CsGy2G016325 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G016325
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr2: 16341498 .. 16341698 (+)
RNA-Seq Expression	CsGy2G016325
Synteny	CsGy2G016325

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCAATCGACGCTGAGTCGTCAAATCGGAGAAGAAAACGCCATGCATCACCAAAAACACAAATTGACGAATACGATTCCCGATTCCGGTTTTTTTCTTCTTCTCTCCTCGTTTCAATTCCCATTTTCTGTGGGCTTCGTGATCGGGATTTGTTTATTTTCGATCGAACCCAGATACCGAGATTGGATTTTTTTTAA

mRNA sequence

ATGTCAGCAATCGACGCTGAGTCGTCAAATCGGAGAAGAAAACGCCATGCATCACCAAAAACACAAATTGACGAATACGATTCCCGATTCCGGTTTTTTTCTTCTTCTCTCCTCGTTTCAATTCCCATTTTCTGTGGGCTTCGTGATCGGGATTTGTTTATTTTCGATCGAACCCAGATACCGAGATTGGATTTTTTTTAA

Coding sequence (CDS)

ATGTCAGCAATCGACGCTGAGTCGTCAAATCGGAGAAGAAAACGCCATGCATCACCAAAAACACAAATTGACGAATACGATTCCCGATTCCGGTTTTTTTCTTCTTCTCTCCTCGTTTCAATTCCCATTTTCTGTGGGCTTCGTGATCGGGATTTGTTTATTTTCGATCGAACCCAGATACCGAGATTGGATTTTTTTTAA

Protein sequence

MSAIDAESSNRRRKRHASPKTQIDEYDSRFRFFSSSLLVSIPIFCGLRDRDLFIFDRTQIPRLDFF*

Homology

[Close]

BLAST of CsGy2G016325 vs. NCBI nr
Match: KGN62189.1 (hypothetical protein Csa_006827 [Cucumis sativus])

HSP 1 Score: 133 bits (334), Expect = 4.72e-39
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MSAIDAESSNRRRKRHASPKTQIDEYDSRFRFFSSSLLVSIPIFCGLRDRDLFIFDRTQI 60
          MSAIDAESSNRRRKRHASPKTQIDEYDSRFRFFSSSLLVSIPIFCGLRDRDLFIFDRTQI
Sbjct: 1  MSAIDAESSNRRRKRHASPKTQIDEYDSRFRFFSSSLLVSIPIFCGLRDRDLFIFDRTQI 60

Query: 61 PRLDFF 66
          PRLDFF
Sbjct: 61 PRLDFF 66

[Close]

BLAST of CsGy2G016325 vs. ExPASy TrEMBL
Match: A0A0A0LMC5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G324440 PE=4 SV=1)

HSP 1 Score: 133 bits (334), Expect = 2.29e-39
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MSAIDAESSNRRRKRHASPKTQIDEYDSRFRFFSSSLLVSIPIFCGLRDRDLFIFDRTQI 60
          MSAIDAESSNRRRKRHASPKTQIDEYDSRFRFFSSSLLVSIPIFCGLRDRDLFIFDRTQI
Sbjct: 1  MSAIDAESSNRRRKRHASPKTQIDEYDSRFRFFSSSLLVSIPIFCGLRDRDLFIFDRTQI 60

Query: 61 PRLDFF 66
          PRLDFF
Sbjct: 61 PRLDFF 66

The following BLAST results are available for this feature:

BLAST of CsGy2G016325 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G016325 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62189.1	4.72e-39	100.00	hypothetical protein Csa_006827 [Cucumis sativus]	[more]

BLAST of CsGy2G016325 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMC5	2.29e-39	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G324440 PE=4 SV=1	[more]

BLAST of CsGy2G016325 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G016325.1	CsGy2G016325.1	mRNA