CsGy2G008580 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G008580
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	CLAVATA3/ESR (CLE)-related protein 45
Location	Gy14Chr2: 7689667 .. 7691164 (-)
RNA-Seq Expression	CsGy2G008580
Synteny	CsGy2G008580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAAAGAGGGAGAAAAAAAAACCAACATATCTATCCTCTTTCTCCCTCTTTTTGCTTCATTGTAGAAGCCATGGGTTTTAGTATACACAGAGTACTTATTGTCCTTCTCATGTGTGTTGTTGCACTTTTAGCTGTTAAAACAGATCAGGCCTGTGCTTTGAGAAGTATAGACCTTGCTCTAAGACCAAGCCGCCACATTCTTGTTGAAGACTCAACAGTGGAGGAACTGAACATGAAAAGGAATTCACAACCACGAAACAACAAGTTCGATCCAAATCGATCAAGCAAAAGAAGGGTTCGGCGAGGATCGGATCCTATCCACAACAGGTCTTAGTTCATTTCTGTTGTTTGCTGAAGGAACCCACAAATTTGATATCAACAGAAGCAAGGAAACAGAGAAAGGTTCAGGCCACAGCAGAGGAAGAAACACCAGCAAGAATCTGGTTTCTCCAATGGTTGGTTGGTTGGTTTGATCATTTATCCCCATTACATAACGATTCCGTTTTTAGTTTTCTGTTTTTGAAAATTATGCTAGAATTTTCACAATTTCTTTAGTATATTTTGCACATTCCTTAAAAACACATTTGAATTCTAAGCCAAATTTAAAAACAAACCCATATATATAAAAAAAAGTTTTGAAATTTGGCTTAGACTTTAAATATGTTTTTGAAGAGCGGTTAACAAAACAAAGAACTACCTCAGAGAAAGTGGTATTTATAAGCTTACTTTAAAAAACAGAAAGTTAAAAACAAAATTGTTATCAAATGGGTTTAATGTTTTGTTTTCAGAGTTCTTGTTCCTCATATGTGTATAGTAAAGCTTCCTGGAGGAAGTCCAACACAATGACCTCCACACTGAAACTAGAAGTGAATTCATAAACTTAGCAGTAAAAAGATCACAGAGATGAATGACAAAAAGAATCCAACTACTTGACAAAGTAACATTGAATTTCTTTTGAAAAGATGATTACTTTGAATCTGTTTGGAACTTCAAGTTCAAGTTTCATGTTGCAACAAGATTCTTTTTTAATCCATCAGCTAGATTTTAACAAAGCTTTTAATTAATTTAGTTCATCTTCTACGGATACCATTTTGGGAAATTTTATAGAAGATGTCTCCTCTCTTCCCCAGAAATTGCACAGTTTCACGCAAATCTGCACACAATCAATTACCCATCAGCTCACTGAGGAGCCTTGTGAATGTGTACAACTCAACTTGTGGCCTTGCCTTTTGCTCTTTAGCTTTTTCTTTATATATTGTGGGTTTCAAAGCTTTGAGATGAACATAAGGAAGTGTAATGAGTAAAGCATTTTGATGTTATGAGAAACTGTGAACAAGAGTCTAAAAGTGTAATGATTAAAGCATTTTGATGTTCTGAGGAATTGTGAAGAAGAGTGTATTCATTGTTGTTTGTGTCAAACAAGAAGAAAAATCTTGCACATCATAATCATGGTTGACAAAGTACTGATAATTCTGAGTGTCTGAC

mRNA sequence

AAAAAAAAAAAAAAAAAAGAGGGAGAAAAAAAAACCAACATATCTATCCTCTTTCTCCCTCTTTTTGCTTCATTGTAGAAGCCATGGGTTTTAGTATACACAGAGTACTTATTGTCCTTCTCATGTGTGTTGTTGCACTTTTAGCTGTTAAAACAGATCAGGCCTGTGCTTTGAGAAGTATAGACCTTGCTCTAAGACCAAGCCGCCACATTCTTGTTGAAGACTCAACAGTGGAGGAACTGAACATGAAAAGGAATTCACAACCACGAAACAACAAGTTCGATCCAAATCGATCAAGCAAAAGAAGGGTTCGGCGAGGATCGGATCCTATCCACAACAGGTCTTAGTTCATTTCTGTTGTTTGCTGAAGGAACCCACAAATTTGATATCAACAGAAGCAAGGAAACAGAGAAAGGTTCAGGCCACAGCAGAGGAAGAAACACCAGCAAGAATCTGGTTTCTCCAATGGTTGGTTGGTTGGTTTGATCATTTATCCCCATTACATAACGATTCCGTTTTTAGTTTTCTGTTTTTGAAAATTATGCTAGAATTTTCACAATTTCTTTAGTATATTTTGCACATTCCTTAAAAACACATTTGAATTCTAAGCCAAATTTAAAAACAAACCCATATATATAAAAAAAAGTTTTGAAATTTGGCTTAGACTTTAAATATGTTTTTGAAGAGCGGTTAACAAAACAAAGAACTACCTCAGAGAAAGTGGTATTTATAAGCTTACTTTAAAAAACAGAAAGTTAAAAACAAAATTGTTATCAAATGGGTTTAATGTTTTGTTTTCAGAGTTCTTGTTCCTCATATGTGTATAGTAAAGCTTCCTGGAGGAAGTCCAACACAATGACCTCCACACTGAAACTAGAAGTGAATTCATAAACTTAGCAGTAAAAAGATCACAGAGATGAATGACAAAAAGAATCCAACTACTTGACAAAGTAACATTGAATTTCTTTTGAAAAGATGATTACTTTGAATCTGTTTGGAACTTCAAGTTCAAGTTTCATGTTGCAACAAGATTCTTTTTTAATCCATCAGCTAGATTTTAACAAAGCTTTTAATTAATTTAGTTCATCTTCTACGGATACCATTTTGGGAAATTTTATAGAAGATGTCTCCTCTCTTCCCCAGAAATTGCACAGTTTCACGCAAATCTGCACACAATCAATTACCCATCAGCTCACTGAGGAGCCTTGTGAATGTGTACAACTCAACTTGTGGCCTTGCCTTTTGCTCTTTAGCTTTTTCTTTATATATTGTGGGTTTCAAAGCTTTGAGATGAACATAAGGAAGTGTAATGAGTAAAGCATTTTGATGTTATGAGAAACTGTGAACAAGAGTCTAAAAGTGTAATGATTAAAGCATTTTGATGTTCTGAGGAATTGTGAAGAAGAGTGTATTCATTGTTGTTTGTGTCAAACAAGAAGAAAAATCTTGCACATCATAATCATGGTTGACAAAGTACTGATAATTCTGAGTGTCTGAC

Coding sequence (CDS)

ATGGGTTTTAGTATACACAGAGTACTTATTGTCCTTCTCATGTGTGTTGTTGCACTTTTAGCTGTTAAAACAGATCAGGCCTGTGCTTTGAGAAGTATAGACCTTGCTCTAAGACCAAGCCGCCACATTCTTGTTGAAGACTCAACAGTGGAGGAACTGAACATGAAAAGGAATTCACAACCACGAAACAACAAGTTCGATCCAAATCGATCAAGCAAAAGAAGGGTTCGGCGAGGATCGGATCCTATCCACAACAGGTCTTAG

Protein sequence

MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQPRNNKFDPNRSSKRRVRRGSDPIHNRS*

Homology

[Close]

BLAST of CsGy2G008580 vs. NCBI nr
Match: KGN61380.1 (hypothetical protein Csa_006322 [Cucumis sativus])

HSP 1 Score: 162 bits (411), Expect = 3.69e-50
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60
          MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ
Sbjct: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60

Query: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87
          PRNNKFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87

[Close]

BLAST of CsGy2G008580 vs. NCBI nr
Match: KAA0032271.1 (CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYK17075.1 CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (360), Expect = 2.16e-42
Identity = 80/87 (91.95%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60
          M FSIHRVLIVLLMCV ALLAVK +QACALRSIDLALRPSRHILVEDS VEELNMKRNS 
Sbjct: 1  MVFSIHRVLIVLLMCV-ALLAVKPEQACALRSIDLALRPSRHILVEDSRVEELNMKRNSL 60

Query: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87
          P+NNKFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PQNNKFDPNRSSKRRVRRGSDPIHNRS 86

[Close]

BLAST of CsGy2G008580 vs. NCBI nr
Match: KAG7029950.1 (hypothetical protein SDJN02_08294, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139 bits (349), Expect = 1.06e-40
Identity = 75/87 (86.21%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60
          M FSIHRVL+VLLMCVVALLAV+ DQACA+RSIDLALR SRHILVEDS VEE NMKRNS 
Sbjct: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACAVRSIDLALRSSRHILVEDSRVEEKNMKRNSL 60

Query: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87
          PRN+KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87

[Close]

BLAST of CsGy2G008580 vs. NCBI nr
Match: KAG6598982.1 (hypothetical protein SDJN03_08760, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137 bits (345), Expect = 4.33e-40
Identity = 75/87 (86.21%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60
          M FSIHRVL+VLLMCVVALLAV+ DQACALRSIDLA R SRHILVEDS VEE NMKRNS 
Sbjct: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLAPRSSRHILVEDSRVEEKNMKRNSL 60

Query: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87
          PRN+KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87

[Close]

BLAST of CsGy2G008580 vs. NCBI nr
Match: KAG7036811.1 (hypothetical protein SDJN02_00431, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108 bits (271), Expect = 6.59e-29
Identity = 64/87 (73.56%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60
          M FSIHRVL+VLLMCVVALLAVK +QAC L S+DLALRP RH+L +          RNS+
Sbjct: 1  MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRHVLEDPRD-------RNSR 60

Query: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87
          PRN KFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PRN-KFDPNRSSKRRVRRGSDPIHNRS 79

[Close]

BLAST of CsGy2G008580 vs. ExPASy TrEMBL
Match: A0A0A0LHH0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G101100 PE=4 SV=1)

HSP 1 Score: 162 bits (411), Expect = 1.79e-50
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60
          MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ
Sbjct: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60

Query: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87
          PRNNKFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87

[Close]

BLAST of CsGy2G008580 vs. ExPASy TrEMBL
Match: A0A5A7SRV2 (CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00220 PE=4 SV=1)

HSP 1 Score: 143 bits (360), Expect = 1.05e-42
Identity = 80/87 (91.95%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60
          M FSIHRVLIVLLMCV ALLAVK +QACALRSIDLALRPSRHILVEDS VEELNMKRNS 
Sbjct: 1  MVFSIHRVLIVLLMCV-ALLAVKPEQACALRSIDLALRPSRHILVEDSRVEELNMKRNSL 60

Query: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87
          P+NNKFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PQNNKFDPNRSSKRRVRRGSDPIHNRS 86

[Close]

BLAST of CsGy2G008580 vs. ExPASy TrEMBL
Match: A0A067GTG0 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034426mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.21e-15
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHI---------LVEDSTVE 60
          M F   RVLI LL+C+  LL+V+ D+   LRSIDL LR ++H          +++++T+ 
Sbjct: 1  MVFFARRVLI-LLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMV 60

Query: 61 ELNMKRNSQPRNNKFDPNRSSKRRVRRGSDPIHNRS 87
           +N ++ S   +NKFDPN+SSKRRVRRGSDPIHNRS
Sbjct: 61 GMNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

[Close]

BLAST of CsGy2G008580 vs. ExPASy TrEMBL
Match: V4VH78 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033178mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.21e-15
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHI---------LVEDSTVE 60
          M F   RVLI LL+C+  LL+V+ D+   LRSIDL LR ++H          +++++T+ 
Sbjct: 1  MVFFARRVLI-LLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMV 60

Query: 61 ELNMKRNSQPRNNKFDPNRSSKRRVRRGSDPIHNRS 87
           +N ++ S   +NKFDPN+SSKRRVRRGSDPIHNRS
Sbjct: 61 GMNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

[Close]

BLAST of CsGy2G008580 vs. ExPASy TrEMBL
Match: A5APJ5 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010312 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.38e-15
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSR--HILVEDS-------TVE 60
          M FS  RVL V L+C+  +LAV+ D+   LRSIDL LR S+  H+L   +        VE
Sbjct: 1  MVFSAQRVL-VFLICI-GVLAVEPDKVSGLRSIDLVLRQSQEDHMLAPKNQRILKAVVVE 60

Query: 61 ELNMKRNSQPRNNKFDPNRSSKRRVRRGSDPIHNRS 87
          +LN + N+ P N KFD N+SSKRRVRRGSDPIHNRS
Sbjct: 61 DLNREENAAPVNKKFDLNQSSKRRVRRGSDPIHNRS 94

The following BLAST results are available for this feature:

BLAST of CsGy2G008580 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G008580 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61380.1	3.69e-50	100.00	hypothetical protein Csa_006322 [Cucumis sativus]	[more]
KAA0032271.1	2.16e-42	91.95	CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYK17075.1 CLA...	[more]
KAG7029950.1	1.06e-40	86.21	hypothetical protein SDJN02_08294, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6598982.1	4.33e-40	86.21	hypothetical protein SDJN03_08760, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7036811.1	6.59e-29	73.56	hypothetical protein SDJN02_00431, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CsGy2G008580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHH0	1.79e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G101100 PE=4 SV=1	[more]
A0A5A7SRV2	1.05e-42	91.95	CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A067GTG0	1.21e-15	50.00	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034426mg PE=4 SV=1	[more]
V4VH78	1.21e-15	50.00	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033178mg PE=4 ...	[more]
A5APJ5	2.38e-15	54.17	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010312 PE=4 SV=1	[more]

BLAST of CsGy2G008580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..87
None	No IPR available	PANTHER	PTHR36726:SF4	CLAVATA3/ESR (CLE)-RELATED PROTEIN 45	coord: 1..87
IPR038821	CLE-related protein 45-like	PANTHER	PTHR36726	CLAVATA3/ESR (CLE)-RELATED PROTEIN 45	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G008580.2	CsGy2G008580.2	mRNA