CsGy2G026010 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy2G026010
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionGlutamate receptor
LocationGy14Chr2: 33539637 .. 33540603 (+)
RNA-Seq ExpressionCsGy2G026010
SyntenyCsGy2G026010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTACCCACTTGGAAACAATGCAAATGATCCTCCCACTGTCGCTACGTGATTCTGTAAGTGTTCTTGAGATCCATTTTCTTTGAATCCCCGCTGTTAAATTTTGTTTTAGAAGTGGGGATTGGTTGATGTCGAGTTTGTAATTCTATGTAATGTTCTGTTTCAGTTTAATTCAGTGACTGGAGTGTGGTTCGATGGAGAAGAATTCTGGGGTTCAGCGATTCTTAGCTTTGACAAGCAAATTAGTAAGGGGAGATAACTTTTGTGTTGGTTTGCTGTGAACTTTCAGCTGTTAAGTCTGTTCTGTAACAGTAGTGGTTTGGTGGACATTGTCGGAGAACTGCTCGGAGTTGTAAGCATCGATCAACAATGATTGATGGGATCATCGGCGCAACCATCACCACGTTGTTAAACAGCTTTAGGGCGTCAAATCGGATGCATGCATTAATTGGGAACAGCGTCCTGTTTTGGCTTAAAATCCTCTCCGAGTAAATTTTCTTGTTCATTCTTGAGCTTTGCTTATGGAAGTCAATCTATTCTCATTTTACGTTATTGGTTTTGTGTTTTTTTTTTTTTTTACAATGACACGTTCCTCCGAAAGTAATCCCATGGCTTTGTTTTCTTTCACCGCCAATGGGATTCGAATGATTCCCTCTGATAAGACGTGCCAATCCCCCATGGCTTCGTTTTTCTTGCCTTCCTTTGTACTTATTCTTGACTTACATCTTTTTCCTATTCACGGTTTACTATTGATGATTCTGTGTTGCTGAAGTAGCTATGGTTAACTTGAGTTTATTCTTTTCGAGCTCTATACAAGAATTAGTAGTAAATAGTTCTGTAATGAATCTTTTAGGTGGAATGCTTGTTCTGCTGTGGTCTATGTTCTTGAGCTCCTTCTCTTCATTTAAAGTTTTCCTGGTTATCACCAATAGCTTTTTGCTTGTTCAGCAGTCTCCAGCTCTGTGA

mRNA sequence

ATGCTTACCCACTTGGAAACAATGCAAATGATCCTCCCACTGTCGCTACGTGATTCTTTTAATTCAGTGACTGGAGTGTGGTTCGATGGAGAAGAATTCTGGGGTTCAGCGATTCTTAGCTTTGACAAGCAAATTAGTGGAATGCTTGTTCTGCTGTGGTCTATGTTCTTGAGCTCCTTCTCTTCATTTAAAGTTTTCCTGGTTATCACCAATAGCTTTTTGCTTGTTCAGCAGTCTCCAGCTCTGTGA

Coding sequence (CDS)

ATGCTTACCCACTTGGAAACAATGCAAATGATCCTCCCACTGTCGCTACGTGATTCTTTTAATTCAGTGACTGGAGTGTGGTTCGATGGAGAAGAATTCTGGGGTTCAGCGATTCTTAGCTTTGACAAGCAAATTAGTGGAATGCTTGTTCTGCTGTGGTCTATGTTCTTGAGCTCCTTCTCTTCATTTAAAGTTTTCCTGGTTATCACCAATAGCTTTTTGCTTGTTCAGCAGTCTCCAGCTCTGTGA

Protein sequence

MLTHLETMQMILPLSLRDSFNSVTGVWFDGEEFWGSAILSFDKQISGMLVLLWSMFLSSFSSFKVFLVITNSFLLVQQSPAL*
Homology
[Close]
BLAST of CsGy2G026010 vs. NCBI nr
Match: KAE8652291.1 (hypothetical protein Csa_021898 [Cucumis sativus])

HSP 1 Score: 142 bits (358), Expect = 2.44e-42
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 10 MILPLSLRDSFNSVTGVWFDGEEFWGSAILSFDKQISGMLVLLWSMFLSSFSSFKVFLVI 69
          MILPLSLRDSFNSVTGVWFDGEEFWGSAILSFDKQISGMLVLLWSMFLSSFSSFKVFLVI
Sbjct: 1  MILPLSLRDSFNSVTGVWFDGEEFWGSAILSFDKQISGMLVLLWSMFLSSFSSFKVFLVI 60

Query: 70 TNSFLLVQQSPAL 82
          TNSFLLVQQSPAL
Sbjct: 61 TNSFLLVQQSPAL 73

[Close]
BLAST of CsGy2G026010 vs. NCBI nr
Match: KAA0043456.1 (glutamate receptor 3.7-like [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 4.43e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0 

Query: 8  MQMILPLSLRDSFNSVTGVWFDGEEFWGSAILSFDKQIS 46
          MQMILPLSLRDSFNSVTGVWF G+EFWGSAILSFDKQIS
Sbjct: 1  MQMILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQIS 39

[Close]
BLAST of CsGy2G026010 vs. NCBI nr
Match: TYK24226.1 (glutamate receptor 3.7-like [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 6.06e-15
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 8  MQMILPLSLRDSFNSVTGVWFDGEEFWGSAILSFDKQISGM 48
          MQMILPLSLRDSFNSVTGVWF G+EFWGSAILSFDKQI  M
Sbjct: 1  MQMILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQIIAM 41

[Close]
BLAST of CsGy2G026010 vs. NCBI nr
Match: KAG7010730.1 (hypothetical protein SDJN02_27526, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.2 bits (165), Expect = 3.13e-12
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 2   LTHLETMQMILPLSLRDSFNSVTGVWFDG---EEFWGSAILSFDKQIS 46
           LT LETM+M+LPLSLRDSFNSVT VWF+G   ++ +GSAIL FDK+IS
Sbjct: 91  LTQLETMRMVLPLSLRDSFNSVTEVWFNGSRGKKLYGSAILRFDKEIS 138

[Close]
BLAST of CsGy2G026010 vs. ExPASy TrEMBL
Match: A0A5A7TN37 (Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00740 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.15e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0 

Query: 8  MQMILPLSLRDSFNSVTGVWFDGEEFWGSAILSFDKQIS 46
          MQMILPLSLRDSFNSVTGVWF G+EFWGSAILSFDKQIS
Sbjct: 1  MQMILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQIS 39

[Close]
BLAST of CsGy2G026010 vs. ExPASy TrEMBL
Match: A0A5D3DKR7 (Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00320 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.93e-15
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 8  MQMILPLSLRDSFNSVTGVWFDGEEFWGSAILSFDKQISGM 48
          MQMILPLSLRDSFNSVTGVWF G+EFWGSAILSFDKQI  M
Sbjct: 1  MQMILPLSLRDSFNSVTGVWFHGKEFWGSAILSFDKQIIAM 41

[Close]
BLAST of CsGy2G026010 vs. ExPASy TrEMBL
Match: A0A0A0LT93 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418910 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.53e-12
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0 

Query: 47 GMLVLLWSMFLSSFSSFKVFLVITNSFLLVQQSPAL 82
          GMLVLLWSMFLSSFSSFKVFLVITNSFLLVQQSPAL
Sbjct: 46 GMLVLLWSMFLSSFSSFKVFLVITNSFLLVQQSPAL 81

The following BLAST results are available for this feature:
BLAST of CsGy2G026010 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy2G026010 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652291.12.44e-42100.00hypothetical protein Csa_021898 [Cucumis sativus][more]
KAA0043456.14.43e-1594.87glutamate receptor 3.7-like [Cucumis melo var. makuwa][more]
TYK24226.16.06e-1590.24glutamate receptor 3.7-like [Cucumis melo var. makuwa][more]
KAG7010730.13.13e-1270.83hypothetical protein SDJN02_27526, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CsGy2G026010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TN372.15e-1594.87Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G... [more]
A0A5D3DKR72.93e-1590.24Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00... [more]
A0A0A0LT931.53e-12100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418910 PE=4 SV=1[more]
BLAST of CsGy2G026010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G026010.2CsGy2G026010.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034220 ion transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0015276 ligand-gated ion channel activity