CsGy2G011890 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G011890
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	mitochondrial import receptor subunit TOM6 homolog
Location	Gy14Chr2: 11873523 .. 11875726 (+)
RNA-Seq Expression	CsGy2G011890
Synteny	CsGy2G011890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCAATTGTAGGGTTGGGCTTTAAAGGCTTAAACCCACGCCATAAGAAATAGAAAAACCCCAAATCCGATTCTAGGGTTTTATCGTCCTCTTTCGGTCATTCCGATCCAGACAATTCCAAACCAAAAAAATGTTTCCAGGGATGTTTATGCGTAAGCCTGATAAGGCTGCTGCTCTCAAGCAGCTCCGATCTCACGTCGCTATGTTCGGCGTTTGGGTTGCTGTAATTCGAGTTACTCCCTATGTTCTTCACTACCTCTCCGACGAGAAAGAAGAACTCAAGCTCGACTTTTAGGTCATTCCCTAAGGTATTTCAATTCCATCCTCTCATTATCCTTCTGGGGTTTTGAATTTTTAGTGTTTTTGAGAAATTATATGATCTCATCCCTTGGGATTCTGTTTTGATTATTACTTGAAATTTAGGGTTGGATTCACTCTCTGCTTCTATCTTGAATTTTCAGTTGTTTATACTGCCGAGATTCGGTTGATTTTGTTAAATTAGCCTGCTTGGAAGCTTCTGTGGGACGGAATTCATTTGTTCTCAGTTAACTGCAGTGTTTTATTCTTTCCTTGGCTATGTATATTGACGACTGGGGTAGGCTTTTGTATTAAGGACTTGGGAGAGACCTTAATAAGTGATATGTCAACTACCAAGCATTGGTCATGCTTGGTAGTTGGTTCTGCTAATTGCCATATTGGTCGGAATATGACAACAAACTGGATTTGTCTCTGGCACATGTTTGAGAGTGATTTTAAAATGCTTTAAATTGAGGGATTGAAGATGTGCTTTTGAAGTTGTTTTGAGTAGGACGAAAGTAATTTTAATAATTGCAAAGCAACTCCCAAACATGCACATGCACTTGCACTCATCCGAAATGCTTTTCAAAGGGTCATCTCCTGTAACCTTGAGCCGTTAGTCGATACTCTATTACCCTATATCAACATACAATTTTCTAGATATTCTGATGAAAGTAGAGACTGAGGAAGATTCCACGCTTGATTATTGTTCGGTGCACTAGAAGTTGTCCGATAAAATGCTTATATCATAAACGTGACAAATTTTATACGGGTATGCAAGGGAATCTGAGATTGCACGGCCTTCCTTCTTAGGACTTAGAAGGGTCTCCTGACTACGATGGGGTGAGAGCTGGGGAATTTAACATCTTTTTAGCTTGTAGGTTTGCTGCTTGAAAATGAAATGAAAATATACAGAATTGATGTCGTCTTCTGATTAATAGGAAATATAACCATCTCTTTACTTCCTTTTTATGGAAACCTCTTTACTTCCTTCCAGTGTGATTTATATCAGGTTTACATGGTTAAGTTACAAATTTGGTCTCTATGATTAGGAGAAAGTTAAATTTAGTCCCTATGGGTTTGAAAGTTAAAATTTCATTTCTTCCTTATGGTTTGATGAAACCTTACACATAATCCTTATGTGTTGATAAAATATAAGGGATGAATGGTAAGTTTTAAACCATAGGGACTAAATTCTGACTTTCTCTAAACTATTTGTATTGCTGGTATATATCTCACTATTTGCTGACTATGACTCGAGGTAGTTTTGTTAATTTGCATGATGTTTATGTAGCTCACTGTTTCCACTTTCCAGGATGTCTGGTTATTGACGACCTCATTTGTGCTGCACGACCATGTGTATTTACATTTGCAGAAATTGATAACTGTTAGCTCCTTCATTTCTTATGCAGTTTTTGACTCGATCATGCGGTGAGGTGAGGTGAGGTGAAGTGAAGACTTTCCAAATTAAGCTCATGGGAAAAGAAGGGAAGGAGACTTGTAATCTTTTTCATTATTTTCCATTTTTACCTTTTCTATTGGATAATAAGCAAATGGTTATTATAGTGTTTGATGAGACGTGAAACCATTCCATTAATTCTCTGGTTGGGTGTGGGGGCAGGCAATGAAGGTTGCATTTTAGTTGGTAGAATGTGTTAATGTGAGATGCAGATGACACTGTCCTTTTATGCAGCTACAGTTATTTGGCCTTAATTATTATTGTAACTTTATTTATTTTATATATTAAAATCCCATTGATAATTATAATTAACTTCCCCCAACTATATGTGGTGAGAACATAGAAATACTTCAATTAGCTCCATAAGGCCACGTCTAACTAAATGTGATGTTGGATTTAAAGGGTACATTCTGGACCTTGAGATTTACAGTAGGTTTCTAAAAGGGGG

mRNA sequence

ATTCAATTGTAGGGTTGGGCTTTAAAGGCTTAAACCCACGCCATAAGAAATAGAAAAACCCCAAATCCGATTCTAGGGTTTTATCGTCCTCTTTCGGTCATTCCGATCCAGACAATTCCAAACCAAAAAAATGTTTCCAGGGATGTTTATGCGTAAGCCTGATAAGGCTGCTGCTCTCAAGCAGCTCCGATCTCACGTCGCTATGTTCGGCGTTTGGGTTGCTGTAATTCGAGTTACTCCCTATGTTCTTCACTACCTCTCCGACGAGAAAGAAGAACTCAAGCTCGACTTTTAGGTCATTCCCTAAGTTTTTGACTCGATCATGCGGTGAGGTGAGGTGAGGTGAAGTGAAGACTTTCCAAATTAAGCTCATGGGAAAAGAAGGGAAGGAGACTTGTAATCTTTTTCATTATTTTCCATTTTTACCTTTTCTATTGGATAATAAGCAAATGGTTATTATAGTGTTTGATGAGACGTGAAACCATTCCATTAATTCTCTGGTTGGGTGTGGGGGCAGGCAATGAAGGTTGCATTTTAGTTGGTAGAATGTGTTAATGTGAGATGCAGATGACACTGTCCTTTTATGCAGCTACAGTTATTTGGCCTTAATTATTATTGTAACTTTATTTATTTTATATATTAAAATCCCATTGATAATTATAATTAACTTCCCCCAACTATATGTGGTGAGAACATAGAAATACTTCAATTAGCTCCATAAGGCCACGTCTAACTAAATGTGATGTTGGATTTAAAGGGTACATTCTGGACCTTGAGATTTACAGTAGGTTTCTAAAAGGGGG

Coding sequence (CDS)

ATGTTTCCAGGGATGTTTATGCGTAAGCCTGATAAGGCTGCTGCTCTCAAGCAGCTCCGATCTCACGTCGCTATGTTCGGCGTTTGGGTTGCTGTAATTCGAGTTACTCCCTATGTTCTTCACTACCTCTCCGACGAGAAAGAAGAACTCAAGCTCGACTTTTAG

Protein sequence

MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF*

Homology

[Close]

BLAST of CsGy2G011890 vs. ExPASy Swiss-Prot
Match: Q9XIA7 (Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana OX=3702 GN=TOM6 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.7e-18
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 55
          MFPGMFMRKPDKA ALKQLR+HVA+FG WV +IR  PYVL Y SD K+ELK+DF
Sbjct: 1  MFPGMFMRKPDKAEALKQLRTHVALFGSWVVIIRAAPYVLSYFSDSKDELKIDF 54

[Close]

BLAST of CsGy2G011890 vs. NCBI nr
Match: XP_004154290.1 (mitochondrial import receptor subunit TOM6 homolog [Cucumis sativus] >XP_008459248.1 PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Cucumis melo] >XP_011649217.1 mitochondrial import receptor subunit TOM6 homolog [Cucumis sativus] >XP_022943932.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita moschata] >XP_022943933.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita moschata] >XP_022948071.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita moschata] >XP_022986654.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_022986655.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_022986656.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_023007537.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita maxima] >XP_023511843.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita pepo subsp. pepo] >XP_023511844.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita pepo subsp. pepo] >XP_023532551.1 mitochondrial import receptor subunit TOM6 homolog [Cucurbita pepo subsp. pepo] >XP_038900853.1 mitochondrial import receptor subunit TOM6 homolog [Benincasa hispida] >KAA0045963.1 Mitochondrial import receptor subunit TOM6 -like protein [Cucumis melo var. makuwa] >KGN61761.1 hypothetical protein Csa_006573 [Cucumis sativus] >TYK13622.1 Mitochondrial import receptor subunit TOM6 -like protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (286), Expect = 4.42e-32
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]

BLAST of CsGy2G011890 vs. NCBI nr
Match: XP_022148517.1 (mitochondrial import receptor subunit TOM6 homolog [Momordica charantia])

HSP 1 Score: 113 bits (282), Expect = 1.80e-31
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKL+F
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLEF 54

[Close]

BLAST of CsGy2G011890 vs. NCBI nr
Match: MBA0872591.1 (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 109 bits (272), Expect = 6.07e-30
Identity = 48/54 (88.89%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54
          MFPGMFMRKPDKAAALKQL++HVAMFGVWVAV+RVTPY+LHYLSDEKEELK++F
Sbjct: 1  MFPGMFMRKPDKAAALKQLKTHVAMFGVWVAVVRVTPYILHYLSDEKEELKIEF 54

[Close]

BLAST of CsGy2G011890 vs. NCBI nr
Match: XP_038992352.1 (mitochondrial import receptor subunit TOM6 homolog [Hibiscus syriacus])

HSP 1 Score: 109 bits (272), Expect = 6.07e-30
Identity = 49/54 (90.74%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54
          MFPGMFMRKPDKAAALKQL++HVAMFGVWVAV+RVTPYVLHYLSDEK+ELKL+F
Sbjct: 1  MFPGMFMRKPDKAAALKQLKAHVAMFGVWVAVVRVTPYVLHYLSDEKDELKLEF 54

[Close]

BLAST of CsGy2G011890 vs. NCBI nr
Match: XP_012458101.1 (PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Gossypium raimondii] >XP_016731270.1 mitochondrial import receptor subunit TOM6 homolog [Gossypium hirsutum] >XP_017613195.1 PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Gossypium arboreum] >KAB2036108.1 hypothetical protein ES319_D04G200500v1 [Gossypium barbadense] >MBA0572665.1 hypothetical protein [Gossypium lobatum] >MBA0782181.1 hypothetical protein [Gossypium trilobum] >TYG74796.1 hypothetical protein ES288_D04G211400v1 [Gossypium darwinii] >TYH78247.1 hypothetical protein ES332_D04G212500v1 [Gossypium tomentosum] >TYJ40795.1 hypothetical protein E1A91_A04G165400v1 [Gossypium mustelinum])

HSP 1 Score: 109 bits (272), Expect = 6.07e-30
Identity = 48/54 (88.89%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54
          MFPGMFMRKPDKAAALKQL++HVAMFGVWVAV+RVTPY+LHYLSDEKEELK++F
Sbjct: 1  MFPGMFMRKPDKAAALKQLKAHVAMFGVWVAVVRVTPYILHYLSDEKEELKIEF 54

[Close]

BLAST of CsGy2G011890 vs. ExPASy TrEMBL
Match: A0A6J1JEM5 (mitochondrial import receptor subunit TOM6 homolog OS=Cucurbita maxima OX=3661 GN=LOC111484330 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 2.14e-32
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]

BLAST of CsGy2G011890 vs. ExPASy TrEMBL
Match: A0A6J1FXI3 (mitochondrial import receptor subunit TOM6 homolog OS=Cucurbita moschata OX=3662 GN=LOC111448504 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 2.14e-32
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]

BLAST of CsGy2G011890 vs. ExPASy TrEMBL
Match: A0A5A7TQX5 (Mitochondrial import receptor subunit TOM6-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G001260 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 2.14e-32
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]

BLAST of CsGy2G011890 vs. ExPASy TrEMBL
Match: A0A0A0LP29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238770 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 2.14e-32
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]

BLAST of CsGy2G011890 vs. ExPASy TrEMBL
Match: A0A1S3C9U8 (mitochondrial import receptor subunit TOM6 homolog OS=Cucumis melo OX=3656 GN=LOC103498428 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 2.14e-32
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54
          MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF
Sbjct: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 54

[Close]

BLAST of CsGy2G011890 vs. TAIR 10
Match: AT1G49410.1 (translocase of the outer mitochondrial membrane 6 )

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-19
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1  MFPGMFMRKPDKAAALKQLRSHVAMFGVWVAVIRVTPYVLHYLSDEKEELKLDF 55
          MFPGMFMRKPDKA ALKQLR+HVA+FG WV +IR  PYVL Y SD K+ELK+DF
Sbjct: 1  MFPGMFMRKPDKAEALKQLRTHVALFGSWVVIIRAAPYVLSYFSDSKDELKIDF 54

The following BLAST results are available for this feature:

BLAST of CsGy2G011890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XIA7	1.7e-18	75.93	Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana OX=37...	[more]

BLAST of CsGy2G011890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004154290.1	4.42e-32	100.00	mitochondrial import receptor subunit TOM6 homolog [Cucumis sativus] >XP_0084592...	[more]
XP_022148517.1	1.80e-31	98.15	mitochondrial import receptor subunit TOM6 homolog [Momordica charantia]	[more]
MBA0872591.1	6.07e-30	88.89	hypothetical protein [Gossypium schwendimanii]	[more]
XP_038992352.1	6.07e-30	90.74	mitochondrial import receptor subunit TOM6 homolog [Hibiscus syriacus]	[more]
XP_012458101.1	6.07e-30	88.89	PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Gossypium raimond...	[more]

BLAST of CsGy2G011890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JEM5	2.14e-32	100.00	mitochondrial import receptor subunit TOM6 homolog OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1FXI3	2.14e-32	100.00	mitochondrial import receptor subunit TOM6 homolog OS=Cucurbita moschata OX=3662...	[more]
A0A5A7TQX5	2.14e-32	100.00	Mitochondrial import receptor subunit TOM6-like protein OS=Cucumis melo var. mak...	[more]
A0A0A0LP29	2.14e-32	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238770 PE=4 SV=1	[more]
A0A1S3C9U8	2.14e-32	100.00	mitochondrial import receptor subunit TOM6 homolog OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of CsGy2G011890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49410.1	1.2e-19	75.93	translocase of the outer mitochondrial membrane 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034554	Mitochondrial import receptor subunit TOM6 homologue, plants	PANTHER	PTHR35999	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM6 HOMOLOG	coord: 1..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G011890.2	CsGy2G011890.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005742	mitochondrial outer membrane translocase complex