CsGy2G009760 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G009760
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Gy14Chr2: 9290745 .. 9292036 (-)
RNA-Seq Expression	CsGy2G009760
Synteny	CsGy2G009760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCAATCAAGGTTGACAACCTTGATCCTTTTTTAGATGCAACCTCTCTATTCACCGAATTTATCAACGATGAAATCTGCCTCAAGTTCTCACCATCGACGTTTTCAATGATTGCTCGATATCAATGCCCGACCTTCTTTGCAATGTTGTTCATGCCACATCCATTATTCGTTGAATACTCCGTTGATCGAAATCATATTTCAAGGATTTCTCTCCGATGCTTCCGGAATGCTTTGTTGGAAGGTCAAAGCTATTCCTCAATGAGTATCCATCTTCGAGAACCCCAAAATACCATACTCTTTAAATTTGAGCCTTCAAGTTAGTATATACAGTAAATATAATGTTTGCTCTCTTTTTTCTCTTAAAAAGTGAATCAATAGAACTTTTTGTGTTTTGATTCTTCTTTCTATTTTTCTACTCTTTTGTGATTTCTTAATTCAAATTTGTTTGCGAAGACGGCTCCTTAGTTAGCCGATATGATTTATCTACTCTCTGGATCAACTTGAAGGCTTTTCTTTAACATCTTTTCTCTTGTATTTTTTTACTTTGAGCTTATGTCCAATTTTTCGTGTAAGTCTTCTTTATTGTTAATTGTTAATGTATCTATTTGACATAATTAATGGAGGTACAATAGGATGTGTCAGTCGAGTTGAGATATTCTAGTATATACTCTAATCCCATTTCTTCTTAACAAAATGCTTGATCATTGAGAATAGTGCAACGCTAATTTGTGTTGATTTTTTTTTCTTCATATCAATTGTTCTAGAGTTGAACTTTTTATACTTTCAAATAACATTTTAGTCCTTATATTTTTAATTAACACGTTTCAATTAGTTCTCGTGCTTTCAATAAAATCTCAAAGTTAGTTCATGTTTAGTTCGTATGTATGCATGTCAATTCATGATTCAAATTATAACTTTTATTTTAAGGGCCTTCTGCACTACCATTGCATCATGAATTGACATTCTTGCCCATGGAAGATTGGTCTCCTAACCAAGTTAGCCTAAATGGAAAACTTTTCTCCATTGAGTCTGAAATGTTTAGCAATATTTTAACAACATTTTCTGTCTACAATGAAGTTGATACAAGTAATGTACCTCTTCTCTTTTCCTTTATCCATTTTTATTTTACTTGAAACCAAAGTTATATATCTTGGTACATAGCTAAAACCCTTCCATCATTTGTCACAGTTTTGATTACTTCAAGAGGTTCACAAATCACATTCTCTGCGGTTCCACGTGAGGAGATAATTATTAGGGAAGAGGTATGTTTTGTGAAATTTGTGTAA

mRNA sequence

ATGTTCTCAATCAAGGTTGACAACCTTGATCCTTTTTTAGATGCAACCTCTCTATTCACCGAATTTATCAACGATGAAATCTGCCTCAAGTTCTCACCATCGACGTTTTCAATGATTGCTCGATATCAATGCCCGACCTTCTTTGCAATGTTGTTCATGCCACATCCATTATTCGTTGAATACTCCGTTGATCGAAATCATATTTCAAGGATTTCTCTCCGATGCTTCCGGAATGCTTTGTTGGAAGGTCAAAGCTATTCCTCAATGAGTATCCATCTTCGAGAACCCCAAAATACCATACTCTTTAAATTTGAGCCTTCAATTTTGATTACTTCAAGAGGTTCACAAATCACATTCTCTGCGGTTCCACGTGAGGAGATAATTATTAGGGAAGAGGTATGTTTTGTGAAATTTGTGTAA

Coding sequence (CDS)

ATGTTCTCAATCAAGGTTGACAACCTTGATCCTTTTTTAGATGCAACCTCTCTATTCACCGAATTTATCAACGATGAAATCTGCCTCAAGTTCTCACCATCGACGTTTTCAATGATTGCTCGATATCAATGCCCGACCTTCTTTGCAATGTTGTTCATGCCACATCCATTATTCGTTGAATACTCCGTTGATCGAAATCATATTTCAAGGATTTCTCTCCGATGCTTCCGGAATGCTTTGTTGGAAGGTCAAAGCTATTCCTCAATGAGTATCCATCTTCGAGAACCCCAAAATACCATACTCTTTAAATTTGAGCCTTCAATTTTGATTACTTCAAGAGGTTCACAAATCACATTCTCTGCGGTTCCACGTGAGGAGATAATTATTAGGGAAGAGGTATGTTTTGTGAAATTTGTGTAA

Protein sequence

MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVEYSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFSAVPREEIIIREEVCFVKFV*

Homology

[Close]

BLAST of CsGy2G009760 vs. NCBI nr
Match: KGN61523.1 (hypothetical protein Csa_006491 [Cucumis sativus])

HSP 1 Score: 278 bits (711), Expect = 2.91e-94
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120
           YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120

Query: 121 AVPREEIIIREEVCFVKFV 139
           AVPREEIIIREEVCFVKFV
Sbjct: 121 AVPREEIIIREEVCFVKFV 139

[Close]

BLAST of CsGy2G009760 vs. NCBI nr
Match: XP_031736681.1 (uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharacterized protein LOC116403863 [Cucumis sativus])

HSP 1 Score: 150 bits (380), Expect = 2.30e-42
Identity = 77/127 (60.63%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIK+D++DPFLDAT LF E  +DEICLKF PST S+I RY+CP FF  + +P PLFVE
Sbjct: 1   MFSIKIDDIDPFLDATILFAELTHDEICLKFLPSTMSIIVRYECPIFFVTMSLPQPLFVE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILIT-SRGSQITF 120
           YSVDRNHISRISL  F +ALLE Q++++++IHL+E QN IL  FEPS   T     ++TF
Sbjct: 61  YSVDRNHISRISLLSFYSALLECQTFAALNIHLQEDQNKILLTFEPSSPSTLPLNRELTF 120

Query: 121 SAVPREE 126
             VP E+
Sbjct: 121 -VVPMED 126

[Close]

BLAST of CsGy2G009760 vs. NCBI nr
Match: KGN45637.1 (hypothetical protein Csa_005027 [Cucumis sativus])

HSP 1 Score: 144 bits (363), Expect = 6.12e-41
Identity = 71/107 (66.36%), Postives = 82/107 (76.64%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIK+D LDP LDA SLFT+ +ND+ICLKFS STFS+IARYQ P FFAMLF+P PLF E
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 107
           Y V R+HI R+SL     AL  GQ+YSS+ IHL+E QN I   FEPS
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPS 107

[Close]

BLAST of CsGy2G009760 vs. NCBI nr
Match: KAE8646596.1 (hypothetical protein Csa_004903, partial [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 6.07e-22
Identity = 44/105 (41.90%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+ N DP LDATS F +   D+  +KF+PS F +I+ ++ P F A L +    F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE 105
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N I+ +F+
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFD 105

[Close]

BLAST of CsGy2G009760 vs. NCBI nr
Match: XP_031743987.1 (uncharacterized protein LOC116404759 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 8.67e-21
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+ N DP LDATS F +   D+  +KF+PS F +I+ ++ P F A L +    F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE-PSILITSRGSQITF 120
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N I+ +F+ PS  I     ++  
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 SAVPREE 126
           S    E+
Sbjct: 121 SPPQAED 127

[Close]

BLAST of CsGy2G009760 vs. ExPASy TrEMBL
Match: A0A0A0LIE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1)

HSP 1 Score: 278 bits (711), Expect = 1.41e-94
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE
Sbjct: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120
           YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS
Sbjct: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPSILITSRGSQITFS 120

Query: 121 AVPREEIIIREEVCFVKFV 139
           AVPREEIIIREEVCFVKFV
Sbjct: 121 AVPREEIIIREEVCFVKFV 139

[Close]

BLAST of CsGy2G009760 vs. ExPASy TrEMBL
Match: A0A0A0KB76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1)

HSP 1 Score: 144 bits (363), Expect = 2.96e-41
Identity = 71/107 (66.36%), Postives = 82/107 (76.64%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MFSIK+D LDP LDA SLFT+ +ND+ICLKFS STFS+IARYQ P FFAMLF+P PLF E
Sbjct: 1   MFSIKIDKLDPLLDAISLFTDIVNDKICLKFSLSTFSIIARYQHPFFFAMLFIPEPLFAE 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFEPS 107
           Y V R+HI R+SL     AL  GQ+YSS+ IHL+E QN I   FEPS
Sbjct: 61  YFVGRDHILRVSLLSLHTALARGQTYSSLRIHLQEEQNIICLAFEPS 107

[Close]

BLAST of CsGy2G009760 vs. ExPASy TrEMBL
Match: A0A0A0K902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.33e-22
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+ N DP LDATS F +   D+  +KF+PS F +I+ ++ P F A L +    F  
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE-PSILITSRGSQITF 120
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N I+ +F+ PS  I     ++  
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 SAVPREE 126
           S    E+
Sbjct: 121 SPPQAED 127

[Close]

BLAST of CsGy2G009760 vs. ExPASy TrEMBL
Match: A0A1S3CL88 (uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.65e-21
Identity = 50/127 (39.37%), Postives = 76/127 (59.84%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+ N DP LDATS   +   D   LKF+PS F +IA ++ P F A L +    F  
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE-PSILITSRGSQITF 120
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N ++ +F+ PS  I     ++T 
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 SAVPREE 126
           S    E+
Sbjct: 121 SPPQAED 127

[Close]

BLAST of CsGy2G009760 vs. ExPASy TrEMBL
Match: A0A5D3DZ07 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00070 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.39e-19
Identity = 50/127 (39.37%), Postives = 76/127 (59.84%), Query Frame = 0


Query: 1   MFSIKVDNLDPFLDATSLFTEFINDEICLKFSPSTFSMIARYQCPTFFAMLFMPHPLFVE 60
           MF +K+ N DP LDATS   +   D   LKF+PS F +IA ++ P F A L +    F  
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YSVDRNHISRISLRCFRNALLEGQSYSSMSIHLREPQNTILFKFE-PSILITSRGSQITF 120
           +SVD +H S++SL  F +A+L+G S++SM+IHL +  N ++ +F+ PS  I     ++T 
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 SAVPREE 126
           S    E+
Sbjct: 121 SPPQAED 127

The following BLAST results are available for this feature:

BLAST of CsGy2G009760 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G009760 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61523.1	2.91e-94	100.00	hypothetical protein Csa_006491 [Cucumis sativus]	[more]
XP_031736681.1	2.30e-42	60.63	uncharacterized protein LOC116402062 [Cucumis sativus] >XP_031741497.1 uncharact...	[more]
KGN45637.1	6.12e-41	66.36	hypothetical protein Csa_005027 [Cucumis sativus]	[more]
KAE8646596.1	6.07e-22	41.90	hypothetical protein Csa_004903, partial [Cucumis sativus]	[more]
XP_031743987.1	8.67e-21	38.58	uncharacterized protein LOC116404759 [Cucumis sativus]	[more]

BLAST of CsGy2G009760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIE0	1.41e-94	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G155090 PE=4 SV=1	[more]
A0A0A0KB76	2.96e-41	66.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002310 PE=4 SV=1	[more]
A0A0A0K902	9.33e-22	38.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1	[more]
A0A1S3CL88	9.65e-21	39.37	uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=...	[more]
A0A5D3DZ07	1.39e-19	39.37	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of CsGy2G009760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 1..139 e-value: 1.6E-10 score: 42.7
None	No IPR available	SUPERFAMILY	55979	DNA clamp	coord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G009760.2	CsGy2G009760.2	mRNA