CsGy2G005080 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G005080
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	protein NIM1-INTERACTING 3-like
Location	Gy14Chr2: 3481515 .. 3482303 (+)
RNA-Seq Expression	CsGy2G005080
Synteny	CsGy2G005080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATTAAATAGCATATCATGATGAAGCTCTTCACAAATAATAAGTAAACAAAAAGATCAATCACTTTGATCATCTCTTCAAATATCATACATCTCTGTTTTTGCAATTCTCTCTCTAATCCATATCTCACCATTGGAACAAAAAAGGCATGGAAAGTGGAAGAAAAAGAAGAAAATTGCAAGAGGAAGAAGAAGAAGAAGAAGATGAAAAGATGGAGTTGTTCTATGCTTTGATTCAAAACACGAAGGCCATGAGAGACGGAATGAAATATTCAAAAGAATTAACAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCGAAGTTTCAACCAGAAGATTTCAATGAAGAAGATGGTTATAATTACAACAACAAATCCAACATCATTCCTCTTCAATTATCAGCTGCTTCATCTTCAACAACAAAACAATTCAATGAAAAGAAACAACAAGAAGAAGATAAACATTACAAGGTTGTAGAAGTAAAAAAGGGGCTTGACCTTAATCTCTCTCTTTGATTTTTCTTTTTCTTAGTTGTAATTAACAGTTTTATGATGGTTTGCATGCTTTTGATTTTTGTTGATGTGACGACCGAGTTGATAAATGTCTATGGGTGCGATCATACTAGTACTAGTACACTGGATCTCATTAGATCCCTTAAGTTAAGCGTATTTAGACAATAATAGTATTAAGTTGGGTGACCATTTAAAAAGTTCTCATGTTGCACCAAATGTACTTACGAAATCGAATCGAATATCACTCTTGGTGTGGTGTTGGGTCATACACACTGAT

mRNA sequence

CAAATTAAATAGCATATCATGATGAAGCTCTTCACAAATAATAAGTAAACAAAAAGATCAATCACTTTGATCATCTCTTCAAATATCATACATCTCTGTTTTTGCAATTCTCTCTCTAATCCATATCTCACCATTGGAACAAAAAAGGCATGGAAAGTGGAAGAAAAAGAAGAAAATTGCAAGAGGAAGAAGAAGAAGAAGAAGATGAAAAGATGGAGTTGTTCTATGCTTTGATTCAAAACACGAAGGCCATGAGAGACGGAATGAAATATTCAAAAGAATTAACAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCGAAGTTTCAACCAGAAGATTTCAATGAAGAAGATGGTTATAATTACAACAACAAATCCAACATCATTCCTCTTCAATTATCAGCTGCTTCATCTTCAACAACAAAACAATTCAATGAAAAGAAACAACAAGAAGAAGATAAACATTACAAGGTTGTAGAAGTAAAAAAGGGGCTTGACCTTAATCTCTCTCTTTGATTTTTCTTTTTCTTAGTTGTAATTAACAGTTTTATGATGGTTTGCATGCTTTTGATTTTTGTTGATGTGACGACCGAGTTGATAAATGTCTATGGGTGCGATCATACTAGTACTAGTACACTGGATCTCATTAGATCCCTTAAGTTAAGCGTATTTAGACAATAATAGTATTAAGTTGGGTGACCATTTAAAAAGTTCTCATGTTGCACCAAATGTACTTACGAAATCGAATCGAATATCACTCTTGGTGTGGTGTTGGGTCATACACACTGAT

Coding sequence (CDS)

ATGGAAAGTGGAAGAAAAAGAAGAAAATTGCAAGAGGAAGAAGAAGAAGAAGAAGATGAAAAGATGGAGTTGTTCTATGCTTTGATTCAAAACACGAAGGCCATGAGAGACGGAATGAAATATTCAAAAGAATTAACAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCGAAGTTTCAACCAGAAGATTTCAATGAAGAAGATGGTTATAATTACAACAACAAATCCAACATCATTCCTCTTCAATTATCAGCTGCTTCATCTTCAACAACAAAACAATTCAATGAAAAGAAACAACAAGAAGAAGATAAACATTACAAGGTTGTAGAAGTAAAAAAGGGGCTTGACCTTAATCTCTCTCTTTGA

Protein sequence

MESGRKRRKLQEEEEEEEDEKMELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPKFQPEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKHYKVVEVKKGLDLNLSL*

Homology

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BLAST of CsGy2G005080 vs. ExPASy Swiss-Prot
Match: Q9FNZ4 (Protein NIM1-INTERACTING 3 OS=Arabidopsis thaliana OX=3702 GN=NIMIN-3 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 41/123 (33.33%), Postives = 67/123 (54.47%), Query Frame = 0


Query: 5   RKRRKLQEEEEEEEDEKMELFYALIQNTKAMRDGMKYS---KELTEEEKSKGVWNPKFQP 64
           R R++++ E+E++E+EKME  Y +++N + MR  +  S   K   EEE+++    P FQP
Sbjct: 3   RDRKRVKMEKEDDEEEKMEKLYTVLKNAREMRKYVNSSMEKKRQEEEERARVRRFPSFQP 62

Query: 65  EDF---NEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKHYKVVEVKKGLDLN 122
           EDF   N+ +  N    +N         SSS + +++  K+++E     V      LDLN
Sbjct: 63  EDFIFMNKAEANNIEKAAN--------ESSSASNEYDGSKEKQEGSETNVC-----LDLN 112

[Close]

BLAST of CsGy2G005080 vs. NCBI nr
Match: KGN61024.1 (hypothetical protein Csa_021295 [Cucumis sativus])

HSP 1 Score: 227 bits (579), Expect = 1.03e-74
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MESGRKRRKLQEEEEEEEDEKMELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPKFQ 60
           MESGRKRRKLQEEEEEEEDEKMELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPKFQ
Sbjct: 1   MESGRKRRKLQEEEEEEEDEKMELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPKFQ 60

Query: 61  PEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKHYKVVEVKKGLDLNLS 120
           PEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKHYKVVEVKKGLDLNLS
Sbjct: 61  PEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKHYKVVEVKKGLDLNLS 120

[Close]

BLAST of CsGy2G005080 vs. NCBI nr
Match: XP_038889661.1 (protein NIM1-INTERACTING 3 isoform X2 [Benincasa hispida])

HSP 1 Score: 119 bits (299), Expect = 3.51e-32
Identity = 81/114 (71.05%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 1   MESGRKRRKLQEEEEEEEDEK--MELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPK 60
           ME GRKRRKL+EEEEE++DE+  M+L +ALIQN KAMR  MK SKE  EEEKSKGVWNPK
Sbjct: 1   MERGRKRRKLEEEEEEDDDEEGEMKLVFALIQNIKAMRGRMK-SKESPEEEKSKGVWNPK 60

Query: 61  FQPEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEE--DKHYKVVE 110
           FQPEDF E DGY YNNKSNI  LQL AASSSTTK  N KK+Q+E  DKH   +E
Sbjct: 61  FQPEDFIE-DGY-YNNKSNIT-LQLPAASSSTTKHSNPKKEQQEQQDKHKSTLE 110

[Close]

BLAST of CsGy2G005080 vs. NCBI nr
Match: XP_038889662.1 (protein NIM1-INTERACTING 3 isoform X3 [Benincasa hispida])

HSP 1 Score: 119 bits (297), Expect = 6.67e-32
Identity = 80/109 (73.39%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 1   MESGRKRRKLQEEEEEEEDEK--MELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPK 60
           ME GRKRRKL+EEEEE++DE+  M+L +ALIQN KAMR  MK SKE  EEEKSKGVWNPK
Sbjct: 1   MERGRKRRKLEEEEEEDDDEEGEMKLVFALIQNIKAMRGRMK-SKESPEEEKSKGVWNPK 60

Query: 61  FQPEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEE--DKH 105
           FQPEDF E DGY YNNKSNI  LQL AASSSTTK  N KK+Q+E  DKH
Sbjct: 61  FQPEDFIE-DGY-YNNKSNIT-LQLPAASSSTTKHSNPKKEQQEQQDKH 105

[Close]

BLAST of CsGy2G005080 vs. NCBI nr
Match: XP_038889660.1 (protein NIM1-INTERACTING 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 119 bits (297), Expect = 7.50e-32
Identity = 80/109 (73.39%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 1   MESGRKRRKLQEEEEEEEDEK--MELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPK 60
           ME GRKRRKL+EEEEE++DE+  M+L +ALIQN KAMR  MK SKE  EEEKSKGVWNPK
Sbjct: 1   MERGRKRRKLEEEEEEDDDEEGEMKLVFALIQNIKAMRGRMK-SKESPEEEKSKGVWNPK 60

Query: 61  FQPEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEE--DKH 105
           FQPEDF E DGY YNNKSNI  LQL AASSSTTK  N KK+Q+E  DKH
Sbjct: 61  FQPEDFIE-DGY-YNNKSNIT-LQLPAASSSTTKHSNPKKEQQEQQDKH 105

[Close]

BLAST of CsGy2G005080 vs. NCBI nr
Match: KAG6599168.1 (hypothetical protein SDJN03_08946, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112 bits (279), Expect = 8.60e-29
Identity = 71/141 (50.35%), Postives = 95/141 (67.38%), Query Frame = 0


Query: 1   MESGRKRRKLQ------------EEEEEEEDEKMELFYALIQNTKAMRDGMKYSKELTEE 60
           ME GRKRRKLQ            E+E+E+E+EKM+LF+ALIQNTKAMRD +K  +   E+
Sbjct: 1   MEGGRKRRKLQNIEEDDDDEEEDEDEDEDEEEKMKLFFALIQNTKAMRDKIKSKESAEED 60

Query: 61  EKSKGVWNPKFQPEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKHYK- 120
             +KGVWNPKFQPEDF E DG++ +   +   ++L AASSS TKQ N+K++ +E + ++ 
Sbjct: 61  NPTKGVWNPKFQPEDFIE-DGFDTHKSKSKAAIELGAASSSATKQSNQKEEHQEHQEHQE 120

[Close]

BLAST of CsGy2G005080 vs. ExPASy TrEMBL
Match: A0A0A0LJ23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034770 PE=3 SV=1)

HSP 1 Score: 227 bits (579), Expect = 5.01e-75
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MESGRKRRKLQEEEEEEEDEKMELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPKFQ 60
           MESGRKRRKLQEEEEEEEDEKMELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPKFQ
Sbjct: 1   MESGRKRRKLQEEEEEEEDEKMELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPKFQ 60

Query: 61  PEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKHYKVVEVKKGLDLNLS 120
           PEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKHYKVVEVKKGLDLNLS
Sbjct: 61  PEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKHYKVVEVKKGLDLNLS 120

[Close]

BLAST of CsGy2G005080 vs. ExPASy TrEMBL
Match: A0A6J1DQG7 (LOW QUALITY PROTEIN: uncharacterized protein LOC111023284 OS=Momordica charantia OX=3673 GN=LOC111023284 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.20e-23
Identity = 67/127 (52.76%), Postives = 90/127 (70.87%), Query Frame = 0


Query: 1   MESGRKRRKLQEEE------EEEEDEKMELFYALIQNTKAMRDGMKYSKELTEEEKSKGV 60
           MES R++RKLQ++E      +EEE+EKM+LF+ALIQNTK++RD +K  +   +++KSKGV
Sbjct: 1   MESVRRKRKLQDDEKEAQKEDEEEEEKMKLFFALIQNTKSIRDRVKSKQSAPQQDKSKGV 60

Query: 61  WNPKFQPEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKHYKVVEVKKG 120
           WNPKFQPEDF E+     + KSN  P     A+SS+TKQ N  KQ+EE++    VE  + 
Sbjct: 61  WNPKFQPEDFIED----CDKKSNPTPQ---FAASSSTKQRN--KQEEEEQGKDKVEGIED 118

[Close]

BLAST of CsGy2G005080 vs. ExPASy TrEMBL
Match: A0A5N5GZ17 (Protein NIM1-INTERACTING 1 OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_039459 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.74e-12
Identity = 53/129 (41.09%), Postives = 75/129 (58.14%), Query Frame = 0


Query: 1   MESGRKRRKLQEEEEEEEDEKMELFYALIQNTKAMR-------DGMKYSKELTEEE-KSK 60
           ME G K+RK+++EEEE+E+EK+E FYALI +T+ +R       +G K  K+  +EE K+ 
Sbjct: 1   MEGGGKKRKMEDEEEEDEEEKIEKFYALITSTREVRQLLRGNSNGSKEKKDKKKEEGKAA 60

Query: 61  GVWNPKFQPEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKHYKVVEVK 120
           G WNP FQPEDF E+          I    +  +S         K +QEE++ YK  E K
Sbjct: 61  GGWNPTFQPEDFLED--------VKISGHHIGGSS---------KGKQEEEEEYKKEEDK 112

[Close]

BLAST of CsGy2G005080 vs. ExPASy TrEMBL
Match: A0A4V3WPK6 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_027004 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.81e-11
Identity = 52/132 (39.39%), Postives = 83/132 (62.88%), Query Frame = 0


Query: 1   MESGRKRRKLQEEEEEEEDEKMELFYALIQNTK-AMRDGMKYSKELTEEEKSKG----VW 60
           M+   ++RK++ EEE++++EKM+ F+ALI++T+ A +  M  + +L EEEK+KG     W
Sbjct: 1   MDGESRKRKMENEEEDDDEEKMQKFFALIRSTRDARKRVMSGADKLQEEEKTKGKPAEAW 60

Query: 61  NPKFQPEDFNEEDGYNYNNKSNIIP------LQLSAASSSTTKQFNEKKQQEEDKHYKVV 120
           NP FQPEDF E  G    ++S   P      L L+ A +  +K+ +E K+QE+++ +K  
Sbjct: 61  NPSFQPEDFMEGGG----DQSKAPPPPPQASLALALAVAGPSKREDEAKEQEQEEDHKRG 120

[Close]

BLAST of CsGy2G005080 vs. ExPASy TrEMBL
Match: A0A2H5Q8H6 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_206020 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.42e-11
Identity = 52/129 (40.31%), Postives = 68/129 (52.71%), Query Frame = 0


Query: 7   RRKLQEEE---EEEEDEKMELFYALIQNTKAMRDGMKYSKELTEEE-----------KSK 66
           +RKLQ EE   +E E+EK+E F+ALI+NTK M D ++ S+ L EE+           K  
Sbjct: 16  KRKLQNEELQEQENEEEKVEQFFALIRNTKEMHDRLRNSEGLKEEKEKEMEQEIKAAKVS 75

Query: 67  GVWNPKFQPEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKHYKVVEVK 121
             WNP FQPEDF E D  N N   N         SSS  ++  E+K++ E +     E  
Sbjct: 76  AAWNPTFQPEDFTEGDINNINASKNFFSENQQVGSSSKIQENEEEKEKAEARK----EAN 135

[Close]

BLAST of CsGy2G005080 vs. TAIR 10
Match: AT1G09415.1 (NIM1-interacting 3 )

HSP 1 Score: 47.8 bits (112), Expect = 7.5e-06
Identity = 41/123 (33.33%), Postives = 67/123 (54.47%), Query Frame = 0


Query: 5   RKRRKLQEEEEEEEDEKMELFYALIQNTKAMRDGMKYS---KELTEEEKSKGVWNPKFQP 64
           R R++++ E+E++E+EKME  Y +++N + MR  +  S   K   EEE+++    P FQP
Sbjct: 3   RDRKRVKMEKEDDEEEKMEKLYTVLKNAREMRKYVNSSMEKKRQEEEERARVRRFPSFQP 62

Query: 65  EDF---NEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKHYKVVEVKKGLDLN 122
           EDF   N+ +  N    +N         SSS + +++  K+++E     V      LDLN
Sbjct: 63  EDFIFMNKAEANNIEKAAN--------ESSSASNEYDGSKEKQEGSETNVC-----LDLN 112

The following BLAST results are available for this feature:

BLAST of CsGy2G005080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNZ4	1.1e-04	33.33	Protein NIM1-INTERACTING 3 OS=Arabidopsis thaliana OX=3702 GN=NIMIN-3 PE=1 SV=1	[more]

BLAST of CsGy2G005080 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61024.1	1.03e-74	100.00	hypothetical protein Csa_021295 [Cucumis sativus]	[more]
XP_038889661.1	3.51e-32	71.05	protein NIM1-INTERACTING 3 isoform X2 [Benincasa hispida]	[more]
XP_038889662.1	6.67e-32	73.39	protein NIM1-INTERACTING 3 isoform X3 [Benincasa hispida]	[more]
XP_038889660.1	7.50e-32	73.39	protein NIM1-INTERACTING 3 isoform X1 [Benincasa hispida]	[more]
KAG6599168.1	8.60e-29	50.35	hypothetical protein SDJN03_08946, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsGy2G005080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ23	5.01e-75	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034770 PE=3 SV=1	[more]
A0A6J1DQG7	5.20e-23	52.76	LOW QUALITY PROTEIN: uncharacterized protein LOC111023284 OS=Momordica charantia...	[more]
A0A5N5GZ17	4.74e-12	41.09	Protein NIM1-INTERACTING 1 OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D...	[more]
A0A4V3WPK6	1.81e-11	39.39	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0270...	[more]
A0A2H5Q8H6	3.42e-11	40.31	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_206020 PE=3 SV=1	[more]

BLAST of CsGy2G005080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09415.1	7.5e-06	33.33	NIM1-interacting 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031425	NPR1/NH1-interacting protein	PFAM	PF15699	NPR1_interact	coord: 14..118 e-value: 3.3E-19 score: 69.5
IPR031425	NPR1/NH1-interacting protein	PANTHER	PTHR33669	PROTEIN NEGATIVE REGULATOR OF RESISTANCE	coord: 3..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR33669:SF4	PROTEIN NIM1-INTERACTING 3	coord: 3..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G005080.2	CsGy2G005080.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance
cellular_component	GO:0005634	nucleus