CsGy2G025035 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G025035
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	zf-RVT domain-containing protein
Location	Gy14Chr2: 32628524 .. 32629396 (-)
RNA-Seq Expression	CsGy2G025035
Synteny	CsGy2G025035

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAGACCAAGGGTGCCTCCCAAAGTCAAGTTGTCAATGTGGAAGACTGCTACTAACTCCCTCCCTACTCTCAGTAATATCACCAAAAGGGGAATCATTACCAATCCTTTGTGTTTATTTTGCAGGAAGTCTGTGGAGGATGCGAGTCACATGTTTTGGGGATGCAAAATTTTTAGGCGTGTTTTGCTCTCTCTTTTTCCTTCCTTATATTCCTTTTTGTCGGGTTTCAAGAGCTATCGAAGCTTAATGGATCGTTGGAAAGGAACTACCGAGGCACTAAAAGGGTTGAATCAGTAAGTCAATGCTATATACTTCAATGGGAAGTGTGGAATTACAGAAACCAACTAAAGCACAAAGGGTCCCGATCAGACTGTGTTATGTCGACTAATAGGGTACTCGTGCGCGGTTGGAGGAGTTAGTGGGTGTTTACTCACTTGAGGCTCCAGTTTTGTGGGAAAAGTTCCAGGTGATATGGAGTTGTGGGTGTCGTTGCCTTCTAGGTTCTGGAAGCTCAATTCGAATGCGTCTTGATTGGATCATGAAGGGGTTGGGGGCATTAGTTGAGTGGTTCTTGACTCCTCCTTGCTGGATGCGGGAGAGTTTGCCTTGGCTTGTTCAAACCCTTGAAGCTTTGGTGATGCTAGCTCAACCCTTGAAGCTTTGGTGATGCTAGCTCTTTATTTGACTATTTTGCTTGTGGTTGGGTCAGACTCTAATGAACTCATTTATGCTATTCTGCCCAAGAGTCTTGACTGGTATATGGCTCGTCCAACCGATGTTTGTGGTGATTGGTCCGGCTTTTTGTTGCCAACTTTTATTGCTCTGAAGTTGTGGTTGGACTTCAATGTGATATCTAGTGAATCAATTTAA

mRNA sequence

ATGTGGAGACCAAGGGTGCCTCCCAAAGTCAAGTTGTCAATGTGGAAGACTGCTACTAACTCCCTCCCTACTCTCAGTAATATCACCAAAAGGGGAATCATTACCAATCCTTTGTGTTTATTTTGCAGGAAGTCTGTGGAGGATGCGAAGCTATCGAAGCTTAATGGATCGTTGGAAAGGAACTACCGAGGCACTAAAAGGGTTGAATCAGGTACTCGTGCGCGGTTGGAGGAGTTAGTGGGTGTTTACTCACTTGAGGCTCCAGTTTTGTGGGAAAAGTTCCAGGTGATATGGAGTTGTGGGTGTCGTTGCCTTCTAGGTTCTGGAAGCTCAATTCGAATGCGTCTTGATTGGATCATGAAGGGGTTGGGGGCATTAGTTGAGTGGTTCTTGACTCCTCCTTGCTGGATGCGGGAGAGTTTGCCTTGGCTTGTTCAAACCCTTGAAGCTTTGAGTCTTGACTGGTATATGGCTCGTCCAACCGATGTTTGTGGTGATTGGTCCGGCTTTTTGTTGCCAACTTTTATTGCTCTGAAGTTGTGGTTGGACTTCAATGTGATATCTAGTGAATCAATTTAA

Coding sequence (CDS)

ATGTGGAGACCAAGGGTGCCTCCCAAAGTCAAGTTGTCAATGTGGAAGACTGCTACTAACTCCCTCCCTACTCTCAGTAATATCACCAAAAGGGGAATCATTACCAATCCTTTGTGTTTATTTTGCAGGAAGTCTGTGGAGGATGCGAAGCTATCGAAGCTTAATGGATCGTTGGAAAGGAACTACCGAGGCACTAAAAGGGTTGAATCAGGTACTCGTGCGCGGTTGGAGGAGTTAGTGGGTGTTTACTCACTTGAGGCTCCAGTTTTGTGGGAAAAGTTCCAGGTGATATGGAGTTGTGGGTGTCGTTGCCTTCTAGGTTCTGGAAGCTCAATTCGAATGCGTCTTGATTGGATCATGAAGGGGTTGGGGGCATTAGTTGAGTGGTTCTTGACTCCTCCTTGCTGGATGCGGGAGAGTTTGCCTTGGCTTGTTCAAACCCTTGAAGCTTTGAGTCTTGACTGGTATATGGCTCGTCCAACCGATGTTTGTGGTGATTGGTCCGGCTTTTTGTTGCCAACTTTTATTGCTCTGAAGTTGTGGTTGGACTTCAATGTGATATCTAGTGAATCAATTTAA

Protein sequence

MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAKLSKLNGSLERNYRGTKRVESGTRARLEELVGVYSLEAPVLWEKFQVIWSCGCRCLLGSGSSIRMRLDWIMKGLGALVEWFLTPPCWMRESLPWLVQTLEALSLDWYMARPTDVCGDWSGFLLPTFIALKLWLDFNVISSESI*

Homology

[Close]

BLAST of CsGy2G025035 vs. NCBI nr
Match: KGN63144.1 (hypothetical protein Csa_022313 [Cucumis sativus])

HSP 1 Score: 408 bits (1048), Expect = 6.49e-144
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAKLSKLNGSLER 60
           MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAKLSKLNGSLER
Sbjct: 1   MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAKLSKLNGSLER 60

Query: 61  NYRGTKRVESGTRARLEELVGVYSLEAPVLWEKFQVIWSCGCRCLLGSGSSIRMRLDWIM 120
           NYRGTKRVESGTRARLEELVGVYSLEAPVLWEKFQVIWSCGCRCLLGSGSSIRMRLDWIM
Sbjct: 61  NYRGTKRVESGTRARLEELVGVYSLEAPVLWEKFQVIWSCGCRCLLGSGSSIRMRLDWIM 120

Query: 121 KGLGALVEWFLTPPCWMRESLPWLVQTLEALSLDWYMARPTDVCGDWSGFLLPTFIALKL 180
           KGLGALVEWFLTPPCWMRESLPWLVQTLEALSLDWYMARPTDVCGDWSGFLLPTFIALKL
Sbjct: 121 KGLGALVEWFLTPPCWMRESLPWLVQTLEALSLDWYMARPTDVCGDWSGFLLPTFIALKL 180

Query: 181 WLDFNVISSESI 192
           WLDFNVISSESI
Sbjct: 181 WLDFNVISSESI 192

[Close]

BLAST of CsGy2G025035 vs. NCBI nr
Match: CAB4267113.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 57.0 bits (136), Expect = 1.02e-05
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 1   MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAK 50
           +W  +V PK+KL  W+  TNSLPTL N+  R I  NP+C FC  S E A+
Sbjct: 132 IWNMKVIPKIKLFFWRALTNSLPTLRNLFHRRIRANPVCSFCNSSDESAE 181

[Close]

BLAST of CsGy2G025035 vs. NCBI nr
Match: KAA0062301.1 (hypothetical protein E6C27_scaffold154G00480 [Cucumis melo var. makuwa] >TYK26676.1 hypothetical protein E5676_scaffold313G003320 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 2.68e-05
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 8   PKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRK-----SVEDAKLSKLNGSLERN 61
           PKVKL+MWK A ++L TL NI K+GI+ NP+CLFCR        +D    KL+G++ ++
Sbjct: 147 PKVKLTMWK-AISALATLDNICKKGIVANPICLFCRVCWSLGDYKDRNSLKLSGAVAKS 204

[Close]

BLAST of CsGy2G025035 vs. NCBI nr
Match: CAB4112878.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 53.9 bits (128), Expect = 3.12e-05
Identity = 23/54 (42.59%), Postives = 32/54 (59.26%), Query Frame = 0


Query: 2  WRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAKLSKLN 55
          W  RVP KV +  W+ A   +PT +N+ KRGI TNP+C+ C +  E  +   LN
Sbjct: 12 WNNRVPKKVNILAWRVAHGRIPTRANLLKRGIGTNPMCILCEQETETEEHLFLN 65

[Close]

BLAST of CsGy2G025035 vs. NCBI nr
Match: KYP57286.1 (Putative ribonuclease H protein At1g65750 family [Cajanus cajan] >KYP57288.1 Putative ribonuclease H protein At1g65750 family [Cajanus cajan])

HSP 1 Score: 54.3 bits (129), Expect = 3.16e-05
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 1   MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNP---LCLFCRKSVEDA 49
           MW+  VPPKV L +W+   N+LPT  N+ +R I   P   LC+FCR S+E A
Sbjct: 118 MWKLHVPPKVSLFVWRLLINALPTKENLLRRNIQVEPQHRLCVFCRASLETA 169

[Close]

BLAST of CsGy2G025035 vs. ExPASy TrEMBL
Match: A0A0A0LQ43 (zf-RVT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G404950 PE=4 SV=1)

HSP 1 Score: 408 bits (1048), Expect = 3.14e-144
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAKLSKLNGSLER 60
           MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAKLSKLNGSLER
Sbjct: 1   MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAKLSKLNGSLER 60

Query: 61  NYRGTKRVESGTRARLEELVGVYSLEAPVLWEKFQVIWSCGCRCLLGSGSSIRMRLDWIM 120
           NYRGTKRVESGTRARLEELVGVYSLEAPVLWEKFQVIWSCGCRCLLGSGSSIRMRLDWIM
Sbjct: 61  NYRGTKRVESGTRARLEELVGVYSLEAPVLWEKFQVIWSCGCRCLLGSGSSIRMRLDWIM 120

Query: 121 KGLGALVEWFLTPPCWMRESLPWLVQTLEALSLDWYMARPTDVCGDWSGFLLPTFIALKL 180
           KGLGALVEWFLTPPCWMRESLPWLVQTLEALSLDWYMARPTDVCGDWSGFLLPTFIALKL
Sbjct: 121 KGLGALVEWFLTPPCWMRESLPWLVQTLEALSLDWYMARPTDVCGDWSGFLLPTFIALKL 180

Query: 181 WLDFNVISSESI 192
           WLDFNVISSESI
Sbjct: 181 WLDFNVISSESI 192

[Close]

BLAST of CsGy2G025035 vs. ExPASy TrEMBL
Match: A0A6J5TTA1 (RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS9686 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.94e-06
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 1   MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAK 50
           +W  +V PK+KL  W+  TNSLPTL N+  R I  NP+C FC  S E A+
Sbjct: 132 IWNMKVIPKIKLFFWRALTNSLPTLRNLFHRRIRANPVCSFCNSSDESAE 181

[Close]

BLAST of CsGy2G025035 vs. ExPASy TrEMBL
Match: A0A5A7V9E5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003320 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.30e-05
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 8   PKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRK-----SVEDAKLSKLNGSLERN 61
           PKVKL+MWK A ++L TL NI K+GI+ NP+CLFCR        +D    KL+G++ ++
Sbjct: 147 PKVKLTMWK-AISALATLDNICKKGIVANPICLFCRVCWSLGDYKDRNSLKLSGAVAKS 204

[Close]

BLAST of CsGy2G025035 vs. ExPASy TrEMBL
Match: A0A803PSK2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.34e-05
Identity = 49/197 (24.87%), Postives = 82/197 (41.62%), Query Frame = 0


Query: 1   MWRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAKLSKLNGSLER 60
           +W+ ++PPKVK  +W+  TNSLPT   ++ + +  NPLC  C  + E A    +  +  +
Sbjct: 306 LWQLKLPPKVKDFLWRVCTNSLPTRFQLSTKHVPINPLCPLCMAAPETALHVLVRCAFAQ 365

Query: 61  NYRGTKRVESGTRARLEELVGVYSLEAPVLWEKFQVIWSCGCRCLLGSGSSIRMRLDWIM 120
            Y    RV +         +G  ++     WE+    WS      +     + M L  I 
Sbjct: 366 QYWRQTRVTT---------LGTAAMTFSGWWEEGLNTWS------MAESLEVAMMLCLIW 425

Query: 121 KGLGALVEWFLTPPCWMRESLPWLVQTLEALSLDWYMARPTDVCGDWSG-------FLLP 180
           K    +V     P C   E L  L+  +  +  DWY A+  D+             +  P
Sbjct: 426 KVRHDMVWNSKQPTC--EEVL--LLTNINFV--DWYNAQKEDMDSSIDANRNLNEHWTPP 481

Query: 181 TFIALKLWLDFNVISSE 190
            F  +K+ +D  + +SE
Sbjct: 486 NFNQIKVNVDGTLFASE 481

[Close]

BLAST of CsGy2G025035 vs. ExPASy TrEMBL
Match: A0A6S7PEB1 (zf-RVT domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS39562 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.51e-05
Identity = 23/54 (42.59%), Postives = 32/54 (59.26%), Query Frame = 0


Query: 2  WRPRVPPKVKLSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVEDAKLSKLN 55
          W  RVP KV +  W+ A   +PT +N+ KRGI TNP+C+ C +  E  +   LN
Sbjct: 12 WNNRVPKKVNILAWRVAHGRIPTRANLLKRGIGTNPMCILCEQETETEEHLFLN 65

The following BLAST results are available for this feature:

BLAST of CsGy2G025035 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G025035 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63144.1	6.49e-144	100.00	hypothetical protein Csa_022313 [Cucumis sativus]	[more]
CAB4267113.1	1.02e-05	50.00	unnamed protein product [Prunus armeniaca]	[more]
KAA0062301.1	2.68e-05	47.46	hypothetical protein E6C27_scaffold154G00480 [Cucumis melo var. makuwa] >TYK2667...	[more]
CAB4112878.1	3.12e-05	42.59	unnamed protein product [Lactuca saligna]	[more]
KYP57286.1	3.16e-05	48.08	Putative ribonuclease H protein At1g65750 family [Cajanus cajan] >KYP57288.1 Put...	[more]

BLAST of CsGy2G025035 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ43	3.14e-144	100.00	zf-RVT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G404950 PE=4...	[more]
A0A6J5TTA1	4.94e-06	50.00	RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS96...	[more]
A0A5A7V9E5	1.30e-05	47.46	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A803PSK2	1.34e-05	24.87	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6S7PEB1	1.51e-05	42.59	zf-RVT domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS39562 ...	[more]

BLAST of CsGy2G025035 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 1..50 e-value: 5.6E-10 score: 39.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G025035.1	CsGy2G025035.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity