CsGy2G018670 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G018670
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	F-box protein GID2-like
Location	Gy14Chr2: 28268333 .. 28268887 (+)
RNA-Seq Expression	CsGy2G018670
Synteny	CsGy2G018670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACAGAATCAAGAAATTTAAATCAGTTTCAAACCAACAAGAACCAGATCACTCTCAACCACAACCCTCTACCTTTGCAAATTTAGACGACAATTTGTTGTTCGAGGTGTTTAAGCACGTCGATGCAAGGACACTGGCTACCGTCGCCGGCGTCAGCAAGCAGTGGTTCAAAACCGCTCACGACGAGCGCCTCTGGGAGCTTCTCTGCACCAAACACTGGACCAACCTTGGCTGTGCTAACCAACAGCTACGCTCCGTCGTTCTTGCGCTTGGTGGCTTCCGTCGATTACATTCTCTTTACCCATTTCCCCCTATGATTGGATGTAATCATCCATGGGGCAAAGATGAGGTTCATCTCTCCCTTTCTCTTCTCTCAATTCGTTACTACGAGAAGATGAAGTTTAAAAACAGACCCACATCTTGAAATCCCAAGTAATCCAAATGTAAGATCACACCAAATTGAGGGAGGTTCTCTCTGTGTTGAAATTGACATTATTATTGTTCCTTTTTCTTCTACTGTATCGGATTGGATGGATATGTTTGAATTTAG

mRNA sequence

ATGAACAACAGAATCAAGAAATTTAAATCAGTTTCAAACCAACAAGAACCAGATCACTCTCAACCACAACCCTCTACCTTTGCAAATTTAGACGACAATTTGTTGTTCGAGGTGTTTAAGCACGTCGATGCAAGGACACTGGCTACCGTCGCCGGCGTCAGCAAGCAGTGGTTCAAAACCGCTCACGACGAGCGCCTCTGGGAGCTTCTCTGCACCAAACACTGGACCAACCTTGGCTGTGCTAACCAACAGCTACGCTCCGTCGTTCTTGCGCTTGGTGGCTTCCGTCGATTACATTCTCTTTACCCATTTCCCCCTATGATTGGATGTAATCATCCATGGGGCAAAGATGAGGTTCATCTCTCCCTTTCTCTTCTCTCAATTCGTTACTACGAGAAGATGAAGTTTAAAAACAGACCCACATCTTGAAATCCCAAGTAATCCAAATGTAAGATCACACCAAATTGAGGGAGGTTCTCTCTGTGTTGAAATTGACATTATTATTGTTCCTTTTTCTTCTACTGTATCGGATTGGATGGATATGTTTGAATTTAG

Coding sequence (CDS)

ATGAACAACAGAATCAAGAAATTTAAATCAGTTTCAAACCAACAAGAACCAGATCACTCTCAACCACAACCCTCTACCTTTGCAAATTTAGACGACAATTTGTTGTTCGAGGTGTTTAAGCACGTCGATGCAAGGACACTGGCTACCGTCGCCGGCGTCAGCAAGCAGTGGTTCAAAACCGCTCACGACGAGCGCCTCTGGGAGCTTCTCTGCACCAAACACTGGACCAACCTTGGCTGTGCTAACCAACAGCTACGCTCCGTCGTTCTTGCGCTTGGTGGCTTCCGTCGATTACATTCTCTTTACCCATTTCCCCCTATGATTGGATGTAATCATCCATGGGGCAAAGATGAGGTTCATCTCTCCCTTTCTCTTCTCTCAATTCGTTACTACGAGAAGATGAAGTTTAAAAACAGACCCACATCTTGA

Protein sequence

MNNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS*

Homology

[Close]

BLAST of CsGy2G018670 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-39
Identity = 84/142 (59.15%), Postives = 101/142 (71.13%), Query Frame = 0


Query: 2   NNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTA 61
           N   KK KS   ++           F+NLD+NL++EV KHVDA+TLA  + VSK W KTA
Sbjct: 16  NETNKKMKSTEEEE---------IGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTA 75

Query: 62  HDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHP---WGKDE 121
            DERLWEL+CT+HWTN+GC   QLRSVVLALGGFRRLHSLY +P  +   +P   +GKDE
Sbjct: 76  QDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWP--LSKPNPRARFGKDE 135

Query: 122 VHLSLSLLSIRYYEKMKFKNRP 141
           + L+LSLLSIRYYEKM F  RP
Sbjct: 136 LKLTLSLLSIRYYEKMSFTKRP 146

[Close]

BLAST of CsGy2G018670 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.9e-23
Identity = 57/133 (42.86%), Postives = 79/133 (59.40%), Query Frame = 0


Query: 14  QQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTK 73
           Q   D  + +     +L ++L+FEV +  +ARTLA  A VS+ W + A DERLWE  C +
Sbjct: 60  QPPEDAGEGEQPRVPDLGEDLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVR 119

Query: 74  HWTNLGCANQQLRSVVLALGGFRRLHSLY---------PFPPMIGCNHP---WGKDEVHL 133
            W NLG + +QLR+VVL+LGGFRRLH++Y           P   G   P    G+D+V L
Sbjct: 120 EWANLGFSERQLRAVVLSLGGFRRLHAVYIRPLQWRGAGVPRQQGRRQPPVRLGRDQVQL 179

Query: 134 SLSLLSIRYYEKM 135
           SLSL SI +++ M
Sbjct: 180 SLSLFSIGFFQNM 192

[Close]

BLAST of CsGy2G018670 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.7e-10
Identity = 35/103 (33.98%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 33  NLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLAL 92
           ++L E+ + +D  +L + A V + W   A ++ +WE LC +  +     +  LRSVV AL
Sbjct: 33  DVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRSVVSAL 92

Query: 93  GGFRRLHSLYPFPPMIGC-NHPWGKDEVHLSLSLLSIRYYEKM 135
           GG+R L+ L   P +       W +D++ LSLSL  + YYE++
Sbjct: 93  GGYRCLYFLCIRPVLARLPKLLWTRDQLQLSLSLYCVHYYERL 133

[Close]

BLAST of CsGy2G018670 vs. NCBI nr
Match: XP_004143017.1 (F-box protein GID2 [Cucumis sativus] >KGN62476.1 hypothetical protein Csa_018769 [Cucumis sativus])

HSP 1 Score: 301 bits (771), Expect = 2.56e-103
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MNNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKT 60
           MNNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKT
Sbjct: 1   MNNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKT 60

Query: 61  AHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEVH 120
           AHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEVH
Sbjct: 61  AHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEVH 120

Query: 121 LSLSLLSIRYYEKMKFKNRPTS 142
           LSLSLLSIRYYEKMKFKNRPTS
Sbjct: 121 LSLSLLSIRYYEKMKFKNRPTS 142

[Close]

BLAST of CsGy2G018670 vs. NCBI nr
Match: XP_008445558.1 (PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0060929.1 F-box protein GID2-like [Cucumis melo var. makuwa])

HSP 1 Score: 287 bits (734), Expect = 1.17e-97
Identity = 137/143 (95.80%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MNNRIKKFKSVSNQQE-PDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFK 60
           MNN+IKKFKS SNQQE PD SQPQPSTFANLDDNLLFEVFKHVDARTLAT AGV+KQWFK
Sbjct: 1   MNNKIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFK 60

Query: 61  TAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEV 120
           TAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEV
Sbjct: 61  TAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEV 120

Query: 121 HLSLSLLSIRYYEKMKFKNRPTS 142
           HLSLSLLSIRYYEKMKFKNRPTS
Sbjct: 121 HLSLSLLSIRYYEKMKFKNRPTS 143

[Close]

BLAST of CsGy2G018670 vs. NCBI nr
Match: KAG6598351.1 (F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029322.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 234 bits (597), Expect = 7.68e-77
Identity = 115/140 (82.14%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 5   IKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDE 64
           +KK KSVS +Q+     P  S FANLDDNLLFEVFKHVDARTLAT AGVSKQW+KTAHDE
Sbjct: 1   MKKIKSVSEEQQSP--PPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDE 60

Query: 65  RLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNH--PWGKDEVHLS 124
            LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPFPP+IG     PWGKDE+HLS
Sbjct: 61  WLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLS 120

Query: 125 LSLLSIRYYEKMKFKNRPTS 142
           LSLLSIRYYEKMKFKNRPTS
Sbjct: 121 LSLLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of CsGy2G018670 vs. NCBI nr
Match: XP_023522812.1 (F-box protein GID2-like [Cucurbita pepo subsp. pepo] >XP_023547045.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233 bits (595), Expect = 1.60e-76
Identity = 117/143 (81.82%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 5   IKKFKSVSNQQEPDHSQPQPST---FANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTA 64
           +KK KSVS +Q+     P PS+   FANLDDNLLFEVFKHVDARTLAT AGVSKQW+KTA
Sbjct: 1   MKKIKSVSQEQQ----SPPPSSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTA 60

Query: 65  HDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNH--PWGKDEV 124
           HDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPFPP+IG     PWGKDEV
Sbjct: 61  HDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASCIPWGKDEV 120

Query: 125 HLSLSLLSIRYYEKMKFKNRPTS 142
           HLSLSLLSIRYYEKMKFKNRPTS
Sbjct: 121 HLSLSLLSIRYYEKMKFKNRPTS 139

[Close]

BLAST of CsGy2G018670 vs. NCBI nr
Match: XP_022962352.1 (F-box protein GID2-like [Cucurbita moschata])

HSP 1 Score: 231 bits (589), Expect = 1.27e-75
Identity = 114/140 (81.43%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 5   IKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDE 64
           +KK KSVS +Q+     P  S FANLDDNLLFEVFKHVDARTLAT AGVSKQW KTAHDE
Sbjct: 1   MKKIKSVSEEQQSP--PPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWCKTAHDE 60

Query: 65  RLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNH--PWGKDEVHLS 124
            LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPFPP++G     PWGKDE+HLS
Sbjct: 61  WLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIMGSASCIPWGKDELHLS 120

Query: 125 LSLLSIRYYEKMKFKNRPTS 142
           LSLLSIRYYEKMKFKNRPTS
Sbjct: 121 LSLLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of CsGy2G018670 vs. ExPASy TrEMBL
Match: A0A0A0LR75 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G355020 PE=4 SV=1)

HSP 1 Score: 301 bits (771), Expect = 1.24e-103
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MNNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKT 60
           MNNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKT
Sbjct: 1   MNNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKT 60

Query: 61  AHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEVH 120
           AHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEVH
Sbjct: 61  AHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEVH 120

Query: 121 LSLSLLSIRYYEKMKFKNRPTS 142
           LSLSLLSIRYYEKMKFKNRPTS
Sbjct: 121 LSLSLLSIRYYEKMKFKNRPTS 142

[Close]

BLAST of CsGy2G018670 vs. ExPASy TrEMBL
Match: A0A5A7V5E1 (F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00620 PE=4 SV=1)

HSP 1 Score: 287 bits (734), Expect = 5.66e-98
Identity = 137/143 (95.80%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MNNRIKKFKSVSNQQE-PDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFK 60
           MNN+IKKFKS SNQQE PD SQPQPSTFANLDDNLLFEVFKHVDARTLAT AGV+KQWFK
Sbjct: 1   MNNKIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFK 60

Query: 61  TAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEV 120
           TAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEV
Sbjct: 61  TAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEV 120

Query: 121 HLSLSLLSIRYYEKMKFKNRPTS 142
           HLSLSLLSIRYYEKMKFKNRPTS
Sbjct: 121 HLSLSLLSIRYYEKMKFKNRPTS 143

[Close]

BLAST of CsGy2G018670 vs. ExPASy TrEMBL
Match: A0A1S3BDV6 (F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103488538 PE=4 SV=1)

HSP 1 Score: 287 bits (734), Expect = 5.66e-98
Identity = 137/143 (95.80%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MNNRIKKFKSVSNQQE-PDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFK 60
           MNN+IKKFKS SNQQE PD SQPQPSTFANLDDNLLFEVFKHVDARTLAT AGV+KQWFK
Sbjct: 1   MNNKIKKFKSDSNQQEKPDESQPQPSTFANLDDNLLFEVFKHVDARTLATAAGVNKQWFK 60

Query: 61  TAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEV 120
           TAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEV
Sbjct: 61  TAHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHPWGKDEV 120

Query: 121 HLSLSLLSIRYYEKMKFKNRPTS 142
           HLSLSLLSIRYYEKMKFKNRPTS
Sbjct: 121 HLSLSLLSIRYYEKMKFKNRPTS 143

[Close]

BLAST of CsGy2G018670 vs. ExPASy TrEMBL
Match: A0A6J1HCI1 (F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111462823 PE=4 SV=1)

HSP 1 Score: 231 bits (589), Expect = 6.17e-76
Identity = 114/140 (81.43%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 5   IKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDE 64
           +KK KSVS +Q+     P  S FANLDDNLLFEVFKHVDARTLAT AGVSKQW KTAHDE
Sbjct: 1   MKKIKSVSEEQQSP--PPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWCKTAHDE 60

Query: 65  RLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNH--PWGKDEVHLS 124
            LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPFPP++G     PWGKDE+HLS
Sbjct: 61  WLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIMGSASCIPWGKDELHLS 120

Query: 125 LSLLSIRYYEKMKFKNRPTS 142
           LSLLSIRYYEKMKFKNRPTS
Sbjct: 121 LSLLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of CsGy2G018670 vs. ExPASy TrEMBL
Match: A0A6J1K7I7 (F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111491869 PE=4 SV=1)

HSP 1 Score: 227 bits (578), Expect = 2.93e-74
Identity = 113/140 (80.71%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 5   IKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAHDE 64
           +KK KSVS  QE     P  S FANLDDNLLFEVFKHVDARTLAT +GVSKQW+KTAHDE
Sbjct: 1   MKKIKSVS--QEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATASGVSKQWYKTAHDE 60

Query: 65  RLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNH--PWGKDEVHLS 124
            LWELLCTKHW N+GCAN QLRSVVLALGGFRRLHSLYPFPP+IG      WGK EVHLS
Sbjct: 61  WLWELLCTKHWANIGCANPQLRSVVLALGGFRRLHSLYPFPPIIGSASCIAWGKGEVHLS 120

Query: 125 LSLLSIRYYEKMKFKNRPTS 142
           LSLLSIRYYEKMKFKNRPTS
Sbjct: 121 LSLLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of CsGy2G018670 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 162.9 bits (411), Expect = 1.9e-40
Identity = 84/142 (59.15%), Postives = 101/142 (71.13%), Query Frame = 0


Query: 2   NNRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTA 61
           N   KK KS   ++           F+NLD+NL++EV KHVDA+TLA  + VSK W KTA
Sbjct: 16  NETNKKMKSTEEEE---------IGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTA 75

Query: 62  HDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIGCNHP---WGKDE 121
            DERLWEL+CT+HWTN+GC   QLRSVVLALGGFRRLHSLY +P  +   +P   +GKDE
Sbjct: 76  QDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWP--LSKPNPRARFGKDE 135

Query: 122 VHLSLSLLSIRYYEKMKFKNRP 141
           + L+LSLLSIRYYEKM F  RP
Sbjct: 136 LKLTLSLLSIRYYEKMSFTKRP 146

[Close]

BLAST of CsGy2G018670 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-11
Identity = 35/103 (33.98%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 33  NLLFEVFKHVDARTLATVAGVSKQWFKTAHDERLWELLCTKHWTNLGCANQQLRSVVLAL 92
           ++L E+ + +D  +L + A V + W   A ++ +WE LC +  +     +  LRSVV AL
Sbjct: 33  DVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRSVVSAL 92

Query: 93  GGFRRLHSLYPFPPMIGC-NHPWGKDEVHLSLSLLSIRYYEKM 135
           GG+R L+ L   P +       W +D++ LSLSL  + YYE++
Sbjct: 93  GGYRCLYFLCIRPVLARLPKLLWTRDQLQLSLSLYCVHYYERL 133

The following BLAST results are available for this feature:

BLAST of CsGy2G018670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STX3	2.6e-39	59.15	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	5.9e-23	42.86	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9LUB6	9.7e-10	33.98	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]

BLAST of CsGy2G018670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143017.1	2.56e-103	100.00	F-box protein GID2 [Cucumis sativus] >KGN62476.1 hypothetical protein Csa_018769...	[more]
XP_008445558.1	1.17e-97	95.80	PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0060929.1 F-box protein GI...	[more]
KAG6598351.1	7.68e-77	82.14	F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029322....	[more]
XP_023522812.1	1.60e-76	81.82	F-box protein GID2-like [Cucurbita pepo subsp. pepo] >XP_023547045.1 F-box prote...	[more]
XP_022962352.1	1.27e-75	81.43	F-box protein GID2-like [Cucurbita moschata]	[more]

BLAST of CsGy2G018670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR75	1.24e-103	100.00	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G355020 PE=4 ...	[more]
A0A5A7V5E1	5.66e-98	95.80	F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BDV6	5.66e-98	95.80	F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103488538 PE=4 SV=1	[more]
A0A6J1HCI1	6.17e-76	81.43	F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111462823 PE=4 SV=1	[more]
A0A6J1K7I7	2.93e-74	80.71	F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111491869 PE=4 SV=1	[more]

BLAST of CsGy2G018670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24210.1	1.9e-40	59.15	F-box family protein	[more]
AT5G48170.1	6.9e-11	33.98	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 30..70 e-value: 0.0027 score: 27.0
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 26..71 e-value: 2.0E-6 score: 27.5
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 24..70 score: 10.053852
None	No IPR available	GENE3D	1.20.1280.50		coord: 7..117 e-value: 2.5E-11 score: 45.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 111..137
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 7..105
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 111..137
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 7..105
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 21..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G018670.1	CsGy2G018670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding