.4e-61
Identity = 141/264 (53.41%), Postives = 178/264 (67.42%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60
           M+ ++ GNF+YD R  DLERLFS++G+V RVDMKSG+AF+Y EDERDAEDAIR  D   F
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60

Query: 61  GRKGRRLRVEWTKQERGIR-RPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPY 120
           G   R+L VEW K  +G R +P  G               ++ +N RP+KTLFVINFDP 
Sbjct: 61  GYGRRKLSVEWAKDFQGERGKPRDG---------------KAVSNQRPTKTLFVINFDPI 120

Query: 121 HTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAV 180
            TR RD+ERHF+PYGK+L+VR+RRNFAFVQ+  QEDAT+AL+ T+ SKL+D+V+SVEYA+
Sbjct: 121 RTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYAL 180

Query: 181 RDDDDKRNGYSPD-RNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGS 240
           R+  ++ + Y+   R R  SP  +RR S  Y R R SP+Y      +PY R R SPDYG 
Sbjct: 181 REAGEREDRYAGSRRRRSPSPVYRRRPSPDYTRRR-SPEYDRYKGPAPYER-RKSPDYG- 240

Query: 241 RRSPSPYQRERERGSPDYGRGRSP 263
            R  S Y R R R SP Y R RSP
Sbjct: 241 -RRSSDYGRARAR-SPGYDRSRSP 244

[Close]

BLAST of CsGy3G004580 vs. ExPASy Swiss-Prot
Match: Q7SXP4 (Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-18
Identity = 89/243 (36.63%), Postives = 122/243 (50.21%), Query Frame = 0


Query: 4   IFCGNFEYDARQPDLERLFSRYGKVDRVDMKS-----GFAFIYMEDERDAEDAIRALDRR 63
           I+ GN   D R  D+E +F +YG +  +D+K+      FAF+  ED RDAEDA+ A D  
Sbjct: 17  IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76

Query: 64  EFGRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGS----RRSSTNTRPSKTLFVI 123
           ++   G RLRVE+ +  RG+ R G GGGGGGGGGGGGGG      R    +R S+   ++
Sbjct: 77  DY--DGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIV 136

Query: 124 NFDPYHTRTRDLERHFDPYGKILSVRI-RRNFAFVQYELQEDATRALELTNMSKLMDRVI 183
           +  P     +DL+ H    G +    + R     V++  +ED T A+   + +K      
Sbjct: 137 SGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 196

Query: 184 SVEY-AVRDDDDKRNGYSPDRNRDRSPDRKR-------RSSSPYRRERGSPDYGNGISRS 229
              Y  V+ D  +   Y   R+R RS  R R       RS SP RR RGSP Y    SRS
Sbjct: 197 ETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNNRSRSYSP-RRSRGSPQYSPRHSRS 256

[Close]

BLAST of CsGy3G004580 vs. NCBI nr
Match: XP_004149583.1 (serine/arginine-rich splicing factor RS40 isoform X1 [Cucumis sativus] >KGN56065.1 hypothetical protein Csa_011545 [Cucumis sativus])

HSP 1 Score: 724 bits (1869), Expect = 6.91e-263
Identity = 376/376 (100.00%), Postives = 376/376 (100.00%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120
           GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH
Sbjct: 61  GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120

Query: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180
           TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR
Sbjct: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180

Query: 181 DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240
           DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR
Sbjct: 181 DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240

Query: 241 SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRTPSHRPSHQRERPNDDRVPNR 300
           SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRTPSHRPSHQRERPNDDRVPNR
Sbjct: 241 SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRTPSHRPSHQRERPNDDRVPNR 300

Query: 301 SPSPYGRGREKGSPDGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESPNYGGTQ 360
           SPSPYGRGREKGSPDGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESPNYGGTQ
Sbjct: 301 SPSPYGRGREKGSPDGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESPNYGGTQ 360

Query: 361 SPKRRGYGSRSPQAEE 376
           SPKRRGYGSRSPQAEE
Sbjct: 361 SPKRRGYGSRSPQAEE 376

[Close]

BLAST of CsGy3G004580 vs. NCBI nr
Match: XP_008449100.1 (PREDICTED: serine/arginine-rich splicing factor RS40-like isoform X1 [Cucumis melo] >XP_016900609.1 PREDICTED: serine/arginine-rich splicing factor RS40-like isoform X1 [Cucumis melo] >KAA0065815.1 serine/arginine-rich splicing factor RS40-like isoform X1 [Cucumis melo var. makuwa] >TYJ96553.1 serine/arginine-rich splicing factor RS40-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 689 bits (1778), Expect = 5.50e-249
Identity = 364/378 (96.30%), Postives = 367/378 (97.09%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120
           GRKGRRLRVEWTKQERGIRRPG GGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH
Sbjct: 61  GRKGRRLRVEWTKQERGIRRPGGGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120

Query: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180
           TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR
Sbjct: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180

Query: 181 DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240
           DDDDKRNGYSPDRNRDRSPDRKRRS SPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR
Sbjct: 181 DDDDKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240

Query: 241 SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVR-TPSHRPSHQRERPNDDRVPN 300
           SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVR  PS+RP+HQRERPNDDRVPN
Sbjct: 241 SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRGAPSNRPTHQRERPNDDRVPN 300

Query: 301 RSPSPYGRGREKGSP-DGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESPNYGG 360
           RSPSPYGR REKGSP DGRGTSYSPRDRERSSNPDNGHDHGHDQQQ  +PEPGESPNYG 
Sbjct: 301 RSPSPYGREREKGSPTDGRGTSYSPRDRERSSNPDNGHDHGHDQQQNMVPEPGESPNYGD 360

Query: 361 TQSPKRRGYGSRSPQAEE 376
           TQSPK RGY SRSPQAEE
Sbjct: 361 TQSPKHRGYSSRSPQAEE 378

[Close]

BLAST of CsGy3G004580 vs. NCBI nr
Match: XP_038904888.1 (serine/arginine-rich splicing factor RS40-like isoform X1 [Benincasa hispida])

HSP 1 Score: 655 bits (1690), Expect = 9.33e-236
Identity = 353/377 (93.63%), Postives = 356/377 (94.43%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120
           GRKGRRLRVEWTKQERGIRRPG    G GGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH
Sbjct: 61  GRKGRRLRVEWTKQERGIRRPG----GVGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120

Query: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180
           TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR
Sbjct: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180

Query: 181 DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240
           DDDDKRNGYSPDRNRDRSPDRKRRS SPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR
Sbjct: 181 DDDDKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240

Query: 241 SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRTPSHRPSHQRERPNDDRVPNR 300
           SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSD VR PSH P HQRERPNDDRV NR
Sbjct: 241 SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDRVRAPSHSPPHQRERPNDDRVHNR 300

Query: 301 SPSPYGRGREKGSP-DGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESPNYGGT 360
           SPSPYGR  E+GSP DGRGTSYSPRDRERSSNPDNGHD    QQQ T+ EPGESP+YGGT
Sbjct: 301 SPSPYGR--ERGSPTDGRGTSYSPRDRERSSNPDNGHD----QQQNTVVEPGESPSYGGT 360

Query: 361 QSPKRRGYGSRSPQAEE 376
           QSPK RGYGSRSPQAEE
Sbjct: 361 QSPKHRGYGSRSPQAEE 367

[Close]

BLAST of CsGy3G004580 vs. NCBI nr
Match: XP_011650500.1 (serine/arginine-rich splicing factor RS40 isoform X2 [Cucumis sativus] >XP_011650501.1 serine/arginine-rich splicing factor RS40 isoform X2 [Cucumis sativus])

HSP 1 Score: 638 bits (1645), Expect = 2.03e-229
Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 0


Query: 42  MEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRS 101
           MEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRS
Sbjct: 1   MEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRS 60

Query: 102 STNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALE 161
           STNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALE
Sbjct: 61  STNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALE 120

Query: 162 LTNMSKLMDRVISVEYAVRDDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNG 221
           LTNMSKLMDRVISVEYAVRDDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNG
Sbjct: 121 LTNMSKLMDRVISVEYAVRDDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNG 180

Query: 222 ISRSPYRRQRASPDYGSRRSPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRTP 281
           ISRSPYRRQRASPDYGSRRSPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRTP
Sbjct: 181 ISRSPYRRQRASPDYGSRRSPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRTP 240

Query: 282 SHRPSHQRERPNDDRVPNRSPSPYGRGREKGSPDGRGTSYSPRDRERSSNPDNGHDHGHD 341
           SHRPSHQRERPNDDRVPNRSPSPYGRGREKGSPDGRGTSYSPRDRERSSNPDNGHDHGHD
Sbjct: 241 SHRPSHQRERPNDDRVPNRSPSPYGRGREKGSPDGRGTSYSPRDRERSSNPDNGHDHGHD 300

Query: 342 QQQTTIPEPGESPNYGGTQSPKRRGYGSRSPQAEE 376
           QQQTTIPEPGESPNYGGTQSPKRRGYGSRSPQAEE
Sbjct: 301 QQQTTIPEPGESPNYGGTQSPKRRGYGSRSPQAEE 335

[Close]

BLAST of CsGy3G004580 vs. NCBI nr
Match: XP_011650503.1 (serine/arginine-rich splicing factor RS40 isoform X2 [Cucumis sativus])

HSP 1 Score: 625 bits (1612), Expect = 6.85e-224
Identity = 334/377 (88.59%), Postives = 344/377 (91.25%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDER+AEDAI ALDRREF
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIHALDRREF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120
           GRKGRRLRVEWTKQERGIRRP       GGGGG GGGSRRSSTNTRPSKTLFVINFDPYH
Sbjct: 61  GRKGRRLRVEWTKQERGIRRPS------GGGGGSGGGSRRSSTNTRPSKTLFVINFDPYH 120

Query: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180
           TR RDLERHFDPYGKIL+VRIRRNFAFVQYELQEDATRALE+TNMSKLMDRVISVEYAVR
Sbjct: 121 TRIRDLERHFDPYGKILNVRIRRNFAFVQYELQEDATRALEVTNMSKLMDRVISVEYAVR 180

Query: 181 DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240
           DDD+KRNGYSPDRNRDRSPDRKRRS SPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR
Sbjct: 181 DDDEKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240

Query: 241 SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRTPSHRPSHQRERPNDDRVPNR 300
           SPSPYQRERERGSPDY RGRSP HSPYRRERERSSDH+R PSH P HQRERPNDDR+PNR
Sbjct: 241 SPSPYQRERERGSPDYSRGRSPKHSPYRRERERSSDHIRAPSHSPPHQRERPNDDRIPNR 300

Query: 301 SPSPYGRGREKGSP-DGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESPNYGGT 360
           SPSPY R RE+GSP  GRG SYSPRDRER  NPDNGHDH    Q+ T+ EPGE P+Y GT
Sbjct: 301 SPSPYRRERERGSPIGGRGRSYSPRDRERL-NPDNGHDH----QENTVAEPGECPSYSGT 360

Query: 361 QSPKRRGYGSRSPQAEE 376
           QSPK RGY SRSPQAEE
Sbjct: 361 QSPKHRGYNSRSPQAEE 366

[Close]

BLAST of CsGy3G004580 vs. ExPASy TrEMBL
Match: A0A0A0L2A0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063650 PE=4 SV=1)

HSP 1 Score: 724 bits (1869), Expect = 3.35e-263
Identity = 376/376 (100.00%), Postives = 376/376 (100.00%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120
           GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH
Sbjct: 61  GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120

Query: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180
           TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR
Sbjct: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180

Query: 181 DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240
           DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR
Sbjct: 181 DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240

Query: 241 SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRTPSHRPSHQRERPNDDRVPNR 300
           SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRTPSHRPSHQRERPNDDRVPNR
Sbjct: 241 SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRTPSHRPSHQRERPNDDRVPNR 300

Query: 301 SPSPYGRGREKGSPDGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESPNYGGTQ 360
           SPSPYGRGREKGSPDGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESPNYGGTQ
Sbjct: 301 SPSPYGRGREKGSPDGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESPNYGGTQ 360

Query: 361 SPKRRGYGSRSPQAEE 376
           SPKRRGYGSRSPQAEE
Sbjct: 361 SPKRRGYGSRSPQAEE 376

[Close]

BLAST of CsGy3G004580 vs. ExPASy TrEMBL
Match: A0A1S4DXA1 (serine/arginine-rich splicing factor RS40-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491067 PE=4 SV=1)

HSP 1 Score: 689 bits (1778), Expect = 2.66e-249
Identity = 364/378 (96.30%), Postives = 367/378 (97.09%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120
           GRKGRRLRVEWTKQERGIRRPG GGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH
Sbjct: 61  GRKGRRLRVEWTKQERGIRRPGGGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120

Query: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180
           TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR
Sbjct: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180

Query: 181 DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240
           DDDDKRNGYSPDRNRDRSPDRKRRS SPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR
Sbjct: 181 DDDDKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240

Query: 241 SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVR-TPSHRPSHQRERPNDDRVPN 300
           SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVR  PS+RP+HQRERPNDDRVPN
Sbjct: 241 SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRGAPSNRPTHQRERPNDDRVPN 300

Query: 301 RSPSPYGRGREKGSP-DGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESPNYGG 360
           RSPSPYGR REKGSP DGRGTSYSPRDRERSSNPDNGHDHGHDQQQ  +PEPGESPNYG 
Sbjct: 301 RSPSPYGREREKGSPTDGRGTSYSPRDRERSSNPDNGHDHGHDQQQNMVPEPGESPNYGD 360

Query: 361 TQSPKRRGYGSRSPQAEE 376
           TQSPK RGY SRSPQAEE
Sbjct: 361 TQSPKHRGYSSRSPQAEE 378

[Close]

BLAST of CsGy3G004580 vs. ExPASy TrEMBL
Match: A0A5A7VJB8 (Serine/arginine-rich splicing factor RS40-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G002140 PE=4 SV=1)

HSP 1 Score: 689 bits (1778), Expect = 2.66e-249
Identity = 364/378 (96.30%), Postives = 367/378 (97.09%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120
           GRKGRRLRVEWTKQERGIRRPG GGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH
Sbjct: 61  GRKGRRLRVEWTKQERGIRRPGGGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120

Query: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180
           TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR
Sbjct: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180

Query: 181 DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240
           DDDDKRNGYSPDRNRDRSPDRKRRS SPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR
Sbjct: 181 DDDDKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240

Query: 241 SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVR-TPSHRPSHQRERPNDDRVPN 300
           SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVR  PS+RP+HQRERPNDDRVPN
Sbjct: 241 SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRGAPSNRPTHQRERPNDDRVPN 300

Query: 301 RSPSPYGRGREKGSP-DGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESPNYGG 360
           RSPSPYGR REKGSP DGRGTSYSPRDRERSSNPDNGHDHGHDQQQ  +PEPGESPNYG 
Sbjct: 301 RSPSPYGREREKGSPTDGRGTSYSPRDRERSSNPDNGHDHGHDQQQNMVPEPGESPNYGD 360

Query: 361 TQSPKRRGYGSRSPQAEE 376
           TQSPK RGY SRSPQAEE
Sbjct: 361 TQSPKHRGYSSRSPQAEE 378

[Close]

BLAST of CsGy3G004580 vs. ExPASy TrEMBL
Match: A0A1S3BLX3 (serine/arginine-rich splicing factor RS40-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491066 PE=4 SV=1)

HSP 1 Score: 621 bits (1601), Expect = 1.63e-222
Identity = 333/378 (88.10%), Postives = 343/378 (90.74%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDER+AEDAI ALDRREF
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIHALDRREF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120
           GRKGRRLRVEWTKQERGIRRP       GGGGG GGGSRRSS+NTRPSKTLFVINFDPYH
Sbjct: 61  GRKGRRLRVEWTKQERGIRRPS------GGGGGSGGGSRRSSSNTRPSKTLFVINFDPYH 120

Query: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180
           TR RDLERHFDPYGKIL+VRIRRNFAFVQYELQEDATRALE+TNMSKLMDRVISVEYAVR
Sbjct: 121 TRIRDLERHFDPYGKILNVRIRRNFAFVQYELQEDATRALEVTNMSKLMDRVISVEYAVR 180

Query: 181 DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240
           DDD+KRNGYSPDRNRDRSPDRKRRS SPYRRERGSPDYGNGISRSPYRRQR SPDYGSRR
Sbjct: 181 DDDEKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRTSPDYGSRR 240

Query: 241 SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRTPSHRPSHQRERPNDDRVPNR 300
           SPSPYQRERERGSPDYGRGRSP HSPYRRERERSSDH R PS  P HQRERPN DR+PNR
Sbjct: 241 SPSPYQRERERGSPDYGRGRSPKHSPYRRERERSSDHTRAPSRSPLHQRERPNGDRIPNR 300

Query: 301 SPSPYGRGREKGSP--DGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESPNYGG 360
           SPSPY R RE+ SP  DGRGTSYSPRDRERS NPDNGHDH    Q+ T+ EPGE P+Y G
Sbjct: 301 SPSPYRRERERRSPIDDGRGTSYSPRDRERS-NPDNGHDH----QENTVAEPGECPSYSG 360

Query: 361 TQSPKRRGYGSRSPQAEE 376
           TQSPK RGY SRSPQAEE
Sbjct: 361 TQSPKHRGYNSRSPQAEE 367

[Close]

BLAST of CsGy3G004580 vs. ExPASy TrEMBL
Match: A0A0A0L7I3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063660 PE=4 SV=1)

HSP 1 Score: 620 bits (1600), Expect = 2.31e-222
Identity = 334/378 (88.36%), Postives = 344/378 (91.01%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDER+AEDAI ALDRREF
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIHALDRREF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120
           GRKGRRLRVEWTKQERGIRRP       GGGGG GGGSRRSSTNTRPSKTLFVINFDPYH
Sbjct: 61  GRKGRRLRVEWTKQERGIRRPS------GGGGGSGGGSRRSSTNTRPSKTLFVINFDPYH 120

Query: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180
           TR RDLERHFDPYGKIL+VRIRRNFAFVQYELQEDATRALE+TNMSKLMDRVISVEYAVR
Sbjct: 121 TRIRDLERHFDPYGKILNVRIRRNFAFVQYELQEDATRALEVTNMSKLMDRVISVEYAVR 180

Query: 181 DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240
           DDD+KRNGYSPDRNRDRSPDRKRRS SPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR
Sbjct: 181 DDDEKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRR 240

Query: 241 SPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRTPSHRPSHQRERPNDDRVPNR 300
           SPSPYQRERERGSPDY RGRSP HSPYRRERERSSDH+R PSH P HQRERPNDDR+PNR
Sbjct: 241 SPSPYQRERERGSPDYSRGRSPKHSPYRRERERSSDHIRAPSHSPPHQRERPNDDRIPNR 300

Query: 301 SPSPYGRGREKGSP-DGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESPNYGGT 360
           SPSPY R RE+GSP  GRG SYSPRDRER  NPDNGHDH    Q+ T+ EPGE P+Y GT
Sbjct: 301 SPSPYRRERERGSPIGGRGRSYSPRDRERL-NPDNGHDH----QENTVAEPGECPSYSGT 360

Query: 361 QSPKRRGYGS-RSPQAEE 376
           QSPK RGY S RSPQAEE
Sbjct: 361 QSPKHRGYNSSRSPQAEE 367

[Close]

BLAST of CsGy3G004580 vs. TAIR 10
Match: AT4G25500.1 (arginine/serine-rich splicing factor 35 )

HSP 1 Score: 379.4 bits (973), Expect = 3.3e-105
Identity = 229/377 (60.74%), Postives = 273/377 (72.41%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDERDAEDAIRALDR EF
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120
           GRKGRRLRVEWTK ER            GG    GGGSRRSS++ RPSKTLFVINFD  +
Sbjct: 61  GRKGRRLRVEWTKSER------------GGDKRSGGGSRRSSSSMRPSKTLFVINFDADN 120

Query: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180
           TRTRDLE+HF+PYGKI++VRIRRNFAF+QYE QEDATRAL+ +N SKLMD+VISVEYAV+
Sbjct: 121 TRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVK 180

Query: 181 DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISR-SPYRRQRASPDYGSR 240
           DDD + NG+SP+R RDRSP+R+RRS SPY+RERGSPDYG G S  + YR++R SPDYG R
Sbjct: 181 DDDARGNGHSPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRR 240

Query: 241 RSPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRTPSHRPSHQRERPNDDRVPN 300
           RSPSPY++ R RGSP+YGR R  N SP RRER  S       S  P+++RER + +  P 
Sbjct: 241 RSPSPYKKSR-RGSPEYGRDRRGNDSPRRRERVASPTKY---SRSPNNKRERMSPNHSPF 300

Query: 301 RSPSPYGRGREKGSPDGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESPNYGGT 360
           +  SP     E  SP  R      R+R RSS P+N    G  +   +I        Y G 
Sbjct: 301 KKESPRNGVGEVESPIER------RERSRSS-PEN----GQVESPGSIGRRDSDGGYDGA 350

Query: 361 QSPKRRGYGSRSPQAEE 377
           +SP ++    RSP A+E
Sbjct: 361 ESPMQKSRSPRSPPADE 350

[Close]

BLAST of CsGy3G004580 vs. TAIR 10
Match: AT4G25500.4 (arginine/serine-rich splicing factor 35 )

HSP 1 Score: 379.4 bits (973), Expect = 3.3e-105
Identity = 229/377 (60.74%), Postives = 273/377 (72.41%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDERDAEDAIRALDR EF
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120
           GRKGRRLRVEWTK ER            GG    GGGSRRSS++ RPSKTLFVINFD  +
Sbjct: 61  GRKGRRLRVEWTKSER------------GGDKRSGGGSRRSSSSMRPSKTLFVINFDADN 120

Query: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180
           TRTRDLE+HF+PYGKI++VRIRRNFAF+QYE QEDATRAL+ +N SKLMD+VISVEYAV+
Sbjct: 121 TRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVK 180

Query: 181 DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISR-SPYRRQRASPDYGSR 240
           DDD + NG+SP+R RDRSP+R+RRS SPY+RERGSPDYG G S  + YR++R SPDYG R
Sbjct: 181 DDDARGNGHSPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRR 240

Query: 241 RSPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRTPSHRPSHQRERPNDDRVPN 300
           RSPSPY++ R RGSP+YGR R  N SP RRER  S       S  P+++RER + +  P 
Sbjct: 241 RSPSPYKKSR-RGSPEYGRDRRGNDSPRRRERVASPTKY---SRSPNNKRERMSPNHSPF 300

Query: 301 RSPSPYGRGREKGSPDGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESPNYGGT 360
           +  SP     E  SP  R      R+R RSS P+N    G  +   +I        Y G 
Sbjct: 301 KKESPRNGVGEVESPIER------RERSRSS-PEN----GQVESPGSIGRRDSDGGYDGA 350

Query: 361 QSPKRRGYGSRSPQAEE 377
           +SP ++    RSP A+E
Sbjct: 361 ESPMQKSRSPRSPPADE 350

[Close]

BLAST of CsGy3G004580 vs. TAIR 10
Match: AT5G52040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 372.1 bits (954), Expect = 5.3e-103
Identity = 229/382 (59.95%), Postives = 262/382 (68.59%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDERDAEDAIRALDR E+
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120
           GR GRRLRVEWTK +R             GG G  GGSRRSS+  RPSKTLFVINFD  +
Sbjct: 61  GRTGRRLRVEWTKNDR-------------GGAGRSGGSRRSSSGLRPSKTLFVINFDAQN 120

Query: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180
           TRTRDLERHF+PYGKI++VRIRRNFAF+QYE QEDATRAL+ TN SKLMD+VISVEYAV+
Sbjct: 121 TRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVK 180

Query: 181 DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYG-SR 240
           DDD + NGYSP+R RDRSPDR+RRS SPYRRERGSPDYG G S   ++R+R SPDYG  R
Sbjct: 181 DDDSRGNGYSPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGR 240

Query: 241 RSPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDH--VRTPSHRPSHQRER---PND 300
           RSPSPY+R R   SPDY R         RRER  S ++  VR  S R      R   P +
Sbjct: 241 RSPSPYKRARL--SPDYKR------DDRRRERVASPENGAVRNRSPRKGRGESRSPPPYE 300

Query: 301 DRVPNRSPSPYGRGREKGSPDGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESP 360
            R  +RSP PY + RE  SP      Y  R     S   +  ++G  +    I E     
Sbjct: 301 KRRESRSPPPYEKRRESRSP----PPYEKRRERSRSRSKSSPENGQVESPGQIMEVEAGR 357

Query: 361 NYGGTQSPKRRGYGSRSPQAEE 377
            Y G  SP R    SRSP AEE
Sbjct: 361 GYDGADSPIRESSPSRSPPAEE 357

[Close]

BLAST of CsGy3G004580 vs. TAIR 10
Match: AT5G52040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 368.2 bits (944), Expect = 7.7e-102
Identity = 229/382 (59.95%), Postives = 262/382 (68.59%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREF 60
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDERDAEDAIRALDR E+
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYH 120
           GR GRRLRVEWTK +R             GG G  GGSRRSS+  RPSKTLFVINFD  +
Sbjct: 61  GRTGRRLRVEWTKNDR-------------GGAGRSGGSRRSSSGLRPSKTLFVINFDAQN 120

Query: 121 TRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVR 180
           TRTRDLERHF+PYGKI++VRIRRNFAF+QYE QEDATRAL+ TN SKLMD+VISVEYAV+
Sbjct: 121 TRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVK 180

Query: 181 DDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYG-SR 240
           DDD + NGYSP+R RDRSPDR+RRS SPYRRERGSPDYG G S   ++R+R SPDYG  R
Sbjct: 181 DDDSRGNGYSPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGR 240

Query: 241 RSPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDH--VRTPSHRPSHQRER---PND 300
           RSPSPY+R R   SPDY R         RRER  S ++  VR  S R      R   P +
Sbjct: 241 RSPSPYKRARL--SPDYKR------DDRRRERVASPENGAVRNRSPRKGRGESRSPPPYE 300

Query: 301 DRVPNRSPSPYGRGREKGSPDGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESP 360
            R  +RSP PY + RE  SP      Y  R     S   +  ++G  +    I E     
Sbjct: 301 KRRESRSPPPYEKRRESRSP----PPYEKRRERSRSRSKSSPENGQVESPGQIMEVEAGR 356

Query: 361 NYGGTQSPKRRGYGSRSPQAEE 377
            Y G  SP R    SRSP AEE
Sbjct: 361 GYDGADSPIRES-PSRSPPAEE 356

[Close]

BLAST of CsGy3G004580 vs. TAIR 10
Match: AT4G25500.3 (arginine/serine-rich splicing factor 35 )

HSP 1 Score: 315.8 bits (808), Expect = 4.5e-86
Identity = 201/342 (58.77%), Postives = 240/342 (70.18%), Query Frame = 0


Query: 36  GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGG 95
           GFAF+YMEDERDAEDAIRALDR EFGRKGRRLRVEWTK ER            GG    G
Sbjct: 3   GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSER------------GGDKRSG 62

Query: 96  GGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQED 155
           GGSRRSS++ RPSKTLFVINFD  +TRTRDLE+HF+PYGKI++VRIRRNFAF+QYE QED
Sbjct: 63  GGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQED 122

Query: 156 ATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPDRNRDRSPDRKRRSSSPYRRERGS 215
           ATRAL+ +N SKLMD+VISVEYAV+DDD + NG+SP+R RDRSP+R+RRS SPY+RERGS
Sbjct: 123 ATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPERRRDRSPERRRRSPSPYKRERGS 182

Query: 216 PDYGNGISR-SPYRRQRASPDYGSRRSPSPYQRERERGSPDYGRGRSPNHSPYRRERERS 275
           PDYG G S  + YR++R SPDYG RRSPSPY++ R RGSP+YGR R  N SP RRER  S
Sbjct: 183 PDYGRGASPVAAYRKERTSPDYGRRRSPSPYKKSR-RGSPEYGRDRRGNDSPRRRERVAS 242

Query: 276 SDHVRTPSHRPSHQRERPNDDRVPNRSPSPYGRGREKGSPDGRGTSYSPRDRERSSNPDN 335
                  S  P+++RER + +  P +  SP     E  SP  R      R+R RSS P+N
Sbjct: 243 PTKY---SRSPNNKRERMSPNHSPFKKESPRNGVGEVESPIER------RERSRSS-PEN 302

Query: 336 GHDHGHDQQQTTIPEPGESPNYGGTQSPKRRGYGSRSPQAEE 377
               G  +   +I        Y G +SP ++    RSP A+E
Sbjct: 303 ----GQVESPGSIGRRDSDGGYDGAESPMQKSRSPRSPPADE 317

The following BLAST results are available for this feature:

BLAST of CsGy3G004580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92965	4.7e-104	60.74	Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS4...	[more]
P92966	1.1e-100	59.95	Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS4...	[more]
P92964	7.6e-70	52.77	Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS3...	[more]
Q9ZPX8	8.4e-61	53.41	Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS...	[more]
Q7SXP4	1.4e-18	36.63	Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV...	[more]

BLAST of CsGy3G004580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149583.1	6.91e-263	100.00	serine/arginine-rich splicing factor RS40 isoform X1 [Cucumis sativus] >KGN56065...	[more]
XP_008449100.1	5.50e-249	96.30	PREDICTED: serine/arginine-rich splicing factor RS40-like isoform X1 [Cucumis me...	[more]
XP_038904888.1	9.33e-236	93.63	serine/arginine-rich splicing factor RS40-like isoform X1 [Benincasa hispida]	[more]
XP_011650500.1	2.03e-229	100.00	serine/arginine-rich splicing factor RS40 isoform X2 [Cucumis sativus] >XP_01165...	[more]
XP_011650503.1	6.85e-224	88.59	serine/arginine-rich splicing factor RS40 isoform X2 [Cucumis sativus]	[more]

BLAST of CsGy3G004580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2A0	3.35e-263	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063650 PE=4 SV=1	[more]
A0A1S4DXA1	2.66e-249	96.30	serine/arginine-rich splicing factor RS40-like isoform X1 OS=Cucumis melo OX=365...	[more]
A0A5A7VJB8	2.66e-249	96.30	Serine/arginine-rich splicing factor RS40-like isoform X1 OS=Cucumis melo var. m...	[more]
A0A1S3BLX3	1.63e-222	88.10	serine/arginine-rich splicing factor RS40-like isoform X2 OS=Cucumis melo OX=365...	[more]
A0A0A0L7I3	2.31e-222	88.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063660 PE=4 SV=1	[more]

BLAST of CsGy3G004580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25500.1	3.3e-105	60.74	arginine/serine-rich splicing factor 35	[more]
AT4G25500.4	3.3e-105	60.74	arginine/serine-rich splicing factor 35	[more]
AT5G52040.2	5.3e-103	59.95	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G52040.1	7.7e-102	59.95	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G25500.3	4.5e-86	58.77	arginine/serine-rich splicing factor 35	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 3..70 e-value: 1.6E-15 score: 67.6 coord: 110..176 e-value: 1.5E-16 score: 71.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 4..62 e-value: 1.4E-13 score: 50.5 coord: 111..173 e-value: 3.1E-12 score: 46.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 2..74 score: 16.636576
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 109..180 score: 15.101589
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 104..189 e-value: 6.7E-20 score: 73.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..103 e-value: 8.0E-21 score: 76.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 242..297
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 344..367
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..376
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 310..343
None	No IPR available	PANTHER	PTHR23147:SF165	BNAC01G41640D PROTEIN	coord: 4..218
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 4..218
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 85..186
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G004580.2	CsGy3G004580.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding