CsGy2G013080 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G013080
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Transmembrane protein
Location	Gy14Chr2: 12864851 .. 12865228 (-)
RNA-Seq Expression	CsGy2G013080
Synteny	CsGy2G013080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGTTTTTATCCAAAAAGAAGAGGTCCAGAGTGGAAACGAGGATTGACAGGCACAGGCCAAACCCTAAGCTCTGTCTCTCCTCCACCAATTCAATTGCTCATCATTTTTGGCATTGTCATTGTGTTGCTATGGTTTTCTCAGTTCAATGCTGGCCATGAAGCTCAATTGAATAGAAGTTTTCAGCTGTTTCTTTTCTTGTTGCCCATCTTCGTTATTTTCTTCATGTATTCATATTCCTCCAGTCGACTTATCAACTTCGGATTTCGCCGATCACCAACCGGGTTGGCTCAACGAGGTGCCTCGCCTTGGACTATTGCCATTTTGGTCCTTCTCATTCTGGTTTTGCTTTATTATCAATCCTCATTCCATTGA

mRNA sequence

ATGGATTGTTTTTATCCAAAAAGAAGAGGTCCAGAGTGGAAACGAGGATTGACAGGCACAGGCCAAACCCTAAGCTCTGTCTCTCCTCCACCAATTCAATTGCTCATCATTTTTGGCATTGTCATTGTGTTGCTATGGTTTTCTCAGTTCAATGCTGGCCATGAAGCTCAATTGAATAGAAGTTTTCAGCTGTTTCTTTTCTTGTTGCCCATCTTCGTTATTTTCTTCATGTATTCATATTCCTCCAGTCGACTTATCAACTTCGGATTTCGCCGATCACCAACCGGGTTGGCTCAACGAGGTGCCTCGCCTTGGACTATTGCCATTTTGGTCCTTCTCATTCTGGTTTTGCTTTATTATCAATCCTCATTCCATTGA

Coding sequence (CDS)

ATGGATTGTTTTTATCCAAAAAGAAGAGGTCCAGAGTGGAAACGAGGATTGACAGGCACAGGCCAAACCCTAAGCTCTGTCTCTCCTCCACCAATTCAATTGCTCATCATTTTTGGCATTGTCATTGTGTTGCTATGGTTTTCTCAGTTCAATGCTGGCCATGAAGCTCAATTGAATAGAAGTTTTCAGCTGTTTCTTTTCTTGTTGCCCATCTTCGTTATTTTCTTCATGTATTCATATTCCTCCAGTCGACTTATCAACTTCGGATTTCGCCGATCACCAACCGGGTTGGCTCAACGAGGTGCCTCGCCTTGGACTATTGCCATTTTGGTCCTTCTCATTCTGGTTTTGCTTTATTATCAATCCTCATTCCATTGA

Protein sequence

MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNRSFQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILVLLYYQSSFH*

Homology

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BLAST of CsGy2G013080 vs. NCBI nr
Match: KGN61894.1 (hypothetical protein Csa_005908 [Cucumis sativus])

HSP 1 Score: 253 bits (645), Expect = 1.19e-84
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR 60
           MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR
Sbjct: 1   MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR 60

Query: 61  SFQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILVLLYY 120
           SFQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILVLLYY
Sbjct: 61  SFQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILVLLYY 120

Query: 121 QSSFH 125
           QSSFH
Sbjct: 121 QSSFH 125

[Close]

BLAST of CsGy2G013080 vs. NCBI nr
Match: KAG7010871.1 (hypothetical protein SDJN02_27669, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142 bits (359), Expect = 4.86e-41
Identity = 84/129 (65.12%), Postives = 93/129 (72.09%), Query Frame = 0


Query: 1   MDCFYPKRRGPEWKRGLTGTGQTLS-SVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLN 60
           M+   PKRRGPEWK+    TGQTL  SVS PP QLL IFGIVIVLLWFSQ   G++ Q++
Sbjct: 1   MEWLEPKRRGPEWKQ--EWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMH 60

Query: 61  RS---FQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILV 120
           RS   FQL LFLLPI VIFFM SYS   LIN    RS TG  +RGASP TI ILV LILV
Sbjct: 61  RSASNFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRRGASPLTITILVSLILV 120

Query: 121 LLYYQSSFH 125
           LLY++ SFH
Sbjct: 121 LLYFRPSFH 127

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BLAST of CsGy2G013080 vs. NCBI nr
Match: KAF3434655.1 (hypothetical protein FNV43_RR21740 [Rhamnella rubrinervis])

HSP 1 Score: 141 bits (356), Expect = 1.77e-40
Identity = 80/129 (62.02%), Postives = 97/129 (75.19%), Query Frame = 0


Query: 1   MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR 60
           M+ FYPKRRGPEWK+G TG  QTL+S+S PP+ LL IFGIVIVLLWFSQ+  G++AQL +
Sbjct: 1   MEWFYPKRRGPEWKQGWTG--QTLTSISAPPLHLLTIFGIVIVLLWFSQYT-GYKAQLQQ 60

Query: 61  S---FQLFLFLLPIFVIFFMYSYSSSR-LINFGFRRSPTGLAQRGASPWTIAILVLLILV 120
           +   FQLFL +LPI +IFFM  YSSS    NF  RR P    + G SPW +AIL++L+LV
Sbjct: 61  TTVNFQLFLMVLPILLIFFMALYSSSGGWFNFQLRR-PEAFHRAGGSPWGVAILLVLLLV 120

Query: 121 LLYYQSSFH 125
           LL YQSSFH
Sbjct: 121 LLSYQSSFH 125

[Close]

BLAST of CsGy2G013080 vs. NCBI nr
Match: PON55102.1 (Transmembrane protein [Parasponia andersonii])

HSP 1 Score: 134 bits (338), Expect = 1.06e-37
Identity = 75/130 (57.69%), Postives = 92/130 (70.77%), Query Frame = 0


Query: 1   MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR 60
           M  FYPKRRGP+WK+G T   QT++SVS P   LL IF IV+VLLW SQ+  GH+AQL +
Sbjct: 1   MGWFYPKRRGPQWKQGWTS--QTVASVSAPSFHLLAIFSIVMVLLWLSQYT-GHKAQLQQ 60

Query: 61  S---FQLFLFLLPIFVIFFMYSYSSSRLINFGFRRS--PTGLAQRGASPWTIAILVLLIL 120
           +   FQLF+FLLP+ +I FM SYSS  L NF FRR    T +   G+SPW +A+ V L+L
Sbjct: 61  TAVNFQLFVFLLPVLLIVFMASYSSCGLFNFRFRRPRPDTPMQPAGSSPWGVAVFVALLL 120

Query: 121 VLLYYQSSFH 125
           VLL YQSSFH
Sbjct: 121 VLLSYQSSFH 127

[Close]

BLAST of CsGy2G013080 vs. NCBI nr
Match: PON83413.1 (Transmembrane protein [Trema orientale])

HSP 1 Score: 134 bits (336), Expect = 2.12e-37
Identity = 74/130 (56.92%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 1   MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR 60
           M+ FYPKRRGP+WK+G T   QT++S+S P   LL IF IV+VLLW SQ+  G++AQL +
Sbjct: 1   MEWFYPKRRGPQWKQGWTS--QTVASISAPSFHLLAIFSIVMVLLWLSQYT-GYKAQLQQ 60

Query: 61  S---FQLFLFLLPIFVIFFMYSYSSSRLINFGFRRS--PTGLAQRGASPWTIAILVLLIL 120
           +   FQLF+FLLP+ +I FM SYSSS L NF FRR    T +   G+SPW +A  V L+L
Sbjct: 61  TAVNFQLFMFLLPVLLIVFMASYSSSGLFNFRFRRPRPDTPMQLAGSSPWGVAFFVALLL 120

Query: 121 VLLYYQSSFH 125
           VLL YQSSFH
Sbjct: 121 VLLSYQSSFH 127

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BLAST of CsGy2G013080 vs. ExPASy TrEMBL
Match: A0A0A0LLH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263890 PE=4 SV=1)

HSP 1 Score: 253 bits (645), Expect = 5.77e-85
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR 60
           MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR
Sbjct: 1   MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR 60

Query: 61  SFQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILVLLYY 120
           SFQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILVLLYY
Sbjct: 61  SFQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILVLLYY 120

Query: 121 QSSFH 125
           QSSFH
Sbjct: 121 QSSFH 125

[Close]

BLAST of CsGy2G013080 vs. ExPASy TrEMBL
Match: A0A2P5C233 (Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_190300 PE=4 SV=1)

HSP 1 Score: 134 bits (338), Expect = 5.11e-38
Identity = 75/130 (57.69%), Postives = 92/130 (70.77%), Query Frame = 0


Query: 1   MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR 60
           M  FYPKRRGP+WK+G T   QT++SVS P   LL IF IV+VLLW SQ+  GH+AQL +
Sbjct: 1   MGWFYPKRRGPQWKQGWTS--QTVASVSAPSFHLLAIFSIVMVLLWLSQYT-GHKAQLQQ 60

Query: 61  S---FQLFLFLLPIFVIFFMYSYSSSRLINFGFRRS--PTGLAQRGASPWTIAILVLLIL 120
           +   FQLF+FLLP+ +I FM SYSS  L NF FRR    T +   G+SPW +A+ V L+L
Sbjct: 61  TAVNFQLFVFLLPVLLIVFMASYSSCGLFNFRFRRPRPDTPMQPAGSSPWGVAVFVALLL 120

Query: 121 VLLYYQSSFH 125
           VLL YQSSFH
Sbjct: 121 VLLSYQSSFH 127

[Close]

BLAST of CsGy2G013080 vs. ExPASy TrEMBL
Match: A0A2P5ED06 (Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_208280 PE=4 SV=1)

HSP 1 Score: 134 bits (336), Expect = 1.03e-37
Identity = 74/130 (56.92%), Postives = 93/130 (71.54%), Query Frame = 0


Query: 1   MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR 60
           M+ FYPKRRGP+WK+G T   QT++S+S P   LL IF IV+VLLW SQ+  G++AQL +
Sbjct: 1   MEWFYPKRRGPQWKQGWTS--QTVASISAPSFHLLAIFSIVMVLLWLSQYT-GYKAQLQQ 60

Query: 61  S---FQLFLFLLPIFVIFFMYSYSSSRLINFGFRRS--PTGLAQRGASPWTIAILVLLIL 120
           +   FQLF+FLLP+ +I FM SYSSS L NF FRR    T +   G+SPW +A  V L+L
Sbjct: 61  TAVNFQLFMFLLPVLLIVFMASYSSSGLFNFRFRRPRPDTPMQLAGSSPWGVAFFVALLL 120

Query: 121 VLLYYQSSFH 125
           VLL YQSSFH
Sbjct: 121 VLLSYQSSFH 127

[Close]

BLAST of CsGy2G013080 vs. ExPASy TrEMBL
Match: W9QKI2 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024950 PE=4 SV=1)

HSP 1 Score: 133 bits (334), Expect = 2.20e-37
Identity = 74/132 (56.06%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 1   MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR 60
           M+ FYPKRRGPEWK+G T   QT++S+SPPP  LL IF IV+VLLW SQ+  G++AQL +
Sbjct: 1   MEWFYPKRRGPEWKQGWTS--QTMASISPPPFHLLTIFAIVMVLLWLSQYT-GYKAQLQQ 60

Query: 61  S---FQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQR----GASPWTIAILVLL 120
           +   FQ FLFL PI +I FM SYSSS   NF  RR     + +    G+SPW +AI V+L
Sbjct: 61  TTANFQFFLFLFPILLILFMASYSSSWWPNFQLRRVRQEASMQPVAAGSSPWGVAIFVVL 120

Query: 121 ILVLLYYQSSFH 125
           +L+LL YQSSFH
Sbjct: 121 LLILLSYQSSFH 129

[Close]

BLAST of CsGy2G013080 vs. ExPASy TrEMBL
Match: B9H148 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G167800 PE=4 SV=2)

HSP 1 Score: 132 bits (333), Expect = 2.94e-37
Identity = 75/130 (57.69%), Postives = 92/130 (70.77%), Query Frame = 0


Query: 1   MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR 60
           M+ FYPKRRGPEWK+G TG  QT++S+S PP  LL IFGIVI LLW S +  G+EAQL  
Sbjct: 1   MEWFYPKRRGPEWKQGWTG--QTVASMSTPPFPLLAIFGIVISLLWLSHYT-GYEAQLRH 60

Query: 61  S---FQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGAS--PWTIAILVLLIL 120
           S    Q+FLFLLPI +I FM SYS++ L+ +  R SP   A R  S  PW IA+ V+L+L
Sbjct: 61  SAINLQIFLFLLPILLILFMASYSTNWLLYYRLRDSPPDSAPRSTSSFPWGIAVFVVLLL 120

Query: 121 VLLYYQSSFH 125
           +LL YQSSFH
Sbjct: 121 MLLSYQSSFH 127

[Close]

BLAST of CsGy2G013080 vs. TAIR 10
Match: AT5G42146.1 (unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-09
Identity = 42/132 (31.82%), Postives = 67/132 (50.76%), Query Frame = 0


Query: 1   MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQF-NAGHEAQLN 60
           M  F  +RRG  WKRG     +TL + S PP+ LL +  I+ +LL+ S +    +E +  
Sbjct: 1   MGWFIKERRGGSWKRG--WLEETLLTSSAPPLTLLALLAIISLLLFLSSYPRYKYEVEKT 60

Query: 61  -RSFQLFLFLLPIFVIFFMYSYSSSRLINFGFRRS-----PTGLAQRGASPWTIAILVLL 120
             + +LF+  LPI  +F + S S    + F    S        L   G  PW + ++++L
Sbjct: 61  AANLKLFMLFLPILFVFVLVSLSFVHRLLFKSSYSVRANQAKSLFGEGNFPWGVLLMLIL 120

Query: 121 ILVLLYYQSSFH 126
           +L+L+  QS FH
Sbjct: 121 LLLLVSKQSYFH 130

[Close]

BLAST of CsGy2G013080 vs. TAIR 10
Match: AT2G21180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 4.5e-06
Identity = 39/114 (34.21%), Postives = 58/114 (50.88%), Query Frame = 0


Query: 26  SVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNRSFQL--FLFLLPIFVIF-------- 85
           S+SP P  +L+I  +  V L  S + +  EA  +   Q+   L L+P+F+I         
Sbjct: 15  SLSPLPYPVLLILAVASVFLLSSWYFSLEEAAESAEEQINFALLLIPLFLIVLVRWLSSM 74

Query: 86  -----FMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILVLLYYQSSF 125
                 +  +SSSR   +    SP      G+SPW +A L++L+LVLL YQSSF
Sbjct: 75  ENPDALLGMFSSSRRTTY---VSPGAGGDGGSSPWGVAALIVLLLVLLQYQSSF 125

The following BLAST results are available for this feature:

BLAST of CsGy2G013080 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G013080 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61894.1	1.19e-84	100.00	hypothetical protein Csa_005908 [Cucumis sativus]	[more]
KAG7010871.1	4.86e-41	65.12	hypothetical protein SDJN02_27669, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAF3434655.1	1.77e-40	62.02	hypothetical protein FNV43_RR21740 [Rhamnella rubrinervis]	[more]
PON55102.1	1.06e-37	57.69	Transmembrane protein [Parasponia andersonii]	[more]
PON83413.1	2.12e-37	56.92	Transmembrane protein [Trema orientale]	[more]

BLAST of CsGy2G013080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLH8	5.77e-85	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263890 PE=4 SV=1	[more]
A0A2P5C233	5.11e-38	57.69	Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_190300 PE=4...	[more]
A0A2P5ED06	1.03e-37	56.92	Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_208280 PE=4 SV=1	[more]
W9QKI2	2.20e-37	56.06	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024950 PE=4 SV=1	[more]
B9H148	2.94e-37	57.69	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G167800 PE=4 ...	[more]

BLAST of CsGy2G013080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42146.1	2.6e-09	31.82	unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bac...	[more]
AT2G21180.1	4.5e-06	34.21	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306:SF21	EXPRESSED PROTEIN	coord: 1..125
None	No IPR available	PANTHER	PTHR33306	EXPRESSED PROTEIN-RELATED-RELATED	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G013080.2	CsGy2G013080.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane