CsGy3G001410 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G001410
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	28 kDa ribonucleoprotein, chloroplastic
Location	Gy14Chr3: 1063177 .. 1065580 (-)
RNA-Seq Expression	CsGy3G001410
Synteny	CsGy3G001410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATCCTTTTACGTATGGATTAAAAGAAAAAATGGAAAACATAAAATATCCATCGTCTTATCCACATTCTTCGACTTCGAAATCGCAACAATGGTGACGATCGAATCCCCACTTCCAATCATTTCTCCATACATTTCTTCTTCTTCCTCTTCTTCTGCCTCGAAATTATGCTTTAATAAACTTCCCTCCCCCATTAAGCTTCGAATTTCCTTCTCCTCCCCTCTCCTTTCCCTCAATCCCACAACCCCCATTTCCCCTACCTCTTTCAATTCATCGCGAAATCGCGGCGGCGGAGCCCGACTATGTTCTGCACTGCAAGAGGTCACTTTGGAGGAAGCTTCAGAGGAAAATCAGGATGTGAATCAGAAGAGGAAATTATATATCTTCAATTTACCTTGGTCTTTATCTGTTGTTGACATTAAGGAGCTCTTTGGACAATGCGGCACTGTCTCTGATGTTGAGGTTCTTCTTCTTCTTTTCTTCTTTCTTGTATATCAATTAGAAAATCTAAACGGTAATTTATACTTGTGTCAGCTACTAATTTTTCATTATTGAATCAAAATCATCCATGTTTTTTCAAATGCCTAACTATTAAAGTAGTTAACTCTTGTAGAGGCATAGACGATTATAAGTTTTATACATTATTGAAAGTTGAGATTTTAAATTTATACCACCCTTCACACCTAAACTTTAGGAGTATGAATTGAATGATGATCTAATGTATTTGTGTTGGAATGTGTGTTTGTACTTGTATAGATTATAAAGCAGAAAAATGGAAGAAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCAGAAATTTGACTCTCAAGTAGGTTTTCTTCTACCTATTTCTGCTCACTTTCTGTTTGCTTATTTGTTCAAATGAATTTTTATTCTGTTCTATACTGGTATTCTACCAACTACATTCTTGATGTTCTGAAATTGTGCATTTTCAATTTCATTATCACTTTTAGTATGTATAAAACTACTTTGAGAGTCCTCAAAAGTTCTTTTCTTTTTGGATATTTGTAGGTTTTATAAGTCACTAGAGTTTGAACTCGTTCCTTTTACTTTCTTTTTTCACATGTTTCAATACTACTAAACCAATCTATTGTTATCCAAAAGCCCTTTTTGATCTTAGAGTTTATTGATGAGATTTATGTAGATGAGATTTATGTAGGGATGACTCAAATTTAGGTTTACTAATGTCCGATAACCTAAATTCTAAAAACAATGGAAATTAATATTTTGCTCAAGTCACAAAGCACTAGCCAACATTGAAATGCACATTCACGACCACGGGGCTTGCCCATTGCAAACTGATGCAACCGTGAACAAGTTCATGTTCGAGAATTACCAGACATGCATTTCAGTCATTCTGCTTTATGTCGGTTCTAAACATACATAAGAGAACTACTGCCTATTAAAACAGACATGTGTAGGTTCTTTTCATGGTAAGCATATAGTGTTAATATATTTGTGCAGGAAATATCAGGAAGAGTTATAAAGGTAGAGTTTGCAAAGAGATTGAAGAAACCTCCTCCACCAAAGCCTCCAGGTCCTCCTCCTGGAGAGACAGTGAATAAACTTTATGTATCAAATCTTGCATGGAAAGTGAGATCAAACAATCTCAGAGACTTCTTTTCTGAAAACTTTAACCCAATTGCAGCGAGGGTTGTCTTCGATAGTCCCGCTGGAAGATCTGCTGGTTATGGTTTTGTTTCTTTTGCTACTCGAGAGGAAGCTCAAACTGCACTTTCTTCTTTGGAGGGCAAGGTAATTTACTTCTTTACTTTCAATTTGATAACTATTTTGTTTTTAAAAATTAAGTCTATATAAACACACACTTCACCTCTAAAATTCTTGTTCCAGTAGTTTTCTCTTTCTAAAATGAAAACTTGAGATAATACTTCAAAACCCGAAAAATAACTCAAGTACTACGACAAATTTTCGCCCCTAATGCAAGTGGAATGTTCAATTTCTTTCCTTCCTAACAGATTTGAAATGCTTTACATTTTCCCTCTACAGGAATTGATGGGAAGACCCCTTCGCCTGAAATTCAGTGAAAGAAATGTCAATGAAGCAGAAACCCCAAAAGAAGACATTGTTGAAAGCCAACCTGAAGAATCATAGACCCACTCAGTTTCAACATCAGAATCATCCCTTGGTAGAAAACTCTGAACCAAGATTTTGCTTGAGAATTCCAACTGCCGCTTATGAGATTTGCTGGTGGTGTGATCTGTACATCTTTTACAGCTATTTTTGTAGTGTATTTGTAGTATCTTAACATTTTCTGTCATCTCAAGTTTTCTGAATCAAAGTCCTTATGGACTCTTTTGTTTTGTCTCAAAAAAGTTCATCTCTGTTCCAAAAAGTAG

mRNA sequence

ATATCCTTTTACGTATGGATTAAAAGAAAAAATGGAAAACATAAAATATCCATCGTCTTATCCACATTCTTCGACTTCGAAATCGCAACAATGGTGACGATCGAATCCCCACTTCCAATCATTTCTCCATACATTTCTTCTTCTTCCTCTTCTTCTGCCTCGAAATTATGCTTTAATAAACTTCCCTCCCCCATTAAGCTTCGAATTTCCTTCTCCTCCCCTCTCCTTTCCCTCAATCCCACAACCCCCATTTCCCCTACCTCTTTCAATTCATCGCGAAATCGCGGCGGCGGAGCCCGACTATGTTCTGCACTGCAAGAGGTCACTTTGGAGGAAGCTTCAGAGGAAAATCAGGATGTGAATCAGAAGAGGAAATTATATATCTTCAATTTACCTTGGTCTTTATCTGTTGTTGACATTAAGGAGCTCTTTGGACAATGCGGCACTGTCTCTGATGTTGAGATTATAAAGCAGAAAAATGGAAGAAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCAGAAATTTGACTCTCAAGAAATATCAGGAAGAGTTATAAAGGTAGAGTTTGCAAAGAGATTGAAGAAACCTCCTCCACCAAAGCCTCCAGGTCCTCCTCCTGGAGAGACAGTGAATAAACTTTATGTATCAAATCTTGCATGGAAAGTGAGATCAAACAATCTCAGAGACTTCTTTTCTGAAAACTTTAACCCAATTGCAGCGAGGGTTGTCTTCGATAGTCCCGCTGGAAGATCTGCTGGTTATGGTTTTGTTTCTTTTGCTACTCGAGAGGAAGCTCAAACTGCACTTTCTTCTTTGGAGGGCAAGGAATTGATGGGAAGACCCCTTCGCCTGAAATTCAGTGAAAGAAATGTCAATGAAGCAGAAACCCCAAAAGAAGACATTGTTGAAAGCCAACCTGAAGAATCATAGACCCACTCAGTTTCAACATCAGAATCATCCCTTGGTAGAAAACTCTGAACCAAGATTTTGCTTGAGAATTCCAACTGCCGCTTATGAGATTTGCTGGTGGTGTGATCTGTACATCTTTTACAGCTATTTTTGTAGTGTATTTGTAGTATCTTAACATTTTCTGTCATCTCAAGTTTTCTGAATCAAAGTCCTTATGGACTCTTTTGTTTTGTCTCAAAAAAGTTCATCTCTGTTCCAAAAAGTAG

Coding sequence (CDS)

ATGGTGACGATCGAATCCCCACTTCCAATCATTTCTCCATACATTTCTTCTTCTTCCTCTTCTTCTGCCTCGAAATTATGCTTTAATAAACTTCCCTCCCCCATTAAGCTTCGAATTTCCTTCTCCTCCCCTCTCCTTTCCCTCAATCCCACAACCCCCATTTCCCCTACCTCTTTCAATTCATCGCGAAATCGCGGCGGCGGAGCCCGACTATGTTCTGCACTGCAAGAGGTCACTTTGGAGGAAGCTTCAGAGGAAAATCAGGATGTGAATCAGAAGAGGAAATTATATATCTTCAATTTACCTTGGTCTTTATCTGTTGTTGACATTAAGGAGCTCTTTGGACAATGCGGCACTGTCTCTGATGTTGAGATTATAAAGCAGAAAAATGGAAGAAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCAGAAATTTGACTCTCAAGAAATATCAGGAAGAGTTATAAAGGTAGAGTTTGCAAAGAGATTGAAGAAACCTCCTCCACCAAAGCCTCCAGGTCCTCCTCCTGGAGAGACAGTGAATAAACTTTATGTATCAAATCTTGCATGGAAAGTGAGATCAAACAATCTCAGAGACTTCTTTTCTGAAAACTTTAACCCAATTGCAGCGAGGGTTGTCTTCGATAGTCCCGCTGGAAGATCTGCTGGTTATGGTTTTGTTTCTTTTGCTACTCGAGAGGAAGCTCAAACTGCACTTTCTTCTTTGGAGGGCAAGGAATTGATGGGAAGACCCCTTCGCCTGAAATTCAGTGAAAGAAATGTCAATGAAGCAGAAACCCCAAAAGAAGACATTGTTGAAAGCCAACCTGAAGAATCATAG

Protein sequence

MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFNSSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES*

Homology

[Close]

BLAST of CsGy3G001410 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-31
Identity = 85/223 (38.12%), Postives = 136/223 (60.99%), Query Frame = 0


Query: 73  SALQEVTLEEASE--ENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQK- 132
           SA +E  +EE  E  E++ V   R LY+ NLP+S++   + E+F + GTV++VEI+  + 
Sbjct: 92  SAEEEEEIEEKEERVESESVEGGR-LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRV 151

Query: 133 NGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAK----RLKKPPPPKPPGPPP 192
             RSRGFAFVTM S +EA+ AI+ FD  ++ GR +KV F +      ++    K      
Sbjct: 152 TDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQ 211

Query: 193 G--ETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREE 252
           G  ++ +KLYV+NL+W + S  LRD F++    ++A+V++D  +GRS G+GF++F++ E 
Sbjct: 212 GFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEA 271

Query: 253 AQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPE 287
             +AL ++   EL GRPLRL  + +    +  P   +VE+ PE
Sbjct: 272 MNSALDTMNEVELEGRPLRLNVAGQKAPVSSPP---VVETSPE 310

[Close]

BLAST of CsGy3G001410 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.3e-31
Identity = 78/230 (33.91%), Postives = 125/230 (54.35%), Query Frame = 0


Query: 77  EVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQK-NGRSRG 136
           E  +EE  +  Q   ++ +LY+ NLP++++  ++ ++FG+ GTV DV+I+  K   RSRG
Sbjct: 99  EEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRG 158

Query: 137 FAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGE-------- 196
           F FVTM S +EA+ A+Q F+S +I GR +KV F           P  P  GE        
Sbjct: 159 FGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNF-----------PEVPRGGENEVMRTKI 218

Query: 197 ---------TVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSF 256
                    + +K+Y  NL W + S  L+D F +    + A+V+++   GRS G+GF+SF
Sbjct: 219 RDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISF 278

Query: 257 ATREEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 289
            + E  Q+AL+++ G E+ GR LRL  +        +P   + E + EE+
Sbjct: 279 ESAENVQSALATMNGVEVEGRALRLNLASEREKPTVSP-PSVEEGETEEA 316

[Close]

BLAST of CsGy3G001410 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.0e-29
Identity = 96/269 (35.69%), Postives = 143/269 (53.16%), Query Frame = 0


Query: 20  SSSASKLCFNK-------LPSPIKLRIS---FSSPLLSLNPTTPISPTSFNSSRNRGGGA 79
           +SSAS L F         LP P     S   FS P  SLN +   S + F+S   R    
Sbjct: 2   ASSASSLHFLSLTPQTLPLPKPTSQTTSLSFFSLPPSSLNLSLSSSSSCFSSRFVRKVTL 61

Query: 80  RLCSALQEV-TLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQ 139
                +++V   ++  EE ++ +   K+++ NLP+S     + ELF + G V  VE+I  
Sbjct: 62  SDFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYD 121

Query: 140 K-NGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPK-------- 199
           K  GRSRGF FVTM+S +E +AA Q+F+  E+ GR ++V        PPP K        
Sbjct: 122 KLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-----SGPPPEKRENSSFRG 181

Query: 200 -PPGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSF 259
              G    ++ N++YV NLAW V  + L   FSE    + A+VV+D  +GRS G+GFV++
Sbjct: 182 GSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTY 241

Query: 260 ATREEAQTALSSLEGKELMGRPLRLKFSE 268
           ++ EE   A+ SL+G +L GR +R+  +E
Sbjct: 242 SSAEEVNNAIESLDGVDLNGRAIRVSPAE 265

[Close]

BLAST of CsGy3G001410 vs. ExPASy Swiss-Prot
Match: P49313 (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.2e-28
Identity = 93/276 (33.70%), Postives = 141/276 (51.09%), Query Frame = 0


Query: 20  SSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFNSSRNRGGGARLCSALQEVT 79
           +SSAS L F  L     L    +S   SL+    + P+S N S +          +++VT
Sbjct: 2   ASSASSLHFLSLTPQTLLLPKPTSQTTSLS-FFSLPPSSLNLSLSSPSSCFSSRFVRKVT 61

Query: 80  L------------EEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIK 139
           L            +E  EE ++ +   K+++ NL +S     + ELF + G V  VE+I 
Sbjct: 62  LPDFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIY 121

Query: 140 QK-NGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPK------- 199
            K  GRSRGF FVTM+S +E +AA Q+F+  E+ GR ++V        PPP K       
Sbjct: 122 DKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-----SGPPPEKRENSSFR 181

Query: 200 --------PPGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSA 259
                     G    ++ N++YV NLAW V  + L   FSE    + A+VV+D  +GRS 
Sbjct: 182 ENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSR 241

Query: 260 GYGFVSFATREEAQTALSSLEGKELMGRPLRLKFSE 268
           G+GFV++++ EE   A+ SL+G +L GR +R+  +E
Sbjct: 242 GFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271

[Close]

BLAST of CsGy3G001410 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 9.4e-28
Identity = 68/193 (35.23%), Postives = 116/193 (60.10%), Query Frame = 0


Query: 77  EVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKN-GRSRG 136
           EV  +E  EE Q+  +  KL++ NLP+ +    +  LF Q G V   E+I  ++  +SRG
Sbjct: 119 EVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRG 178

Query: 137 FAFVTMASPDEAQAAIQKFDSQEISGRVIKV-EFAKRLKKPPPPKPPGPPPGETVNKLYV 196
           F FVTM++ +EA+ A++ ++  +++GR++ V + A+R ++P  P    P   E   ++YV
Sbjct: 179 FGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERP----PRTFEQSYRIYV 238

Query: 197 SNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGK 256
            N+ W +    L   FSE+   ++ARVV+D   GRS G+GFV+ A+  E   A+++L+G+
Sbjct: 239 GNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQ 298

Query: 257 ELMGRPLRLKFSE 268
            L GR +R+  +E
Sbjct: 299 SLDGRTIRVNVAE 307

[Close]

BLAST of CsGy3G001410 vs. NCBI nr
Match: XP_011650340.1 (29 kDa ribonucleoprotein A, chloroplastic [Cucumis sativus] >KGN55743.1 hypothetical protein Csa_011017 [Cucumis sativus])

HSP 1 Score: 556 bits (1433), Expect = 2.13e-199
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0


Query: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN 60
           MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN
Sbjct: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN 60

Query: 61  SSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTV 120
           SSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTV
Sbjct: 61  SSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTV 120

Query: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180
           SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP
Sbjct: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFAT 240
           PGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFAT
Sbjct: 181 PGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFAT 240

Query: 241 REEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288
           REEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES
Sbjct: 241 REEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288

[Close]

BLAST of CsGy3G001410 vs. NCBI nr
Match: XP_008448669.1 (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo])

HSP 1 Score: 512 bits (1319), Expect = 4.51e-182
Identity = 265/288 (92.01%), Postives = 276/288 (95.83%), Query Frame = 0


Query: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN 60
           M T+ES LPIISPY+SSSSSS   KLCFNKLPS IKLRISFSSPLLSLNP TPISP SFN
Sbjct: 1   MATLESALPIISPYVSSSSSS---KLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFN 60

Query: 61  SSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTV 120
           SSRN GGG RLCSA+QEV+LEEASEE QDVNQK+KLYIFNLPWSLSVVDIKELFGQCGTV
Sbjct: 61  SSRNPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTV 120

Query: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180
           SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKR K+PPPPKP
Sbjct: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFAT 240
           PGPPPGETVNKLYVSNLAWKVRS+NLRDFFSE+FNPIAARVVFDSP+GRSAGYGFVSFAT
Sbjct: 181 PGPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFAT 240

Query: 241 REEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288
           REEAQTALSSLEGKELMGRPLRLKFSER+VNE+ETPKEDIVESQPEES
Sbjct: 241 REEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285

[Close]

BLAST of CsGy3G001410 vs. NCBI nr
Match: KAA0053033.1 (28 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK11488.1 28 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 504 bits (1297), Expect = 9.44e-179
Identity = 263/288 (91.32%), Postives = 274/288 (95.14%), Query Frame = 0


Query: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN 60
           M T+ES LPIISPY+SSSSSS   KLCFNKLPS IKLRISFSSPLLSLNP TPISP SFN
Sbjct: 1   MATLESALPIISPYVSSSSSS---KLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFN 60

Query: 61  SSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTV 120
           SSRN GGG RLCSA+QEV+LEEASEE QDVNQK+KLYIFNLPWSLSVVDIKELFGQCGTV
Sbjct: 61  SSRNPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTV 120

Query: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180
           SD  IIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKR K+PPPPKP
Sbjct: 121 SD--IIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFAT 240
           PGPPPGETVNKLYVSNLAWKVRS+NLRDFFSE+FNPIAARVVFDSP+GRSAGYGFVSFAT
Sbjct: 181 PGPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFAT 240

Query: 241 REEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288
           REEAQTALSSLEGKELMGRPLRLKFSER+VNE+ETPKEDIVESQPEES
Sbjct: 241 REEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 283

[Close]

BLAST of CsGy3G001410 vs. NCBI nr
Match: XP_038904114.1 (33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])

HSP 1 Score: 479 bits (1234), Expect = 4.18e-169
Identity = 252/290 (86.90%), Postives = 268/290 (92.41%), Query Frame = 0


Query: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN 60
           M T+ES +PIIS YISSSSS    KL  NKLPS IKLRISFSSPL  LNPTT ISP S +
Sbjct: 1   MATLESAIPIISQYISSSSS----KLRLNKLPSAIKLRISFSSPLRPLNPTTAISPLSLH 60

Query: 61  SSRNRGGG--ARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCG 120
            SRN GGG  +RLCSA+QEV+LEEASE+N+DVNQK+KLYIFNLPWS SVVDIKELFGQCG
Sbjct: 61  LSRNHGGGGGSRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCG 120

Query: 121 TVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPP 180
           TV+DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPP
Sbjct: 121 TVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPP 180

Query: 181 KPPGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSF 240
           KPPGPPP ETVNKLYVSNLAWKVRS+NLR+FFSENFNP+AARVVFDSP+GRSAGYGFVSF
Sbjct: 181 KPPGPPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSF 240

Query: 241 ATREEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288
           ATREEA+TALSSLEGKELMGRPLRLKFSERNVNE+ETPKED VESQPEES
Sbjct: 241 ATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPEES 286

[Close]

BLAST of CsGy3G001410 vs. NCBI nr
Match: XP_023007582.1 (29 kDa ribonucleoprotein A, chloroplastic [Cucurbita maxima])

HSP 1 Score: 479 bits (1233), Expect = 1.10e-168
Identity = 253/294 (86.05%), Postives = 269/294 (91.50%), Query Frame = 0


Query: 1   MVTIESPLPIISPYI---SSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPT 60
           M T+ES +PIIS YI   SSSSSSS+SKL F+KLPS IKLRISFSSPLLSLNPTT +SP 
Sbjct: 1   MATLESAIPIISQYIASSSSSSSSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPL 60

Query: 61  SF---NSSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELF 120
                N  RNRGGG R CSA+QEV+LEEASEENQDVNQKRKLYIFNLPWS SVVDIKE F
Sbjct: 61  PLFLTNPWRNRGGGDRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQF 120

Query: 121 GQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 180
           GQCGTV+DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK
Sbjct: 121 GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 180

Query: 181 PPPPKPPGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYG 240
           PPPPKPPGPPPGETV+KLYVSNLAWK RS NLR+FFSENFNPIAARVVFDSP+G+SAGYG
Sbjct: 181 PPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYG 240

Query: 241 FVSFATREEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288
           FVSFATREEA+TALSSLEGKELMGRPLRLKFSER+V ++ETPKED VESQPEES
Sbjct: 241 FVSFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPKEDTVESQPEES 294

[Close]

BLAST of CsGy3G001410 vs. ExPASy TrEMBL
Match: A0A0A0L1U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009490 PE=4 SV=1)

HSP 1 Score: 556 bits (1433), Expect = 1.03e-199
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0


Query: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN 60
           MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN
Sbjct: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN 60

Query: 61  SSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTV 120
           SSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTV
Sbjct: 61  SSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTV 120

Query: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180
           SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP
Sbjct: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFAT 240
           PGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFAT
Sbjct: 181 PGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFAT 240

Query: 241 REEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288
           REEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES
Sbjct: 241 REEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288

[Close]

BLAST of CsGy3G001410 vs. ExPASy TrEMBL
Match: A0A1S3BK84 (28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490770 PE=4 SV=1)

HSP 1 Score: 512 bits (1319), Expect = 2.19e-182
Identity = 265/288 (92.01%), Postives = 276/288 (95.83%), Query Frame = 0


Query: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN 60
           M T+ES LPIISPY+SSSSSS   KLCFNKLPS IKLRISFSSPLLSLNP TPISP SFN
Sbjct: 1   MATLESALPIISPYVSSSSSS---KLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFN 60

Query: 61  SSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTV 120
           SSRN GGG RLCSA+QEV+LEEASEE QDVNQK+KLYIFNLPWSLSVVDIKELFGQCGTV
Sbjct: 61  SSRNPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTV 120

Query: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180
           SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKR K+PPPPKP
Sbjct: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFAT 240
           PGPPPGETVNKLYVSNLAWKVRS+NLRDFFSE+FNPIAARVVFDSP+GRSAGYGFVSFAT
Sbjct: 181 PGPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFAT 240

Query: 241 REEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288
           REEAQTALSSLEGKELMGRPLRLKFSER+VNE+ETPKEDIVESQPEES
Sbjct: 241 REEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285

[Close]

BLAST of CsGy3G001410 vs. ExPASy TrEMBL
Match: A0A5A7UAR3 (28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001500 PE=4 SV=1)

HSP 1 Score: 504 bits (1297), Expect = 4.57e-179
Identity = 263/288 (91.32%), Postives = 274/288 (95.14%), Query Frame = 0


Query: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN 60
           M T+ES LPIISPY+SSSSSS   KLCFNKLPS IKLRISFSSPLLSLNP TPISP SFN
Sbjct: 1   MATLESALPIISPYVSSSSSS---KLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFN 60

Query: 61  SSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTV 120
           SSRN GGG RLCSA+QEV+LEEASEE QDVNQK+KLYIFNLPWSLSVVDIKELFGQCGTV
Sbjct: 61  SSRNPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTV 120

Query: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180
           SD  IIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKR K+PPPPKP
Sbjct: 121 SD--IIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFAT 240
           PGPPPGETVNKLYVSNLAWKVRS+NLRDFFSE+FNPIAARVVFDSP+GRSAGYGFVSFAT
Sbjct: 181 PGPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFAT 240

Query: 241 REEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288
           REEAQTALSSLEGKELMGRPLRLKFSER+VNE+ETPKEDIVESQPEES
Sbjct: 241 REEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 283

[Close]

BLAST of CsGy3G001410 vs. ExPASy TrEMBL
Match: A0A6J1KZ42 (29 kDa ribonucleoprotein A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111500156 PE=4 SV=1)

HSP 1 Score: 479 bits (1233), Expect = 5.32e-169
Identity = 253/294 (86.05%), Postives = 269/294 (91.50%), Query Frame = 0


Query: 1   MVTIESPLPIISPYI---SSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPT 60
           M T+ES +PIIS YI   SSSSSSS+SKL F+KLPS IKLRISFSSPLLSLNPTT +SP 
Sbjct: 1   MATLESAIPIISQYIASSSSSSSSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPL 60

Query: 61  SF---NSSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELF 120
                N  RNRGGG R CSA+QEV+LEEASEENQDVNQKRKLYIFNLPWS SVVDIKE F
Sbjct: 61  PLFLTNPWRNRGGGDRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQF 120

Query: 121 GQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 180
           GQCGTV+DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK
Sbjct: 121 GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 180

Query: 181 PPPPKPPGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYG 240
           PPPPKPPGPPPGETV+KLYVSNLAWK RS NLR+FFSENFNPIAARVVFDSP+G+SAGYG
Sbjct: 181 PPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYG 240

Query: 241 FVSFATREEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288
           FVSFATREEA+TALSSLEGKELMGRPLRLKFSER+V ++ETPKED VESQPEES
Sbjct: 241 FVSFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPKEDTVESQPEES 294

[Close]

BLAST of CsGy3G001410 vs. ExPASy TrEMBL
Match: A0A6J1E5Z7 (33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431035 PE=4 SV=1)

HSP 1 Score: 473 bits (1217), Expect = 1.17e-166
Identity = 249/291 (85.57%), Postives = 262/291 (90.03%), Query Frame = 0


Query: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSF- 60
           M T+ES +PIIS YISSSSSS   KL    LPS IKLRISFSSPLLS NPTT +SP    
Sbjct: 1   MATLESAIPIISQYISSSSSS---KLSIRTLPSAIKLRISFSSPLLSFNPTTAVSPLPLF 60

Query: 61  --NSSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQC 120
             N SRNRGGG R CSA+QEV+LEEASEENQDVNQKRKLYIFNLPWS SVVDIKE FGQC
Sbjct: 61  LTNPSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQFGQC 120

Query: 121 GTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPP 180
           GTV+DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPP
Sbjct: 121 GTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPP 180

Query: 181 PKPPGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVS 240
           PKPPGPPPGETV+KLYVSNLAWK RS NLR+FFSENFNPIAARVVFDSP+G+SAGYGFVS
Sbjct: 181 PKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVS 240

Query: 241 FATREEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288
           FATREEA+TALSSLEGKELMGRPLRLKFSER V ++ETPKED VESQPEES
Sbjct: 241 FATREEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 288

[Close]

BLAST of CsGy3G001410 vs. TAIR 10
Match: AT2G35410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 270.8 bits (691), Expect = 1.3e-72
Identity = 154/282 (54.61%), Postives = 199/282 (70.57%), Query Frame = 0


Query: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN 60
           M  +E+ L I S    SSSSSS+    F+K  S +KL         +L+P   +   S N
Sbjct: 1   MAVLEASLSIFS---FSSSSSSSKPYLFSKRSSSLKLTALSLRIPSNLSPVFSLRSGSDN 60

Query: 61  SSR----NRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQ 120
           S R          +  SA +E + EE +EE Q+ N KRKL++FNLPWS+SV DI ELFGQ
Sbjct: 61  SRRLVSVLCSVAEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQ 120

Query: 121 CGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPP 180
           CGTV++VEII+QK+G++RGFAFVTMAS +EAQAAI KFD+ ++SGR+I V FA+R KKP 
Sbjct: 121 CGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPT 180

Query: 181 PPKP---PGPPPGETVNKLYVSNLAWKVRSNNLRDFF-SENFNPIAARVVFDSPAGRSAG 240
           P  P   P P PG+T +KLYVSNLAWK RS +LR+ F + +FNP++ARVVF  P GRS+G
Sbjct: 181 PKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSG 240

Query: 241 YGFVSFATREEAQTALSSLEGKELMGRPLRLKFSERNVNEAE 275
           YGFVSFATREEA+ A++ L GKE+MGRP+ LKFS R+ +E+E
Sbjct: 241 YGFVSFATREEAENAITKLNGKEIMGRPITLKFSLRSASESE 279

[Close]

BLAST of CsGy3G001410 vs. TAIR 10
Match: AT4G09040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 141.7 bits (356), Expect = 9.0e-34
Identity = 90/261 (34.48%), Postives = 146/261 (55.94%), Query Frame = 0


Query: 39  ISFSSPLLSLNPTTPISPTSFNSSRNRGGGARLCSALQEVTLEEASEEN------QDVNQ 98
           +S S+P L         P S   +++R   +   +  QE  LE +S  +      ++   
Sbjct: 34  LSLSTPSLCRLHRHATFPDSI-PAKSRNLTSYFSTTTQEPVLESSSSSSSAPEVVEEEIS 93

Query: 99  KRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQ 158
           K +L   N+PW+ +  DI+ LF + G+V D+E+   K  R+RG  F+ MASP+EA  A++
Sbjct: 94  KTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALK 153

Query: 159 KFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSNNLRDFF-S 218
             +S E  GR +KV++AK  KK        P P  T N L+V+NLA++ R+ +L++FF +
Sbjct: 154 SLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFN-LFVANLAFEARAKHLKEFFDA 213

Query: 219 ENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRL----KFSE 278
           +  N ++  V+F     RS+GYGFVSF T+++A+ AL   +GK+ +GRP+RL    +F +
Sbjct: 214 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 273

Query: 279 RNVNEAETPKEDIVESQPEES 289
               E   P E+  E +P +S
Sbjct: 274 LQAKEGLQPPEEEAEEEPSQS 292

[Close]

BLAST of CsGy3G001410 vs. TAIR 10
Match: AT4G09040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-33
Identity = 78/201 (38.81%), Postives = 123/201 (61.19%), Query Frame = 0


Query: 93  KRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQ 152
           K +L   N+PW+ +  DI+ LF + G+V D+E+   K  R+RG  F+ MASP+EA  A++
Sbjct: 33  KTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALK 92

Query: 153 KFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSNNLRDFF-S 212
             +S E  GR +KV++AK  KK        P P  T N L+V+NLA++ R+ +L++FF +
Sbjct: 93  SLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFN-LFVANLAFEARAKHLKEFFDA 152

Query: 213 ENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRL----KFSE 272
           +  N ++  V+F     RS+GYGFVSF T+++A+ AL   +GK+ +GRP+RL    +F +
Sbjct: 153 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 212

Query: 273 RNVNEAETPKEDIVESQPEES 289
               E   P E+  E +P +S
Sbjct: 213 LQAKEGLQPPEEEAEEEPSQS 232

[Close]

BLAST of CsGy3G001410 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 136.3 bits (342), Expect = 3.8e-32
Identity = 78/230 (33.91%), Postives = 125/230 (54.35%), Query Frame = 0


Query: 77  EVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQK-NGRSRG 136
           E  +EE  +  Q   ++ +LY+ NLP++++  ++ ++FG+ GTV DV+I+  K   RSRG
Sbjct: 99  EEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRG 158

Query: 137 FAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGE-------- 196
           F FVTM S +EA+ A+Q F+S +I GR +KV F           P  P  GE        
Sbjct: 159 FGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNF-----------PEVPRGGENEVMRTKI 218

Query: 197 ---------TVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSF 256
                    + +K+Y  NL W + S  L+D F +    + A+V+++   GRS G+GF+SF
Sbjct: 219 RDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISF 278

Query: 257 ATREEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 289
            + E  Q+AL+++ G E+ GR LRL  +        +P   + E + EE+
Sbjct: 279 ESAENVQSALATMNGVEVEGRALRLNLASEREKPTVSP-PSVEEGETEEA 316

[Close]

BLAST of CsGy3G001410 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 126.3 bits (316), Expect = 3.9e-29
Identity = 93/260 (35.77%), Postives = 134/260 (51.54%), Query Frame = 0


Query: 19  SSSSASKLCFNKLPSPIKL---RISFSSPLLSLNPTTPISPTSFNSSRNRGGGARLCSAL 78
           ++SS    CF     P  L     S +  LL  N +TP       SSR+     R+ S  
Sbjct: 2   AASSVLLSCFKSHHQPNLLHGCNYSSNQTLLRFNFSTP--KPLLISSRSCSRRFRVLSET 61

Query: 79  QEVTLEEASEE-------NQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQ 138
             V LEE  ++       +       KLY  NLP+++    + ++         VE++  
Sbjct: 62  ITVKLEEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYN 121

Query: 139 KN-GRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGE 198
           ++ G+SRGFAFVTM++ ++    I   D  E  GR +KV FA    KP P K P  P  E
Sbjct: 122 RDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFA---DKPKPNKEPLYP--E 181

Query: 199 TVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTA 258
           T +KL+V NL+W V S +L   F E  + + ARVVFD   GRS GYGFV ++++ E +TA
Sbjct: 182 TEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETA 241

Query: 259 LSSLEGKELMGRPLRLKFSE 268
           L SL+G EL GR +R+  ++
Sbjct: 242 LESLDGFELEGRAIRVNLAQ 254

The following BLAST results are available for this feature:

BLAST of CsGy3G001410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19684	1.4e-31	38.12	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q39061	5.3e-31	33.91	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
Q08935	1.0e-29	35.69	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
P49313	7.2e-28	33.70	30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]
P19683	9.4e-28	35.23	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]

BLAST of CsGy3G001410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650340.1	2.13e-199	100.00	29 kDa ribonucleoprotein A, chloroplastic [Cucumis sativus] >KGN55743.1 hypothet...	[more]
XP_008448669.1	4.51e-182	92.01	PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo]	[more]
KAA0053033.1	9.44e-179	91.32	28 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK11488.1 28 kDa ribonucle...	[more]
XP_038904114.1	4.18e-169	86.90	33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida]	[more]
XP_023007582.1	1.10e-168	86.05	29 kDa ribonucleoprotein A, chloroplastic [Cucurbita maxima]	[more]

BLAST of CsGy3G001410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1U2	1.03e-199	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009490 PE=4 SV=1	[more]
A0A1S3BK84	2.19e-182	92.01	28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490770 ...	[more]
A0A5A7UAR3	4.57e-179	91.32	28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A6J1KZ42	5.32e-169	86.05	29 kDa ribonucleoprotein A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1115...	[more]
A0A6J1E5Z7	1.17e-166	85.57	33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of CsGy3G001410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35410.1	1.3e-72	54.61	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.1	9.0e-34	34.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.2	1.2e-33	38.81	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	3.8e-32	33.91	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	3.9e-29	35.77	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 73..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 267..288
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 267..282
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..279
None	No IPR available	PANTHER	PTHR48025:SF6	CHLOROPLAST, PUTATIVE-RELATED	coord: 1..279
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 95..167 e-value: 1.5E-26 score: 104.2 coord: 191..264 e-value: 3.4E-20 score: 83.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 192..262 e-value: 2.8E-17 score: 62.3 coord: 96..165 e-value: 1.1E-18 score: 66.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 94..171 score: 19.399549
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 190..268 score: 17.762232
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 57..174 e-value: 8.8E-29 score: 102.5 coord: 175..278 e-value: 7.7E-23 score: 83.1
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 93..267

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G001410.2	CsGy3G001410.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding