CsGy2G014470 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G014470
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	C2H2-type domain-containing protein
Location	Gy14Chr2: 14661374 .. 14661864 (+)
RNA-Seq Expression	CsGy2G014470
Synteny	CsGy2G014470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGACAAATCTCTTCCTTATAACCTTCGACTAAGGAAAGATCACAAGTCTTCTTCTCCAACTGAACACTCCAAAACTCATAAACATGACAGAGATTTTCAGGTTTCATTATCATTATTCTTCTTTCTTTATTCTTTATTATTGTTTGAGTTATTATTAATTGTTAATATCAAATTTAGGAAAAGGCAAGTGATGATCAAATATATGTAAGTCATTTAATTGTGGATTATCGATGTGAAAAATGTGGATGCTCTTTTGATATTGAATCCTCTCTTAGCTCACACCATTGTAAAGTAAGCTTTTTTTTTTTAGTTTTTAATTTTTTTGAAATTTTGATATATTGATAAGTTTATTATAATAATTTTTTTTAGCAGAATAAAAATGAGAGAGAGGCAATGGAAATTGAAGGACATGGAATTTTGGGAGAGAACAAATCTTTCAGAAAAAAAAGCAGGAAGGGGGTACCAAGAAGAGCACCTTTCTTTTAG

mRNA sequence

ATGGATGACAAATCTCTTCCTTATAACCTTCGACTAAGGAAAGATCACAAGTCTTCTTCTCCAACTGAACACTCCAAAACTCATAAACATGACAGAGATTTTCAGGAAAAGGCAAGTGATGATCAAATATATGTAAGTCATTTAATTGTGGATTATCGATGTGAAAAATGTGGATGCTCTTTTGATATTGAATCCTCTCTTAGCTCACACCATTGTAAAAATAAAAATGAGAGAGAGGCAATGGAAATTGAAGGACATGGAATTTTGGGAGAGAACAAATCTTTCAGAAAAAAAAGCAGGAAGGGGGTACCAAGAAGAGCACCTTTCTTTTAG

Coding sequence (CDS)

ATGGATGACAAATCTCTTCCTTATAACCTTCGACTAAGGAAAGATCACAAGTCTTCTTCTCCAACTGAACACTCCAAAACTCATAAACATGACAGAGATTTTCAGGAAAAGGCAAGTGATGATCAAATATATGTAAGTCATTTAATTGTGGATTATCGATGTGAAAAATGTGGATGCTCTTTTGATATTGAATCCTCTCTTAGCTCACACCATTGTAAAAATAAAAATGAGAGAGAGGCAATGGAAATTGAAGGACATGGAATTTTGGGAGAGAACAAATCTTTCAGAAAAAAAAGCAGGAAGGGGGTACCAAGAAGAGCACCTTTCTTTTAG

Protein sequence

MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCSFDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKGVPRRAPFF*

Homology

[Close]

BLAST of CsGy2G014470 vs. NCBI nr
Match: KAE8651931.1 (hypothetical protein Csa_006531, partial [Cucumis sativus])

HSP 1 Score: 219 bits (558), Expect = 6.66e-72
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60
           MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS
Sbjct: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60

Query: 61  FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKGVPRRA 107
           FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKGVPRRA
Sbjct: 61  FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKGVPRRA 107

[Close]

BLAST of CsGy2G014470 vs. NCBI nr
Match: XP_023511836.1 (uncharacterized protein LOC111776737 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122 bits (307), Expect = 1.21e-33
Identity = 66/113 (58.41%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKH-DRDFQEKASDDQIYVSHLIVDYRCEKCGC 60
           MDDKS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGC
Sbjct: 1   MDDKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGC 60

Query: 61  SFDIESSLSSHHCKNKN--EREAMEIEGHGILGENKSFRKKSRKGVPRRAPFF 110
           SFD++ SL SHHCKN N  E+EAME E    LG++KS RK++RKG+P RAPFF
Sbjct: 61  SFDLQPSLRSHHCKNNNKSEKEAMENEVDEGLGKDKSLRKRTRKGIPTRAPFF 107

[Close]

BLAST of CsGy2G014470 vs. NCBI nr
Match: XP_022928048.1 (uncharacterized protein LOC111434950 [Cucurbita moschata])

HSP 1 Score: 121 bits (304), Expect = 3.46e-33
Identity = 65/113 (57.52%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKH-DRDFQEKASDDQIYVSHLIVDYRCEKCGC 60
           MD+KS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGC
Sbjct: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGC 60

Query: 61  SFDIESSLSSHHCK--NKNEREAMEIEGHGILGENKSFRKKSRKGVPRRAPFF 110
           SFD++ SL SHHCK  NK+EREA E E    LG++KS RK++RKG+P RAPFF
Sbjct: 61  SFDLQPSLRSHHCKSNNKSEREATENEVEEALGKDKSLRKRTRKGIPTRAPFF 107

[Close]

BLAST of CsGy2G014470 vs. NCBI nr
Match: KAG6571418.1 (hypothetical protein SDJN03_30333, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120 bits (302), Expect = 6.97e-33
Identity = 65/112 (58.04%), Postives = 83/112 (74.11%), Query Frame = 0


Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKH-DRDFQEKASDDQIYVSHLIVDYRCEKCGC 60
           MDDKS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGC
Sbjct: 1   MDDKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGC 60

Query: 61  SFDIESSLSSHHCKNKN--EREAMEIEGHGILGENKSFRKKSRKGVPRRAPF 109
           SFD++ SL SHHCKN N  E+EAME E    LG++KS RK++RKG+P RAPF
Sbjct: 61  SFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGIPTRAPF 106

[Close]

BLAST of CsGy2G014470 vs. NCBI nr
Match: KAG7011182.1 (hypothetical protein SDJN02_27980, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119 bits (298), Expect = 2.83e-32
Identity = 64/112 (57.14%), Postives = 83/112 (74.11%), Query Frame = 0


Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKH-DRDFQEKASDDQIYVSHLIVDYRCEKCGC 60
           MD+KS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGC
Sbjct: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGC 60

Query: 61  SFDIESSLSSHHCKNKN--EREAMEIEGHGILGENKSFRKKSRKGVPRRAPF 109
           SFD++ SL SHHCKN N  E+EAME E    LG++KS RK++RKG+P RAPF
Sbjct: 61  SFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGIPTRAPF 106

[Close]

BLAST of CsGy2G014470 vs. ExPASy TrEMBL
Match: A0A0A0LQ06 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G287130 PE=4 SV=1)

HSP 1 Score: 226 bits (577), Expect = 4.48e-75
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60
           MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS
Sbjct: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60

Query: 61  FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKGVPRRAPFF 110
           FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKGVPRRAPFF
Sbjct: 61  FDIESSLSSHHCKNKNEREAMEIEGHGILGENKSFRKKSRKGVPRRAPFF 110

[Close]

BLAST of CsGy2G014470 vs. ExPASy TrEMBL
Match: A0A6J1EMR9 (uncharacterized protein LOC111434950 OS=Cucurbita moschata OX=3662 GN=LOC111434950 PE=4 SV=1)

HSP 1 Score: 121 bits (304), Expect = 1.67e-33
Identity = 65/113 (57.52%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKH-DRDFQEKASDDQIYVSHLIVDYRCEKCGC 60
           MD+KS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGC
Sbjct: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGC 60

Query: 61  SFDIESSLSSHHCK--NKNEREAMEIEGHGILGENKSFRKKSRKGVPRRAPFF 110
           SFD++ SL SHHCK  NK+EREA E E    LG++KS RK++RKG+P RAPFF
Sbjct: 61  SFDLQPSLRSHHCKSNNKSEREATENEVEEALGKDKSLRKRTRKGIPTRAPFF 107

[Close]

BLAST of CsGy2G014470 vs. ExPASy TrEMBL
Match: A0A6J1D739 (uncharacterized protein LOC111017959 OS=Momordica charantia OX=3673 GN=LOC111017959 PE=4 SV=1)

HSP 1 Score: 105 bits (263), Expect = 3.40e-27
Identity = 64/118 (54.24%), Postives = 79/118 (66.95%), Query Frame = 0


Query: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTH-KHDRDFQEKASDDQIYVSHLIVDYRCEKCGC 60
           MDDKSLPYNLRLRK   +S+PTE SK + KH+RDFQEK  ++      + ++ RCEKCGC
Sbjct: 1   MDDKSLPYNLRLRK---ASAPTEPSKINQKHERDFQEKGDEE------IGLEQRCEKCGC 60

Query: 61  SFDIESSLSSHHCKNKNEREAMEIEGHGI---LGEN----KSFRKKSRKGVPRRAPFF 110
            F IE SL SHHCK KN+     +E   +   L +N    KSFRK+SRKG+P RAP F
Sbjct: 61  RFGIEISLHSHHCKCKNKMSEEGMENQVVPEMLDQNNNNKKSFRKRSRKGIPTRAPLF 109

The following BLAST results are available for this feature:

BLAST of CsGy2G014470 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G014470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651931.1	6.66e-72	100.00	hypothetical protein Csa_006531, partial [Cucumis sativus]	[more]
XP_023511836.1	1.21e-33	58.41	uncharacterized protein LOC111776737 [Cucurbita pepo subsp. pepo]	[more]
XP_022928048.1	3.46e-33	57.52	uncharacterized protein LOC111434950 [Cucurbita moschata]	[more]
KAG6571418.1	6.97e-33	58.04	hypothetical protein SDJN03_30333, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7011182.1	2.83e-32	57.14	hypothetical protein SDJN02_27980, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CsGy2G014470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ06	4.48e-75	100.00	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G287130 P...	[more]
A0A6J1EMR9	1.67e-33	57.52	uncharacterized protein LOC111434950 OS=Cucurbita moschata OX=3662 GN=LOC1114349...	[more]
A0A6J1D739	3.40e-27	54.24	uncharacterized protein LOC111017959 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of CsGy2G014470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 52..79 score: 10.325359

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G014470.1	CsGy2G014470.1	mRNA