CsGy2G007920 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G007920
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	photosystem I reaction center subunit IV, chloroplastic-like
Location	Gy14Chr2: 6672129 .. 6673590 (-)
RNA-Seq Expression	CsGy2G007920
Synteny	CsGy2G007920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAATCTAAAGTTTTACTAGAGAAACACAGAATTACCAAAAGAAAGAAGCAACAAGAGAGAAGGGAAAAGAAAATTAGGAAAGGGAAAGAAGAGGAGAGAGAAATAGAATATGTTTGGAGAAAAGGATGAGCCTATCCTTAAGATATGGATATGTTATCTACATGGCAACATTCAATTGGTTTAAACCCAACATTCAATTTTTCCATAGGCTGAGAAAATTCCACCAACAATTATTACCCATAAAACATCTGATTCTTTCTCCTTCAACATGTGGTTATCATTATTTCATTGGGTTTATCTCTTCATCTTCCAAAACCATTAACATATTCTTCATTCATCAGTTATTTGAGGGCATAGAGAAAAAAGATCATTCAAAACACAAAAGGGCAATGGCAATGGCTGCCTCTAACCTTTCTTGCATTGCTTCTGGAGTTGTCATCCCTTCCTCAACCACCATTTCATCTTCCTCTTCTAGGTTATCTTCTTTGGCCTTCTTCCCCAAGAACTCCAACTCTATTTCTAGATCTTCTCGATTGGTTATCCGTGCCTCCGACGAGGCTGCTCCCCCACCCGCTGCTACTGCACCCACTGCCGCCACCACCGAAGAGCCCAAGCCTAAGCCTGCCCCTATTGGTCCCAAGAGAGGTGCCAAGGTGTGTGTGACAACACTTTTCTTTTTCTTTTTCTTTTTTTTTTTTTATTAGTCAATGGAGATTAGGAATCGAGCCTCTTAACTTAGGTGTGGAATTTGATTGATGCTTCATTATTTTTTAACAGGTGAAGATCTTAAGGAAAGAATCTTACTGGTACAAGGATGTTGGATCTGTTGTAACAGTTGACCAGGTTAGACCCTTTCATTTTTATTCATTCCTTTTGGAATAATGAGATTGAGACTCACAGAATCAAGTGAGGGGAACCATGTCCTGTTTAAGGGTTAATTAGGTTGCTCTGTTTAACTAGGGATTTAGATTGTGCATATTTGATGTTACAACTGATATGTTTCTAACATCAAATGTAGCTATACTAATGGTTAATATATGTATAAATGAATTTCTGCAGGATCCCAACACTCGATACCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTCAAGAAGTTGCTTAAGCTTTTTTAATTTGCTTGTGTACTTTTGAGTTAAAAATGTTTGTATAATACTCCAATTTCAATCTATTTCTCCCTCTCTCCATGAGTGTGTGTTTACTGATTCTAAACACTGTTTCTCTTCCCTTTTACTTACATGGTTCACAGCAATCAGAATTTTGCAATGCTTCTAATTTTAGGAGATTGAAATCATTTTTACTTTCAAAACATTCTCGCTTCTGAAGTAGAAGCAAGGGAAAACAACGGTGGAAGTTTGAATCGTGTAAATATATCTCTTTCTTTTCTCTTTTTTTTTGGGAC

mRNA sequence

TGAATCTAAAGTTTTACTAGAGAAACACAGAATTACCAAAAGAAAGAAGCAACAAGAGAGAAGGGAAAAGAAAATTAGGAAAGGGAAAGAAGAGGAGAGAGAAATAGAATATGTTTGGAGAAAAGGATGAGCCTATCCTTAAGATATGGATATGTTATCTACATGGCAACATTCAATTGGTTTAAACCCAACATTCAATTTTTCCATAGGCTGAGAAAATTCCACCAACAATTATTACCCATAAAACATCTGATTCTTTCTCCTTCAACATGTGGTTATCATTATTTCATTGGGTTTATCTCTTCATCTTCCAAAACCATTAACATATTCTTCATTCATCAGTTATTTGAGGGCATAGAGAAAAAAGATCATTCAAAACACAAAAGGGCAATGGCAATGGCTGCCTCTAACCTTTCTTGCATTGCTTCTGGAGTTGTCATCCCTTCCTCAACCACCATTTCATCTTCCTCTTCTAGGTTATCTTCTTTGGCCTTCTTCCCCAAGAACTCCAACTCTATTTCTAGATCTTCTCGATTGGTTATCCGTGCCTCCGACGAGGCTGCTCCCCCACCCGCTGCTACTGCACCCACTGCCGCCACCACCGAAGAGCCCAAGCCTAAGCCTGCCCCTATTGGTCCCAAGAGAGGTGCCAAGGTGAAGATCTTAAGGAAAGAATCTTACTGGTACAAGGATGTTGGATCTGTTGTAACAGTTGACCAGGATCCCAACACTCGATACCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTCAAGAAGTTGCTTAAGCTTTTTTAATTTGCTTGTGTACTTTTGAGTTAAAAATGTTTGTATAATACTCCAATTTCAATCTATTTCTCCCTCTCTCCATGAGTGTGTGTTTACTGATTCTAAACACTGTTTCTCTTCCCTTTTACTTACATGGTTCACAGCAATCAGAATTTTGCAATGCTTCTAATTTTAGGAGATTGAAATCATTTTTACTTTCAAAACATTCTCGCTTCTGAAGTAGAAGCAAGGGAAAACAACGGTGGAAGTTTGAATCGTGTAAATATATCTCTTTCTTTTCTCTTTTTTTTTGGGAC

Coding sequence (CDS)

ATGAGCCTATCCTTAAGATATGGATATGTTATCTACATGGCAACATTCAATTGGTTTAAACCCAACATTCAATTTTTCCATAGGCTGAGAAAATTCCACCAACAATTATTACCCATAAAACATCTGATTCTTTCTCCTTCAACATGTGGTTATCATTATTTCATTGGGTTTATCTCTTCATCTTCCAAAACCATTAACATATTCTTCATTCATCAGTTATTTGAGGGCATAGAGAAAAAAGATCATTCAAAACACAAAAGGGCAATGGCAATGGCTGCCTCTAACCTTTCTTGCATTGCTTCTGGAGTTGTCATCCCTTCCTCAACCACCATTTCATCTTCCTCTTCTAGGTTATCTTCTTTGGCCTTCTTCCCCAAGAACTCCAACTCTATTTCTAGATCTTCTCGATTGGTTATCCGTGCCTCCGACGAGGCTGCTCCCCCACCCGCTGCTACTGCACCCACTGCCGCCACCACCGAAGAGCCCAAGCCTAAGCCTGCCCCTATTGGTCCCAAGAGAGGTGCCAAGGTGAAGATCTTAAGGAAAGAATCTTACTGGTACAAGGATGTTGGATCTGTTGTAACAGTTGACCAGGATCCCAACACTCGATACCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTCAAGAAGTTGCTTAA

Protein sequence

MSLSLRYGYVIYMATFNWFKPNIQFFHRLRKFHQQLLPIKHLILSPSTCGYHYFIGFISSSSKTINIFFIHQLFEGIEKKDHSKHKRAMAMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRASDEAAPPPAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIQEVA*

Homology

[Close]

BLAST of CsGy2G007920 vs. ExPASy Swiss-Prot
Match: Q41229 (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=PSAEB PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.9e-34
Identity = 80/142 (56.34%), Postives = 105/142 (73.94%), Query Frame = 0


Query: 91  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRS-SRLVIRASDEAAPPP 150
           MA+S+++  ASG ++ +    +S+++  +S+ FF  + N+ + +  RLV+RA++EAAPP 
Sbjct: 1   MASSSMASAASGFMVATPNIATSNTAPRTSMLFFSSSKNNTTTNFPRLVVRAAEEAAPPA 60

Query: 151 AATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVR 210
           A              KP PIGPKRG KV++LRKESYWYK VGSVV VDQDPNTRYPVVVR
Sbjct: 61  ATATAEGEAPPAKAAKPPPIGPKRGTKVRVLRKESYWYKGVGSVVAVDQDPNTRYPVVVR 120

Query: 211 FNKVNYASVSTNNYALDEIQEV 232
           FNKVNYA+VSTNNYALDE++EV
Sbjct: 121 FNKVNYANVSTNNYALDEVEEV 142

[Close]

BLAST of CsGy2G007920 vs. ExPASy Swiss-Prot
Match: Q41228 (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=PSAEA PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.1e-33
Identity = 81/141 (57.45%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 91  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRASDEAAPPPA 150
           MA+ N++  AS  ++ +    S++++  +++ FF  + N  S + RLV+RA++EAAPP A
Sbjct: 1   MASCNMASAASNFLVATPNVASNTNTSRTTMLFF-SSKNYGSTAPRLVVRAAEEAAPPAA 60

Query: 151 ATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRF 210
           A     A       KP PIGPKRG KV+ILRKESYWYK  GSVV  DQDPNTRYPVVVRF
Sbjct: 61  AATAEPAEAPVKAAKPPPIGPKRGTKVRILRKESYWYKGTGSVVACDQDPNTRYPVVVRF 120

Query: 211 NKVNYASVSTNNYALDEIQEV 232
           NKVNYA+VSTNNYALDEI+EV
Sbjct: 121 NKVNYANVSTNNYALDEIEEV 140

[Close]

BLAST of CsGy2G007920 vs. ExPASy Swiss-Prot
Match: P12354 (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.1e-33
Identity = 83/123 (67.48%), Postives = 94/123 (76.42%), Query Frame = 0


Query: 112 SSSSSRLSSLAFFPKNSNSISRSSRLVIRASDEAAPPPAATAPTAATTEEPK--PKPAPI 171
           SS + RL      P  + S  RS+RLV+RA++EAA  PAA +P     E PK   KP PI
Sbjct: 6   SSVAVRLGLTQVLPNKNFSSPRSTRLVVRAAEEAAAAPAAASPEG---EAPKAAAKPPPI 65

Query: 172 GPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIQ 231
           GPKRG+KV+I+RKESYWYK VGSVV VDQDP TRYPVVVRFNKVNYA+VSTNNYALDEIQ
Sbjct: 66  GPKRGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQ 125

Query: 232 EVA 233
           EVA
Sbjct: 126 EVA 125

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BLAST of CsGy2G007920 vs. ExPASy Swiss-Prot
Match: Q9S831 (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.7e-32
Identity = 82/138 (59.42%), Postives = 104/138 (75.36%), Query Frame = 0


Query: 104 VIPSS-TTISSSSSRLSSLAFFPKNSNSISRSSRLVIRASDEAAP--------PPAATAP 163
           V+P++ T+++ +SS  SS++F P      +  SRLV+RA+++ AP        P AA AP
Sbjct: 11  VLPANVTSVAGASSSRSSVSFLPMR----NAGSRLVVRAAEDPAPASSSSKDSPAAAAAP 70

Query: 164 TAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVN 223
             AT    KPKP PIGPKRG+KVKILR+ESYW+K+VGSVV VDQDP TRYPVVVRF KVN
Sbjct: 71  DGATA--TKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVN 130

Query: 224 YASVSTNNYALDEIQEVA 233
           YA++STNNYALDE++EVA
Sbjct: 131 YANISTNNYALDEVEEVA 142

[Close]

BLAST of CsGy2G007920 vs. ExPASy Swiss-Prot
Match: P13194 (Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAE PE=1 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 2.4e-29
Identity = 80/150 (53.33%), Postives = 96/150 (64.00%), Query Frame = 0


Query: 91  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRASDEAAPPPA 150
           MA++N++   S  ++ +     ++    S ++F P N   +    +LV RA +  A  PA
Sbjct: 1   MASTNMASATSRFMLAAGIPSGANGGVSSRVSFLPSNRLGL----KLVARAEEPTAAAPA 60

Query: 151 ATAPTA--------ATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNT 210
             AP A        AT E  K KP P GPKRG KVKILR+ESYWY   GSVVTVDQDPNT
Sbjct: 61  EPAPAADEKPEAAVATKEPAKAKPPPRGPKRGTKVKILRRESYWYNGTGSVVTVDQDPNT 120

Query: 211 RYPVVVRFNKVNYASVSTNNYALDEIQEVA 233
           RYPVVVRF KVNYA VSTNNYALDEI+EVA
Sbjct: 121 RYPVVVRFAKVNYAGVSTNNYALDEIKEVA 146

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BLAST of CsGy2G007920 vs. NCBI nr
Match: KAE8651724.1 (hypothetical protein Csa_006032 [Cucumis sativus])

HSP 1 Score: 443 bits (1139), Expect = 1.87e-156
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MSLSLRYGYVIYMATFNWFKPNIQFFHRLRKFHQQLLPIKHLILSPSTCGYHYFIGFISS 60
           MSLSLRYGYVIYMATFNWFKPNIQFFHRLRKFHQQLLPIKHLILSPSTCGYHYFIGFISS
Sbjct: 1   MSLSLRYGYVIYMATFNWFKPNIQFFHRLRKFHQQLLPIKHLILSPSTCGYHYFIGFISS 60

Query: 61  SSKTINIFFIHQLFEGIEKKDHSKHKRAMAMAASNLSCIASGVVIPSSTTISSSSSRLSS 120
           SSKTINIFFIHQLFEGIEKKDHSKHKRAMAMAASNLSCIASGVVIPSSTTISSSSSRLSS
Sbjct: 61  SSKTINIFFIHQLFEGIEKKDHSKHKRAMAMAASNLSCIASGVVIPSSTTISSSSSRLSS 120

Query: 121 LAFFPKNSNSISRSSRLVIRASDEAAPPPAATAPTAATTEEPKPKPAPIGPKRGAKVKIL 180
           LAFFPKNSNSISRSSRLVIRASDEAAPPPAATAPTAATTEEPKPKPAPIGPKRGAKVKIL
Sbjct: 121 LAFFPKNSNSISRSSRLVIRASDEAAPPPAATAPTAATTEEPKPKPAPIGPKRGAKVKIL 180

Query: 181 RKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIQEVA 232
           RKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIQEVA
Sbjct: 181 RKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIQEVA 232

[Close]

BLAST of CsGy2G007920 vs. NCBI nr
Match: XP_004152807.2 (photosystem I reaction center subunit IV, chloroplastic [Cucumis sativus])

HSP 1 Score: 263 bits (673), Expect = 8.31e-87
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 89  MAMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRASDEAAPP 148
           MAMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRASDEAAPP
Sbjct: 1   MAMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRASDEAAPP 60

Query: 149 PAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 208
           PAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV
Sbjct: 61  PAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 120

Query: 209 RFNKVNYASVSTNNYALDEIQEVA 232
           RFNKVNYASVSTNNYALDEIQEVA
Sbjct: 121 RFNKVNYASVSTNNYALDEIQEVA 144

[Close]

BLAST of CsGy2G007920 vs. NCBI nr
Match: XP_008441802.1 (PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis melo])

HSP 1 Score: 249 bits (637), Expect = 2.67e-81
Identity = 139/146 (95.21%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 89  MAMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRA--SDEAA 148
           MAMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRA  SDEAA
Sbjct: 1   MAMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEAA 60

Query: 149 PPPAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPV 208
           PPP A AP AAT EEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPV
Sbjct: 61  PPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPV 120

Query: 209 VVRFNKVNYASVSTNNYALDEIQEVA 232
           VVRFNKVNYASVSTNNYALDEI+EVA
Sbjct: 121 VVRFNKVNYASVSTNNYALDEIEEVA 146

[Close]

BLAST of CsGy2G007920 vs. NCBI nr
Match: XP_038889433.1 (photosystem I reaction center subunit IV, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 244 bits (623), Expect = 3.36e-79
Identity = 136/144 (94.44%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 91  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRA--SDEAAPP 150
           MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRA  SDEAAPP
Sbjct: 1   MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEAAPP 60

Query: 151 PAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 210
           P A AP AAT EEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV
Sbjct: 61  PPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 120

Query: 211 RFNKVNYASVSTNNYALDEIQEVA 232
           RF+KVNYASVSTNNYALDEI+EVA
Sbjct: 121 RFSKVNYASVSTNNYALDEIEEVA 144

[Close]

BLAST of CsGy2G007920 vs. NCBI nr
Match: KAA0061399.1 (photosystem I reaction center subunit IV [Cucumis melo var. makuwa] >TYK28659.1 photosystem I reaction center subunit IV [Cucumis melo var. makuwa])

HSP 1 Score: 225 bits (574), Expect = 8.54e-72
Identity = 125/132 (94.70%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 103 VVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRA--SDEAAPPPAATAPTAATTE 162
           VVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRA  SDEAAPPP A AP AAT E
Sbjct: 10  VVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEAAPPPPAAAPAAATAE 69

Query: 163 EPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVST 222
           EPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVST
Sbjct: 70  EPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVST 129

Query: 223 NNYALDEIQEVA 232
           NNYALDEI+EVA
Sbjct: 130 NNYALDEIEEVA 141

[Close]

BLAST of CsGy2G007920 vs. ExPASy TrEMBL
Match: A0A0A0LJQ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079660 PE=3 SV=1)

HSP 1 Score: 419 bits (1077), Expect = 1.66e-147
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 13  MATFNWFKPNIQFFHRLRKFHQQLLPIKHLILSPSTCGYHYFIGFISSSSKTINIFFIHQ 72
           MATFNWFKPNIQFFHRLRKFHQQLLPIKHLILSPSTCGYHYFIGFISSSSKTINIFFIHQ
Sbjct: 1   MATFNWFKPNIQFFHRLRKFHQQLLPIKHLILSPSTCGYHYFIGFISSSSKTINIFFIHQ 60

Query: 73  LFEGIEKKDHSKHKRAMAMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSIS 132
           LFEGIEKKDHSKHKRAMAMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSIS
Sbjct: 61  LFEGIEKKDHSKHKRAMAMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSIS 120

Query: 133 RSSRLVIRASDEAAPPPAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGS 192
           RSSRLVIRASDEAAPPPAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGS
Sbjct: 121 RSSRLVIRASDEAAPPPAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGS 180

Query: 193 VVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIQEVA 232
           VVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIQEVA
Sbjct: 181 VVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIQEVA 220

[Close]

BLAST of CsGy2G007920 vs. ExPASy TrEMBL
Match: A0A1S3B3T3 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103485855 PE=3 SV=1)

HSP 1 Score: 249 bits (637), Expect = 1.29e-81
Identity = 139/146 (95.21%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 89  MAMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRA--SDEAA 148
           MAMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRA  SDEAA
Sbjct: 1   MAMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEAA 60

Query: 149 PPPAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPV 208
           PPP A AP AAT EEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPV
Sbjct: 61  PPPPAAAPAAATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPV 120

Query: 209 VVRFNKVNYASVSTNNYALDEIQEVA 232
           VVRFNKVNYASVSTNNYALDEI+EVA
Sbjct: 121 VVRFNKVNYASVSTNNYALDEIEEVA 146

[Close]

BLAST of CsGy2G007920 vs. ExPASy TrEMBL
Match: A0A5A7V6V9 (Photosystem I reaction center subunit IV OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold165G00230 PE=3 SV=1)

HSP 1 Score: 225 bits (574), Expect = 4.14e-72
Identity = 125/132 (94.70%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 103 VVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRA--SDEAAPPPAATAPTAATTE 162
           VVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRA  SDEAAPPP A AP AAT E
Sbjct: 10  VVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEAAPPPPAAAPAAATAE 69

Query: 163 EPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVST 222
           EPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVST
Sbjct: 70  EPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVST 129

Query: 223 NNYALDEIQEVA 232
           NNYALDEI+EVA
Sbjct: 130 NNYALDEIEEVA 141

[Close]

BLAST of CsGy2G007920 vs. ExPASy TrEMBL
Match: A0A6J1FC09 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111444038 PE=3 SV=1)

HSP 1 Score: 214 bits (546), Expect = 7.93e-68
Identity = 122/144 (84.72%), Postives = 129/144 (89.58%), Query Frame = 0


Query: 91  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAS--DEAAPP 150
           MAASNLSCIASGV+IPSSTTISSSS R SS+AFFPKNS SISRS RLV+RA+  + AAPP
Sbjct: 1   MAASNLSCIASGVIIPSSTTISSSS-RPSSVAFFPKNSISISRSCRLVVRAAADEAAAPP 60

Query: 151 PAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 210
           PAA A   A  E PKPKPAPIGPKRG KVKILR+ESYWYKDVGSVVTVDQDPNTRYPVVV
Sbjct: 61  PAAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVV 120

Query: 211 RFNKVNYASVSTNNYALDEIQEVA 232
           RFNKVNYASVSTNNYALDEI+EVA
Sbjct: 121 RFNKVNYASVSTNNYALDEIEEVA 143

[Close]

BLAST of CsGy2G007920 vs. ExPASy TrEMBL
Match: A0A6J1HLT8 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111465716 PE=3 SV=1)

HSP 1 Score: 212 bits (539), Expect = 9.17e-67
Identity = 121/144 (84.03%), Postives = 128/144 (88.89%), Query Frame = 0


Query: 91  MAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAS--DEAAPP 150
           MAASNLSCIASGV+IPSS TISSSS R SS+AFFPKNS SISRS RLV+RA+  + AAPP
Sbjct: 1   MAASNLSCIASGVIIPSSPTISSSS-RPSSVAFFPKNSISISRSCRLVVRAAADEAAAPP 60

Query: 151 PAATAPTAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 210
           PAA A   A  E PKPKPAPIGPKRG KVKILR+ESYWYKDVGSVVTVDQDPNTRYPVVV
Sbjct: 61  PAAAATADAPAEVPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVV 120

Query: 211 RFNKVNYASVSTNNYALDEIQEVA 232
           RFNKVNYASVSTNNYALDEI+EVA
Sbjct: 121 RFNKVNYASVSTNNYALDEIEEVA 143

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BLAST of CsGy2G007920 vs. TAIR 10
Match: AT4G28750.1 (Photosystem I reaction centre subunit IV / PsaE protein )

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-33
Identity = 82/138 (59.42%), Postives = 104/138 (75.36%), Query Frame = 0


Query: 104 VIPSS-TTISSSSSRLSSLAFFPKNSNSISRSSRLVIRASDEAAP--------PPAATAP 163
           V+P++ T+++ +SS  SS++F P      +  SRLV+RA+++ AP        P AA AP
Sbjct: 11  VLPANVTSVAGASSSRSSVSFLPMR----NAGSRLVVRAAEDPAPASSSSKDSPAAAAAP 70

Query: 164 TAATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVN 223
             AT    KPKP PIGPKRG+KVKILR+ESYW+K+VGSVV VDQDP TRYPVVVRF KVN
Sbjct: 71  DGATA--TKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVN 130

Query: 224 YASVSTNNYALDEIQEVA 233
           YA++STNNYALDE++EVA
Sbjct: 131 YANISTNNYALDEVEEVA 142

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BLAST of CsGy2G007920 vs. TAIR 10
Match: AT2G20260.1 (photosystem I subunit E-2 )

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-29
Identity = 76/147 (51.70%), Postives = 102/147 (69.39%), Query Frame = 0


Query: 96  LSCIASGVVIPSSTTIS---SSSSRLSSLAFFPKNSNSISRSSRLVIRASDEAAPPPAAT 155
           ++  A+G ++ ++   +    SS   + ++F P      S  SRLV+RA+++  PP  A+
Sbjct: 3   MTSAATGFILTANVPAAIGGGSSKSTTIVSFLPMR----SFGSRLVVRAAED-TPPATAS 62

Query: 156 APTAATTEEPKP--------KPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRY 215
           + +++TT    P        KP PIGPKRG+KVKILRKESYWYK+VGSVV VDQDP TRY
Sbjct: 63  SDSSSTTAAAAPAKVPAAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQDPKTRY 122

Query: 216 PVVVRFNKVNYASVSTNNYALDEIQEV 232
           PVVVRF KVNYA++STNNYALDE++EV
Sbjct: 123 PVVVRFAKVNYANISTNNYALDEVEEV 144

The following BLAST results are available for this feature:

BLAST of CsGy2G007920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q41229	1.9e-34	56.34	Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestri...	[more]
Q41228	2.1e-33	57.45	Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestri...	[more]
P12354	2.1e-33	67.48	Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q9S831	1.7e-32	59.42	Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thalian...	[more]
P13194	2.4e-29	53.33	Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare OX=45...	[more]

BLAST of CsGy2G007920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651724.1	1.87e-156	100.00	hypothetical protein Csa_006032 [Cucumis sativus]	[more]
XP_004152807.2	8.31e-87	100.00	photosystem I reaction center subunit IV, chloroplastic [Cucumis sativus]	[more]
XP_008441802.1	2.67e-81	95.21	PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis...	[more]
XP_038889433.1	3.36e-79	94.44	photosystem I reaction center subunit IV, chloroplastic-like [Benincasa hispida]	[more]
KAA0061399.1	8.54e-72	94.70	photosystem I reaction center subunit IV [Cucumis melo var. makuwa] >TYK28659.1 ...	[more]

BLAST of CsGy2G007920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJQ1	1.66e-147	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079660 PE=3 SV=1	[more]
A0A1S3B3T3	1.29e-81	95.21	photosystem I reaction center subunit IV, chloroplastic-like OS=Cucumis melo OX=...	[more]
A0A5A7V6V9	4.14e-72	94.70	Photosystem I reaction center subunit IV OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6J1FC09	7.93e-68	84.72	photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita moscha...	[more]
A0A6J1HLT8	9.17e-67	84.03	photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita maxima...	[more]

BLAST of CsGy2G007920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28750.1	1.2e-33	59.42	Photosystem I reaction centre subunit IV / PsaE protein	[more]
AT2G20260.1	2.4e-29	51.70	photosystem I subunit E-2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.30.30.50		coord: 165..232 e-value: 3.9E-36 score: 124.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..174
None	No IPR available	PANTHER	PTHR34549:SF7	PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A	coord: 91..232
IPR003375	Photosystem I PsaE, reaction centre subunit IV	PFAM	PF02427	PSI_PsaE	coord: 172..231 e-value: 2.9E-30 score: 103.7
IPR003375	Photosystem I PsaE, reaction centre subunit IV	PANTHER	PTHR34549	PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A, CHLOROPLASTIC-RELATED	coord: 91..232
IPR008990	Electron transport accessory-like domain superfamily	SUPERFAMILY	50090	Electron transport accessory proteins	coord: 171..231

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G007920.2	CsGy2G007920.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I