CsGy3G001330 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G001330
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	binding partner of ACD11 1 isoform X2
Location	Gy14Chr3: 1002665 .. 1006013 (-)
RNA-Seq Expression	CsGy3G001330
Synteny	CsGy3G001330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAGCGATTTTTCTCTCATCAGAGGCGACGAAGACTTGTCCGCACTGAGGGGGAAATCCTATATTCACAATCAATTTTTCCGTTCCTAATTTGTTTGGGTTTCAGTTTTCCGGGCGATCGTCGGTCGATTCCTTCCCCGTTCCGGCGATTTTATCTTCCTCATTTCCAGCGATGTCGGTTAGTACTTCCTCAATTTCCCTCTCTTTTCATCGTGTTTGAAGAAGATTGGGATTGTGGGTGTGGCAAATGGTTAGGGAAAATTTTCATTGGGTTAGATTTGGACCGGTATTCTTTAGTTTTTCATTGGGGTTATGGTGCAATGTGCGTGAAGAGATTAGATCTCTTGTGGTTTACTTTACCGTTTGACTTTCCTATTGGAGGGTTTTGTGTAATGTCAAGATTTTTCCCAATCAGTGTATCAAGAATAGAGATTGGTGTTTAAGCAAATGGGTCCATTTCTATGGTTCGATTAGTGAAATGTACTTTTGAGTTTGTGCGGCATTCATTCTAAATTAGGACCAGGAGCATCATTATCACGATTACAATTGCTGCTTGTTGATTTCCGTTGTTTCTTGGCTGCACCCCTGAAAGATTTCTTGATCGAAGTGCTTATTTTGTTCTGTATGCAGATTAAGACTGTCCAAGTCAGCAATGTCTCCCTGGGAGCGTCTGAACGAGATATCAAGGAGTTTTTTTCCTTTTCTGGTGACATTGAATATCTTGAAATGCAGAGGTATGTGTACTGATTTTAATTTCAGTTTATGATACATATTTTCTTCCTTCAATTTTAGGCTAACACTAGGTATTTGTTCTTGTGCAGTGAAACTGAACGGTCTCAAACTGCTTATGTAACATTTAAGGACGCGCAAGGGGCAGAGACTGCTGTTCTTTTGTCCGTAAGTTTGCTCTCTGGACAATGTCTCTACTTCATATTAAATATAAGTTTTATACCCGTTGGTATTTAAGGTTTAATTCTCAAAGATTCCATTATTAGTGAAGCTTTGTGTCAAATTTGAAACATGGTTTGCAATCTGGTTGTTCAATATTAGAAATGATAGTGTTCTTGGCTGTTGTTAGTTGGTCAAAGGGCATAACAAAGCCTTGTCCTTAAGGGAGGAGCTGATGCTTTAACCTCATTACTAGGAAGAGATCATTAAGGGCCATAATATCCCTTCTTCAATTTTCTTTAGTTTTACCTTACATCCATATCTTCTTCAATTTTCTTTAGTTTTGCCTTTCATCATTTCCACCTTCATAAAACTGCACTGATTTCAACTGATGAATGAATTATCAGAATGATTGTGCCAGCCCTAATATCTCTATTAGGTGAGTATTGTTGCCATTTTACAATCAAATAATGTATGATCGAGTGGGCATTTTGCCCCTCAATGAGTTAACTGATGTAAGGGATATGGCCTTTTGTTCAAACAGTAGGAGGTCAAATTTTGGTTTGATTTTTCATCTATTATTGGAGGGTTTAAGATATATTAGCTGGAAGTACATTCTGCATCAATCAGATTGCCCCTTTTCTCTTTCCTTGAGATGTATTTTATCTGATCATTTTTTTCGTACACATATAAACAGTTGTATATGTAACACATTAAATATCAAGAACGAGCAATACAAGTCACTTGAGCTAGTTAGATTAATGAAACTCAACTTCTTATCAGGGAGCAACTATAGTGGATCTTTCTGTCAACATTACTCTGTGTCCCGATTATGAGCTCCCTCCTGAAGCTACTGCACCACCTCCTGTAAGATTCTTGGAAGTATTATTTTTTGGCATGCTATGTTTGAACCTGTTTTGCACTTTATATGTTTTCTCTTAGTTGACGAGATCATCATCTTGATTGTTGTAGGCCCCTGGAACTAAGCCACCTGGTGCTGCTGAATCTGCCTTTCGGAAAGCAGAGGATGTGGTTAGCGGGATGCTAGCCAAGGGCTTTATCTTGGGCAAAGATGCACTCAACTCGGCTAAGGCATTTGATGAGAAACACCAGTTAACTTCCACGGCTTCTGCTAAAGTTGCTACATTTGATAAAAAAATTGGGTTCACCGAGAAAATTAGCGCTGGTACATCGTTGGTGAGCGACAAAGTTCGGGAAGTAGACCAGAAGTTTCAGGTTTCTGAGAAGACAAAATCTGCATTTGCAGTTGCAGAAGAAAAGGTTAGCAACGCTGGATCTGCCATTATGAAAAACCGATATGTAATGAGCGGGACTAGCTGGGTTGCTGATACTTTCAATAGGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAGTTGTGGTGACAGAAGAAGAACAGAAAAAGAAGACGGTTGAAGATTTTGCTAAGGTTCATCTCTCGGAATCCCCAAAAGCAGCATCGGCACCCCCTGAGGAGCCTCAACAACGTCCAAAACCCGAACCAGCTCAAGGTCTGATCCTCTGAATTGTTGTGATGTTTGTTGATATCTATGTGTCTGAAAGTTCTTGTAGCTGTAATGTGTACTTCCCCATCATCTCTGGCATGGTTATTATATGTTAGGGTGAAAATATAGAATAGATTTCTTCCTCAATTAGTGGTCAGACTTTATTGCATAAGATATCTTCATTTTTCATTATATAAAAACAGCAAAATTTTCCATGTTGAGAACAAATTCTGCTCTTTCTACAATGCTATATGTATCTATGCAGTTCTGGCTAGTCTTGCATTTCAGAGATTTATTTATTATGTGCTTTGAATGTTAGAGTATAAGGTTAGGTAAGTTGAATCTCCTTCAATCTCGATTTTAATAATGCATTGCCTCGAAAAAATATTTAAAATGTAGGACGACTTTACTTTTGTTAATCATAGCTTGTTTTTTTATTTTTACCTCGGGCCTTTTGTAAAGGTTTCAAAACTATAATCAGAGTAGATTTTTAAAATTGGTGTCACATATTGACTAAAAATCGGGATTAATGCACCATCACACTGTTCTAAGTCTCGGTTCCACCTTTATAGAAGATCTGATAATACAATTTTGTATATAAATGCATGAAGATATACTAATCGTAGGTTGATCAGTTTTAATGTTTATAACCTGAATATTGGTTATTATTGCATATTTAAAAATATATACTTTTGCTTTTTAGAACATCTGAAAAGGCTAGATGATAATACGAAAACAATTTTATGAATACTACTACTTATGAGTTTATTTGTTTTGATGTCCAAATCCATATTTTAAAAACCAATCTAAATTGTAAGAATTAAAGAATTCATTTTCAAAAGATAGATTTTGCTTTCCAAATCTGACTATAAGAATTGGGAGTATTTCTTTAGTAAAACAAAATTCATAGTAAGAAAAATACCG

mRNA sequence

CACAGCGATTTTTCTCTCATCAGAGGCGACGAAGACTTGTCCGCACTGAGGGGGAAATCCTATATTCACAATCAATTTTTCCGTTCCTAATTTGTTTGGGTTTCAGTTTTCCGGGCGATCGTCGGTCGATTCCTTCCCCGTTCCGGCGATTTTATCTTCCTCATTTCCAGCGATGTCGATTAAGACTGTCCAAGTCAGCAATGTCTCCCTGGGAGCGTCTGAACGAGATATCAAGGAGTTTTTTTCCTTTTCTGGTGACATTGAATATCTTGAAATGCAGAGTGAAACTGAACGGTCTCAAACTGCTTATGTAACATTTAAGGACGCGCAAGGGGCAGAGACTGCTGTTCTTTTGTCCGGAGCAACTATAGTGGATCTTTCTGTCAACATTACTCTGTGTCCCGATTATGAGCTCCCTCCTGAAGCTACTGCACCACCTCCTGCCCCTGGAACTAAGCCACCTGGTGCTGCTGAATCTGCCTTTCGGAAAGCAGAGGATGTGGTTAGCGGGATGCTAGCCAAGGGCTTTATCTTGGGCAAAGATGCACTCAACTCGGCTAAGGCATTTGATGAGAAACACCAGTTAACTTCCACGGCTTCTGCTAAAGTTGCTACATTTGATAAAAAAATTGGGTTCACCGAGAAAATTAGCGCTGGTACATCGTTGGTGAGCGACAAAGTTCGGGAAGTAGACCAGAAGTTTCAGGTTTCTGAGAAGACAAAATCTGCATTTGCAGTTGCAGAAGAAAAGGTTAGCAACGCTGGATCTGCCATTATGAAAAACCGATATGTAATGAGCGGGACTAGCTGGGTTGCTGATACTTTCAATAGGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAGTTGTGGTGACAGAAGAAGAACAGAAAAAGAAGACGGTTGAAGATTTTGCTAAGGTTCATCTCTCGGAATCCCCAAAAGCAGCATCGGCACCCCCTGAGGAGCCTCAACAACGTCCAAAACCCGAACCAGCTCAAGGTCTGATCCTCTGAATTGTTGTGATGTTTGTTGATATCTATGTGTCTGAAAGTTCTTGTAGCTGTAATGTGTACTTCCCCATCATCTCTGGCATGGTTATTATATGTTAGGGTGAAAATATAGAATAGATTTCTTCCTCAATTAGTGGTCAGACTTTATTGCATAAGATATCTTCATTTTTCATTATATAAAAACAGCAAAATTTTCCATGTTGAGAACAAATTCTGCTCTTTCTACAATGCTATATGTATCTATGCAGTTCTGGCTAGTCTTGCATTTCAGAGATTTATTTATTATGTGCTTTGAATGTTAGAGTATAAGGTTAGGTAAGTTGAATCTCCTTCAATCTCGATTTTAATAATGCATTGCCTCGAAAAAATATTTAAAATGTAGGACGACTTTACTTTTGTTAATCATAGCTTGTTTTTTTATTTTTACCTCGGGCCTTTTGTAAAGGTTTCAAAACTATAATCAGAGTAGATTTTTAAAATTGGTGTCACATATTGACTAAAAATCGGGATTAATGCACCATCACACTGTTCTAAGTCTCGGTTCCACCTTTATAGAAGATCTGATAATACAATTTTGTATATAAATGCATGAAGATATACTAATCGTAGGTTGATCAGTTTTAATGTTTATAACCTGAATATTGGTTATTATTGCATATTTAAAAATATATACTTTTGCTTTTTAGAACATCTGAAAAGGCTAGATGATAATACGAAAACAATTTTATGAATACTACTACTTATGAGTTTATTTGTTTTGATGTCCAAATCCATATTTTAAAAACCAATCTAAATTGTAAGAATTAAAGAATTCATTTTCAAAAGATAGATTTTGCTTTCCAAATCTGACTATAAGAATTGGGAGTATTTCTTTAGTAAAACAAAATTCATAGTAAGAAAAATACCG

Coding sequence (CDS)

ATGTCGATTAAGACTGTCCAAGTCAGCAATGTCTCCCTGGGAGCGTCTGAACGAGATATCAAGGAGTTTTTTTCCTTTTCTGGTGACATTGAATATCTTGAAATGCAGAGTGAAACTGAACGGTCTCAAACTGCTTATGTAACATTTAAGGACGCGCAAGGGGCAGAGACTGCTGTTCTTTTGTCCGGAGCAACTATAGTGGATCTTTCTGTCAACATTACTCTGTGTCCCGATTATGAGCTCCCTCCTGAAGCTACTGCACCACCTCCTGCCCCTGGAACTAAGCCACCTGGTGCTGCTGAATCTGCCTTTCGGAAAGCAGAGGATGTGGTTAGCGGGATGCTAGCCAAGGGCTTTATCTTGGGCAAAGATGCACTCAACTCGGCTAAGGCATTTGATGAGAAACACCAGTTAACTTCCACGGCTTCTGCTAAAGTTGCTACATTTGATAAAAAAATTGGGTTCACCGAGAAAATTAGCGCTGGTACATCGTTGGTGAGCGACAAAGTTCGGGAAGTAGACCAGAAGTTTCAGGTTTCTGAGAAGACAAAATCTGCATTTGCAGTTGCAGAAGAAAAGGTTAGCAACGCTGGATCTGCCATTATGAAAAACCGATATGTAATGAGCGGGACTAGCTGGGTTGCTGATACTTTCAATAGGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAGTTGTGGTGACAGAAGAAGAACAGAAAAAGAAGACGGTTGAAGATTTTGCTAAGGTTCATCTCTCGGAATCCCCAAAAGCAGCATCGGCACCCCCTGAGGAGCCTCAACAACGTCCAAAACCCGAACCAGCTCAAGGTCTGATCCTCTGA

Protein sequence

MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVLLSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFILGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTEEEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL*

Homology

[Close]

BLAST of CsGy3G001330 vs. ExPASy Swiss-Prot
Match: Q9LFD5 (Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 3.4e-70
Identity = 152/264 (57.58%), Postives = 199/264 (75.38%), Query Frame = 0


Query: 3   IKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVLLS 62
           +++V+V N+S GA+E DIKEFFSFSG++E +++QS      +AYVTFK+ QGAETAVLLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQS---NEHSAYVTFKETQGAETAVLLS 64

Query: 63  GATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGA-AESAFRKAEDVVSGMLAKGFIL 122
           GA+I D SV I L P+Y       +PP AP  +   + AES  +KAEDVVS MLAKGFIL
Sbjct: 65  GASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKGFIL 124

Query: 123 GKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVSE 182
           GKDA+  AKAFDEKH  TSTA+A VA+ D+KIG ++K++AGTSLV++K++ VDQ FQV+E
Sbjct: 125 GKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTE 184

Query: 183 KTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTEE 242
           +TKS +A AE+ VS+AGSA+MKNRYV++G SW A  FNRVA+AAGEVGQKTKEKV   + 
Sbjct: 185 RTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKVEAEQP 244

Query: 243 EQ----KKKTVEDFAKVHLSESPK 262
            Q    +++  E ++ +H SE  K
Sbjct: 245 SQPAQSQQQLPEGYSPIHSSEYSK 258

[Close]

BLAST of CsGy3G001330 vs. ExPASy Swiss-Prot
Match: P87216 (Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vip1 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 7.1e-04
Identity = 47/183 (25.68%), Postives = 80/183 (43.72%), Query Frame = 0


Query: 6   VQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVLLSGAT 65
           V V+N+S   +E+ I +FFSF G +  +  +   E +QTA + F+     +TA+LL  A 
Sbjct: 5   VIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGE-TQTAKIQFERPSATKTALLLQDAL 64

Query: 66  IVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFILGKDA 125
           +    + IT          A +     G     AA    +    ++S +L++G+ L    
Sbjct: 65  LGQNKIQIT-----SEDGGAASTTDQGGAGGDQAARQEDKPRSAIISELLSRGYHLSDVT 124

Query: 126 LNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSL------VSDKVREVDQKFQV 183
           L  +   D+ + ++S          K  G  E   +G         V++K  EVD KF +
Sbjct: 125 LEKSIQLDQSYGVSS----------KFKGILESALSGVRSVNERYHVTEKANEVDNKFAI 171

[Close]

BLAST of CsGy3G001330 vs. NCBI nr
Match: XP_004148750.1 (binding partner of ACD11 1 isoform X1 [Cucumis sativus] >KGN55732.1 hypothetical protein Csa_011420 [Cucumis sativus])

HSP 1 Score: 528 bits (1359), Expect = 2.97e-188
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60
           MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL
Sbjct: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120
           LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180
           LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240
           EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284
           EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of CsGy3G001330 vs. NCBI nr
Match: XP_011650336.1 (binding partner of ACD11 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 526 bits (1355), Expect = 1.21e-187
Identity = 283/284 (99.65%), Postives = 283/284 (99.65%), Query Frame = 0


Query: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60
           M IKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL
Sbjct: 1   MQIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120
           LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180
           LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240
           EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284
           EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of CsGy3G001330 vs. NCBI nr
Match: XP_008448657.1 (PREDICTED: binding partner of ACD11 1 isoform X1 [Cucumis melo])

HSP 1 Score: 523 bits (1346), Expect = 2.85e-186
Identity = 281/284 (98.94%), Postives = 283/284 (99.65%), Query Frame = 0


Query: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60
           MSIKTV+VSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL
Sbjct: 1   MSIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120
           LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180
           LGKDALNSAKAFDEKHQLTSTASAKVAT DKKIGFTEKISAGTSLVSDKVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240
           EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFN+VAKAAGEVGQKTKEKVVVTE
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284
           EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of CsGy3G001330 vs. NCBI nr
Match: XP_008448658.1 (PREDICTED: binding partner of ACD11 1 isoform X2 [Cucumis melo])

HSP 1 Score: 521 bits (1342), Expect = 1.16e-185
Identity = 280/284 (98.59%), Postives = 282/284 (99.30%), Query Frame = 0


Query: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60
           M IKTV+VSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL
Sbjct: 1   MQIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120
           LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180
           LGKDALNSAKAFDEKHQLTSTASAKVAT DKKIGFTEKISAGTSLVSDKVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240
           EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFN+VAKAAGEVGQKTKEKVVVTE
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284
           EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of CsGy3G001330 vs. NCBI nr
Match: KAA0053025.1 (binding partner of ACD11 1 isoform X2 [Cucumis melo var. makuwa] >TYK11480.1 binding partner of ACD11 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 521 bits (1342), Expect = 3.17e-184
Identity = 280/284 (98.59%), Postives = 282/284 (99.30%), Query Frame = 0


Query: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60
           M IKTV+VSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL
Sbjct: 92  MQIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 151

Query: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120
           LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI
Sbjct: 152 LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 211

Query: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180
           LGKDALNSAKAFDEKHQLTSTASAKVAT DKKIGFTEKISAGTSLVSDKVREVDQKFQVS
Sbjct: 212 LGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 271

Query: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240
           EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFN+VAKAAGEVGQKTKEKVVVTE
Sbjct: 272 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVVVTE 331

Query: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284
           EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL
Sbjct: 332 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 375

[Close]

BLAST of CsGy3G001330 vs. ExPASy TrEMBL
Match: A0A0A0L545 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008890 PE=4 SV=1)

HSP 1 Score: 528 bits (1359), Expect = 1.44e-188
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60
           MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL
Sbjct: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120
           LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180
           LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240
           EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284
           EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of CsGy3G001330 vs. ExPASy TrEMBL
Match: A0A1S3BK81 (binding partner of ACD11 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490760 PE=4 SV=1)

HSP 1 Score: 523 bits (1346), Expect = 1.38e-186
Identity = 281/284 (98.94%), Postives = 283/284 (99.65%), Query Frame = 0


Query: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60
           MSIKTV+VSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL
Sbjct: 1   MSIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120
           LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180
           LGKDALNSAKAFDEKHQLTSTASAKVAT DKKIGFTEKISAGTSLVSDKVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240
           EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFN+VAKAAGEVGQKTKEKVVVTE
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284
           EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of CsGy3G001330 vs. ExPASy TrEMBL
Match: A0A1S3BK74 (binding partner of ACD11 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490760 PE=4 SV=1)

HSP 1 Score: 521 bits (1342), Expect = 5.61e-186
Identity = 280/284 (98.59%), Postives = 282/284 (99.30%), Query Frame = 0


Query: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60
           M IKTV+VSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL
Sbjct: 1   MQIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120
           LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180
           LGKDALNSAKAFDEKHQLTSTASAKVAT DKKIGFTEKISAGTSLVSDKVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240
           EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFN+VAKAAGEVGQKTKEKVVVTE
Sbjct: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVVVTE 240

Query: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284
           EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284

[Close]

BLAST of CsGy3G001330 vs. ExPASy TrEMBL
Match: A0A5A7UH68 (Binding partner of ACD11 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001410 PE=4 SV=1)

HSP 1 Score: 521 bits (1342), Expect = 1.54e-184
Identity = 280/284 (98.59%), Postives = 282/284 (99.30%), Query Frame = 0


Query: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60
           M IKTV+VSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL
Sbjct: 92  MQIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 151

Query: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120
           LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI
Sbjct: 152 LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 211

Query: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180
           LGKDALNSAKAFDEKHQLTSTASAKVAT DKKIGFTEKISAGTSLVSDKVREVDQKFQVS
Sbjct: 212 LGKDALNSAKAFDEKHQLTSTASAKVATLDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 271

Query: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240
           EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFN+VAKAAGEVGQKTKEKVVVTE
Sbjct: 272 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNKVAKAAGEVGQKTKEKVVVTE 331

Query: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284
           EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL
Sbjct: 332 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 375

[Close]

BLAST of CsGy3G001330 vs. ExPASy TrEMBL
Match: A0A6J1CV14 (binding partner of ACD11 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014836 PE=4 SV=1)

HSP 1 Score: 483 bits (1243), Expect = 6.58e-171
Identity = 262/284 (92.25%), Postives = 273/284 (96.13%), Query Frame = 0


Query: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60
           MSIKTV+VSNVSLGAS+RD+KEFFSFSGDIEYLEMQSE+ERSQTAYVTFKDAQGAETAVL
Sbjct: 1   MSIKTVKVSNVSLGASDRDVKEFFSFSGDIEYLEMQSESERSQTAYVTFKDAQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGAAESAFRKAEDVVSGMLAKGFI 120
           LSGATIVDLSVNITLCPDYELPPEATAPP A GT  PGAAESAF+KAEDVVSGMLAKGFI
Sbjct: 61  LSGATIVDLSVNITLCPDYELPPEATAPPAATGTTAPGAAESAFQKAEDVVSGMLAKGFI 120

Query: 121 LGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVS 180
           LGKDALNSAKAFDEKHQL+STASAKVATFDKKIGFTEKISAGT LVSDKVREVDQKFQVS
Sbjct: 121 LGKDALNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTLLVSDKVREVDQKFQVS 180

Query: 181 EKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTE 240
           EKTKSAFAVAE KVSNAGSAIM NR+VMSGTSWVAD FN+VAKAAGEVGQKTKEK V +E
Sbjct: 181 EKTKSAFAVAEVKVSNAGSAIMNNRFVMSGTSWVADAFNKVAKAAGEVGQKTKEKFVASE 240

Query: 241 EEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQGLIL 284
           EEQKKKTVEDFA+VHLSESPKAA+APPE PQQRPKPEPAQGLIL
Sbjct: 241 EEQKKKTVEDFAQVHLSESPKAATAPPE-PQQRPKPEPAQGLIL 283

[Close]

BLAST of CsGy3G001330 vs. TAIR 10
Match: AT4G17720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 349.4 bits (895), Expect = 2.8e-96
Identity = 193/273 (70.70%), Postives = 227/273 (83.15%), Query Frame = 0


Query: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60
           M++ TV+VSNVSLGA++RD+KEFFSFSGDI YLE QSETER++ AYVTFKD QGAETAVL
Sbjct: 1   MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPDYELPPEATAP-PPAPGTKPPGAAESAFRKAEDVVSGMLAKGF 120
           LSGATIVD SV +++ PDY+L PEA A   P    K P A +S  RKAEDVVS MLAKGF
Sbjct: 61  LSGATIVDSSVIVSMAPDYQLSPEALASLEPKDSNKSPKAGDSVLRKAEDVVSSMLAKGF 120

Query: 121 ILGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQV 180
           ILGKDA+  AK+ DEKHQLTSTASAKVA+FDKKIGFT+KI+ GT +V +KVREVDQK+QV
Sbjct: 121 ILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVREVDQKYQV 180

Query: 181 SEKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVT 240
           SEKTKSA A AE+ VSNAGSAIMKNRYV++G +WV   FN+VAKAA EVGQK KEKV + 
Sbjct: 181 SEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKEKVGMA 240

Query: 241 EEEQKKKTVEDFAKVHLSESPKAASAPPEEPQQ 273
           EEE K+K V++FA+VHLSESPKAAS+  E  ++
Sbjct: 241 EEEDKRKVVDEFARVHLSESPKAASSTQEAERE 273

[Close]

BLAST of CsGy3G001330 vs. TAIR 10
Match: AT5G46870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 323.9 bits (829), Expect = 1.3e-88
Identity = 183/286 (63.99%), Postives = 226/286 (79.02%), Query Frame = 0


Query: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60
           MS+ TV+VSNVSL A+ERD+KEFFSFSGDI YLE QSE + S+ AYVTFKD QGAETAVL
Sbjct: 1   MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPA-----PGTKPPGAAESAFRKAEDVVSGML 120
           L+G+TIVD SV +T+ PDY+LPP+A A   +       + P     S FRKAEDVVSGM+
Sbjct: 61  LTGSTIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVSGMI 120

Query: 121 AKGFILGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQ 180
           +KGF+LGKDA+  AK+ DEKHQLTSTASA+V +FDK+IGFTEKI+ GT++VS+KV+EVDQ
Sbjct: 121 SKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVKEVDQ 180

Query: 181 KFQVSEKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEK 240
           KFQV+EKTKSA A AE+ VSNAGSAIMKNRYV++G +WV   FNRV+KAA EVGQK KEK
Sbjct: 181 KFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQKAKEK 240

Query: 241 VVVT--EEEQKKKTVEDFAKVHLSESPKAASAPPEE---PQQRPKP 277
           V +   EEE+KKK V++ A VHL+ESPKA     ++   P+ + +P
Sbjct: 241 VGLAEEEEEEKKKVVDEVAIVHLTESPKALDQSEQDSKLPESKSQP 286

[Close]

BLAST of CsGy3G001330 vs. TAIR 10
Match: AT5G16840.2 (binding partner of acd11 1 )

HSP 1 Score: 269.6 bits (688), Expect = 2.8e-72
Identity = 154/264 (58.33%), Postives = 200/264 (75.76%), Query Frame = 0


Query: 3   IKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVLLS 62
           +++V+V N+S GA+E DIKEFFSFSG++E +++QS  E S  AYVTFK+ QGAETAVLLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS--AYVTFKETQGAETAVLLS 64

Query: 63  GATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGA-AESAFRKAEDVVSGMLAKGFIL 122
           GA+I D SV I L P+Y       +PP AP  +   + AES  +KAEDVVS MLAKGFIL
Sbjct: 65  GASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKGFIL 124

Query: 123 GKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVSE 182
           GKDA+  AKAFDEKH  TSTA+A VA+ D+KIG ++K++AGTSLV++K++ VDQ FQV+E
Sbjct: 125 GKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTE 184

Query: 183 KTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTEE 242
           +TKS +A AE+ VS+AGSA+MKNRYV++G SW A  FNRVA+AAGEVGQKTKEKV   + 
Sbjct: 185 RTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKVEAEQP 244

Query: 243 EQ----KKKTVEDFAKVHLSESPK 262
            Q    +++  E ++ +H SE  K
Sbjct: 245 SQPAQSQQQLPEGYSPIHSSEYSK 259

[Close]

BLAST of CsGy3G001330 vs. TAIR 10
Match: AT5G16840.3 (binding partner of acd11 1 )

HSP 1 Score: 268.5 bits (685), Expect = 6.3e-72
Identity = 153/266 (57.52%), Postives = 201/266 (75.56%), Query Frame = 0


Query: 1   MSIKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVL 60
           M++++V+V N+S GA+E DIKEFFSFSG++E +++QS      +AYVTFK+ QGAETAVL
Sbjct: 1   MAVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQS---NEHSAYVTFKETQGAETAVL 60

Query: 61  LSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGA-AESAFRKAEDVVSGMLAKGF 120
           LSGA+I D SV I L P+Y       +PP AP  +   + AES  +KAEDVVS MLAKGF
Sbjct: 61  LSGASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKGF 120

Query: 121 ILGKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQV 180
           ILGKDA+  AKAFDEKH  TSTA+A VA+ D+KIG ++K++AGTSLV++K++ VDQ FQV
Sbjct: 121 ILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQV 180

Query: 181 SEKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVT 240
           +E+TKS +A AE+ VS+AGSA+MKNRYV++G SW A  FNRVA+AAGEVGQKTKEKV   
Sbjct: 181 TERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKVEAE 240

Query: 241 EEEQ----KKKTVEDFAKVHLSESPK 262
           +  Q    +++  E ++ +H SE  K
Sbjct: 241 QPSQPAQSQQQLPEGYSPIHSSEYSK 256

[Close]

BLAST of CsGy3G001330 vs. TAIR 10
Match: AT5G16840.1 (binding partner of acd11 1 )

HSP 1 Score: 266.5 bits (680), Expect = 2.4e-71
Identity = 152/264 (57.58%), Postives = 199/264 (75.38%), Query Frame = 0


Query: 3   IKTVQVSNVSLGASERDIKEFFSFSGDIEYLEMQSETERSQTAYVTFKDAQGAETAVLLS 62
           +++V+V N+S GA+E DIKEFFSFSG++E +++QS      +AYVTFK+ QGAETAVLLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQS---NEHSAYVTFKETQGAETAVLLS 64

Query: 63  GATIVDLSVNITLCPDYELPPEATAPPPAPGTKPPGA-AESAFRKAEDVVSGMLAKGFIL 122
           GA+I D SV I L P+Y       +PP AP  +   + AES  +KAEDVVS MLAKGFIL
Sbjct: 65  GASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKGFIL 124

Query: 123 GKDALNSAKAFDEKHQLTSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVSE 182
           GKDA+  AKAFDEKH  TSTA+A VA+ D+KIG ++K++AGTSLV++K++ VDQ FQV+E
Sbjct: 125 GKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTE 184

Query: 183 KTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVADTFNRVAKAAGEVGQKTKEKVVVTEE 242
           +TKS +A AE+ VS+AGSA+MKNRYV++G SW A  FNRVA+AAGEVGQKTKEKV   + 
Sbjct: 185 RTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKVEAEQP 244

Query: 243 EQ----KKKTVEDFAKVHLSESPK 262
            Q    +++  E ++ +H SE  K
Sbjct: 245 SQPAQSQQQLPEGYSPIHSSEYSK 258

The following BLAST results are available for this feature:

BLAST of CsGy3G001330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LFD5	3.4e-70	57.58	Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1	[more]
P87216	7.1e-04	25.68	Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN...	[more]

BLAST of CsGy3G001330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148750.1	2.97e-188	100.00	binding partner of ACD11 1 isoform X1 [Cucumis sativus] >KGN55732.1 hypothetical...	[more]
XP_011650336.1	1.21e-187	99.65	binding partner of ACD11 1 isoform X2 [Cucumis sativus]	[more]
XP_008448657.1	2.85e-186	98.94	PREDICTED: binding partner of ACD11 1 isoform X1 [Cucumis melo]	[more]
XP_008448658.1	1.16e-185	98.59	PREDICTED: binding partner of ACD11 1 isoform X2 [Cucumis melo]	[more]
KAA0053025.1	3.17e-184	98.59	binding partner of ACD11 1 isoform X2 [Cucumis melo var. makuwa] >TYK11480.1 bin...	[more]

BLAST of CsGy3G001330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L545	1.44e-188	100.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008890 PE=4 SV...	[more]
A0A1S3BK81	1.38e-186	98.94	binding partner of ACD11 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490760 PE...	[more]
A0A1S3BK74	5.61e-186	98.59	binding partner of ACD11 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490760 PE...	[more]
A0A5A7UH68	1.54e-184	98.59	Binding partner of ACD11 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1CV14	6.58e-171	92.25	binding partner of ACD11 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC...	[more]

BLAST of CsGy3G001330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17720.1	2.8e-96	70.70	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	1.3e-88	63.99	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	2.8e-72	58.33	binding partner of acd11 1	[more]
AT5G16840.3	6.3e-72	57.52	binding partner of acd11 1	[more]
AT5G16840.1	2.4e-71	57.58	binding partner of acd11 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 5..74 e-value: 6.6E-7 score: 38.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 8..66 e-value: 1.2E-6 score: 28.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 4..78 score: 10.189634
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..74 e-value: 6.6E-9 score: 37.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 240..284
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 240..256
None	No IPR available	PANTHER	PTHR32343	SERINE/ARGININE-RICH SPLICING FACTOR	coord: 1..264
None	No IPR available	PANTHER	PTHR32343:SF37	BINDING PARTNER OF ACD11 1	coord: 1..264
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 3..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G001330.2	CsGy3G001330.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding