CsGy2G004560 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G004560
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	TPR_REGION domain-containing protein
Location	Gy14Chr2: 3148866 .. 3153009 (+)
RNA-Seq Expression	CsGy2G004560
Synteny	CsGy2G004560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTGGCGCCTTATCTTCCTCAAATTAGCACTGAGCTCAGCCTCAGTCTTCTTCAATTTCATCGAATTTTTCATCAATGGCTACGTCTTCCAGTCTCAAATCCTCCATTTCCGTCTCCCATTCGCTTCACAAATCTTTCACCGCCCCTTCTTTCACCAATTCAACCAAAACCATCGAAGTTTTCCACTCTCCGAGCTCTCTTCCGATGAGAATCACGCTCAATCACGTTCCCCCATTGTCATTATCTAGACGGCTGTTCGTTCCTTCCGTCTCTGGAATTTGGGACGCCTTAACAGGGGGAAACAACCCTCGTGACGCTGTTGCTGCTATTCGACGTGGAATGCTTCTCTTTAGGCAGGTAGGTTTTTCTCTTAATTTGCCTAAAATTGCTTCTAGTGTTACTATCTTTGGCTTGAATTTGTTTAAATTTTTTTGTTTCTAAGGGCGATGTTTTGGGATCTTTAGCTGAATTCGATAAGGCAATTGAATTGGATCCTCGTCAAAAGGCATGTAGGTTTCTAAACTTTGCGGCGATGTTCGTAATTTAATTTGAAAATTGAAATTGGTTTTGTTAGCTTAACTATCAACCAGGAGTCTGTTTTAGTTCTGAATGATAACGAAATGAAAACTCTTAATTCGAATAGGGATATATTGCTTTGGAGTTCACTGGAAAGGAAATTGAAATTATTACTGATTAGGAGTTAGGATTATTGATTTATTCCTAATCCATAGCAGTGCATTAGTTAATTAATATAGATTTTGTTATCGTTGTTATCAGATCTTTGGCAAAGAGGGCTTTCACTTTACTACCTTGATAGGTACCAATCTTCTTCAATTTTTCTTTTCTACTACATTTATGTCTTATGATAGTAACAAATGCAGAGAAGAAGCAGAAATGGGTTTGTCAAGTCATTGAAAAATATTTTTTTTTGCATCTGCTTGAGTTAGCATTGGTACAAATAAAATTATGTTAATTTGGATGAGTTTGAATAGTTGAAGTAGGAATCTCTTTTTAGATTTGAAGAGGGAGCCGAACAGTTCCGACTAGATGTTGCACAAAATCCAAACGACACAGAGGAGTCGATTTGGTGCTTTCTTTGTGAAGCTCAATTGTATGGAGTTGATGAAGCAAGAAGGCGATTTCTTGAGGTAAGCTAAAATTTGATTGTGGCAAAATATCTTTGAGATGATAAAAGCACGGATGAAATATTTGCATGAGAGTGATGGAGTGAGTTTAAGATGAATTTTGCTTAAAATAATTGGGAGTTAGGGGTTTCGAAACTCTCACCTTTAGGATGAAAGGTCATGTCAATTACCGCTGTGTGACGAGTTTGAGATGAATTTTGAGGGTGGTGTTTTAAGTGAAACACATTTTTTGTTTTCAAGAAACACTAATTAATTTATAGCAAACTCATCATAATCATATTTGGAAGTTTTACAATGAATGCAGGTAGGTAGAGATCCACGACCAGTCATGCGGGAAGCTTACAACATGTTTAAAGATGGTGGCCATCCGGAGAAAGTACGGAATTTCTGCCTATTTTGAATTATCTTTGATTTTCCTTTTAAGTCATTTGGTCACTACCTTTGTTCTTTCTGAAGTATCTATTATTCTGTTTAAATAATTTTCAATGCTGTTGCCCCGACGTAATTCGCTTGTTGACAAACGATCTCTAAGTTACTTTTTAGATGCACCATTTTGCTAAGTGTGTTGTTTAATTTTCTAGATTATGAGCTGACAGAAGAGTTGTTTTTACTTCATAGCTTGTTGCTGCCTTCTCAAGTGGCCGTGAGAACGAATATTTTTATGCCTCTCTATATGCCGGGCTTTATCATGAAGCAGAGGTTAGGTTAAAACACTTGCTAACTCTTTACTGTTTTTTAGTCTCTGAAAAATCATTGAATAATAACCCGAAGTAATATTCTTGTCCTTTTACCATGCCCACAACTATGAGATTCAGGCTTTTCTTTGATAGCTACATAACTAGGATCAAACATTCTGTTATTCTAAAGTAGAACATATCATCTTGCAATAGAATTGAAATCATACCCCAATTATTAGATTGTGCTCATGATCTAATGTCAATGGTTTTCTGAGCAGTTTCACCCAACCAAAGGTTGGTTCGGAAAGGCAACAAGGAAGGATTCTAAGTTATTAAGTTTGATCATTTGGACTTTTTAAATTTAAGCTTCTAAACACTACTTCTACCTTCGAGTTTTGTTGCAAACCGTATTTTTAAAAACAAAGTCAAGTTTTAAAAATTAAAAATAACAATAAAACTTTGTTTTTGTTTTTAAAATTTGACTAAGAATTCAATTGTATATTTAAGAAAACGAAAAGTATAGAAAGAAAAATTATAAGTGAACAAAGTATAATATATATATTTTTATGAGAAACGATTTCATTGAATAAATGAAATATCCAAGAGTATATAAAAGACTCTTTCGAAGAGCGTACAGGTAAGATCCCTTTGAAGAGTATACAAATGATGCTAATTCCAATTTTTTATTAAAGAAGAAAACCTAGGGCTCTTGATCATCTGTATATCTTTACACCATAAGAAGGCATTTGTGATCGCTAACTCTAAAACCTCCAATCTCCTTGAAAAATTTGTCTGTGCACTGAAAAATTCTACCATCTCTCTCCCCAAACCTTCCACAAAATAGCTGAGTCTGATCTCCTCAGTATACTCATGATGTGTCTTCCATCCTCCGTAAAGTTTGTTCTACTCAAGATTTGGGATAAAGTATTTTGTGATGAGGCTGTTCCAATTGAGTCGCAGAAATGCTTGACAGCTTGGGTCCAAAGTACTTTCCTAAACAATGACAGACATTTCTTTAAGGAGAAGAAGCATTTTATCCTCAAACTTTGCCTCTCTTAAGCCAACCCAGGTGCTTATCTTCACTGTAAAGTATCCAATAATTCTGCTTTTGGGATCATAACCTAGCATGTTGACATATCCAACTCACTCAATGAAGTTAAATATTAAAATAGGTGTCTTCTTTTCTACAACCTCTCCCACATGCTCGAAAAAAGCATACATTTCAAAAATAGAAAACTGAAATGAAAGAATTATAAAAATTGGGGGAAAATTTTCAACTTAGGAAAATGAAGTTTGAGCTTAAAAGTTATCTCCAAACATCTGAACTCCTGATTTTATACCCTTTCAGAGTAATAACAACTACACTAGTTGAAGTTTATCTCCTTAACTACCCTAGTTACAATATCTAATCAAACAAAAGGTTTATTTTTAGGACTAGTTTGATACCCATTAGCTTTTAGTTTAAATAGCATACTCCAATAAACTCAATCAAGAAAACACACTTGTCAATCCTTATGATTTTTATGGATGTACCAAAACTGTGTTTCATGTGGAGATAAGATGACGCAAGCATAATACTTGGTTCCAGCATAAAAATCATTTGCAATATTTCTTCTCTAGAACGGCTGGAAAGTGATTTTCTGGGATTGTATTTTCCTTTTCGCAGAAAAAAGTAGATGCAGCTAAACAAGATATAGTTGCAGCTTGCCAGTCTACATATGCACAGAGGTATGAGTCTACAATAAATAAAGTTCAAAGAAATCCATGTCTTTTGTGCAACCAATTTAATTAGTTCAAGTTTAAATGGTAAATTTGGTTCTATCATGGTTAGAATTTAGTCCAAATGATTTATCATAAAATCCTCATAAATAGTTCTTAAGGACTAAATTATAGGTTTTAAAAACCACAAAGACTGAACTCTAACTTTCTTCAAACAATGCAGACAAAAGTTATAATGGAAGTTCGATTAATGGGCAATGTCTCTCCTCTTTTCAGGTCTGATGATTACATGGCAGCTCTTGCCAAAGTTCACTGCCTCTGTCGAAACTGGAGTTTCAGTTAGTAAAATTCTAAGCTATATTCTACCGTTCCTTTTCCTTCTTGTGTACAATCTACTTTTTCAGATCGAGATTCAGATTCTAATGAATCTTTGGGGGTTACTGAGATTGTTGACCAAAAAAATTGTTGGCTTGAAGCTTCTATTAGTAATATATTTACTTCAAGTTAGGTCAAAAGAAGAAAGAAAGAATGTTGGAAATATGTTAGAGTGTGATTTTGAATGTAACGAGAGTGATTTTAAATCATTGTTTTCTTGAAAACT

mRNA sequence

ATTTTGGCGCCTTATCTTCCTCAAATTAGCACTGAGCTCAGCCTCAGTCTTCTTCAATTTCATCGAATTTTTCATCAATGGCTACGTCTTCCAGTCTCAAATCCTCCATTTCCGTCTCCCATTCGCTTCACAAATCTTTCACCGCCCCTTCTTTCACCAATTCAACCAAAACCATCGAAGTTTTCCACTCTCCGAGCTCTCTTCCGATGAGAATCACGCTCAATCACGTTCCCCCATTGTCATTATCTAGACGGCTGTTCGTTCCTTCCGTCTCTGGAATTTGGGACGCCTTAACAGGGGGAAACAACCCTCGTGACGCTGTTGCTGCTATTCGACGTGGAATGCTTCTCTTTAGGCAGGGCGATGTTTTGGGATCTTTAGCTGAATTCGATAAGGCAATTGAATTGGATCCTCGTCAAAAGGCATATCTTTGGCAAAGAGGGCTTTCACTTTACTACCTTGATAGATTTGAAGAGGGAGCCGAACAGTTCCGACTAGATGTTGCACAAAATCCAAACGACACAGAGGAGTCGATTTGGTGCTTTCTTTGTGAAGCTCAATTGTATGGAGTTGATGAAGCAAGAAGGCGATTTCTTGAGGTAGGTAGAGATCCACGACCAGTCATGCGGGAAGCTTACAACATGTTTAAAGATGGTGGCCATCCGGAGAAACTTGTTGCTGCCTTCTCAAGTGGCCGTGAGAACGAATATTTTTATGCCTCTCTATATGCCGGGCTTTATCATGAAGCAGAGAAAAAAGTAGATGCAGCTAAACAAGATATAGTTGCAGCTTGCCAGTCTACATATGCACAGAGGTCTGATGATTACATGGCAGCTCTTGCCAAAGTTCACTGCCTCTGTCGAAACTGGAGTTTCAGTTAGTAAAATTCTAAGCTATATTCTACCGTTCCTTTTCCTTCTTGTGTACAATCTACTTTTTCAGATCGAGATTCAGATTCTAATGAATCTTTGGGGGTTACTGAGATTGTTGACCAAAAAAATTGTTGGCTTGAAGCTTCTATTAGTAATATATTTACTTCAAGTTAGGTCAAAAGAAGAAAGAAAGAATGTTGGAAATATGTTAGAGTGTGATTTTGAATGTAACGAGAGTGATTTTAAATCATTGTTTTCTTGAAAACT

Coding sequence (CDS)

ATGGCTACGTCTTCCAGTCTCAAATCCTCCATTTCCGTCTCCCATTCGCTTCACAAATCTTTCACCGCCCCTTCTTTCACCAATTCAACCAAAACCATCGAAGTTTTCCACTCTCCGAGCTCTCTTCCGATGAGAATCACGCTCAATCACGTTCCCCCATTGTCATTATCTAGACGGCTGTTCGTTCCTTCCGTCTCTGGAATTTGGGACGCCTTAACAGGGGGAAACAACCCTCGTGACGCTGTTGCTGCTATTCGACGTGGAATGCTTCTCTTTAGGCAGGGCGATGTTTTGGGATCTTTAGCTGAATTCGATAAGGCAATTGAATTGGATCCTCGTCAAAAGGCATATCTTTGGCAAAGAGGGCTTTCACTTTACTACCTTGATAGATTTGAAGAGGGAGCCGAACAGTTCCGACTAGATGTTGCACAAAATCCAAACGACACAGAGGAGTCGATTTGGTGCTTTCTTTGTGAAGCTCAATTGTATGGAGTTGATGAAGCAAGAAGGCGATTTCTTGAGGTAGGTAGAGATCCACGACCAGTCATGCGGGAAGCTTACAACATGTTTAAAGATGGTGGCCATCCGGAGAAACTTGTTGCTGCCTTCTCAAGTGGCCGTGAGAACGAATATTTTTATGCCTCTCTATATGCCGGGCTTTATCATGAAGCAGAGAAAAAAGTAGATGCAGCTAAACAAGATATAGTTGCAGCTTGCCAGTCTACATATGCACAGAGGTCTGATGATTACATGGCAGCTCTTGCCAAAGTTCACTGCCTCTGTCGAAACTGGAGTTTCAGTTAG

Protein sequence

MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRLFVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPRPVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQSTYAQRSDDYMAALAKVHCLCRNWSFS*

Homology

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BLAST of CsGy2G004560 vs. ExPASy Swiss-Prot
Match: Q1C3L9 (Lipoprotein NlpI OS=Yersinia pestis bv. Antiqua (strain Antiqua) OX=360102 GN=nlpI PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.0e-04
Identity = 23/75 (30.67%), Postives = 37/75 (49.33%), Query Frame = 0


Query: 88  GMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPN 147
           G+ L + G+   +   FD  +ELDP        RG++LYY  RF    +  +     +PN
Sbjct: 103 GIYLTQAGNFDAAYEAFDSVLELDPTYNYARLNRGIALYYGGRFPLAQDDLQAFYQDDPN 162

Query: 148 DTEESIWCFLCEAQL 163
           D   S+W +L E ++
Sbjct: 163 DPFRSLWLYLVEREI 177

[Close]

BLAST of CsGy2G004560 vs. ExPASy Swiss-Prot
Match: Q7CKI5 (Lipoprotein NlpI OS=Yersinia pestis OX=632 GN=nlpI PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.0e-04
Identity = 23/75 (30.67%), Postives = 37/75 (49.33%), Query Frame = 0


Query: 88  GMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPN 147
           G+ L + G+   +   FD  +ELDP        RG++LYY  RF    +  +     +PN
Sbjct: 103 GIYLTQAGNFDAAYEAFDSVLELDPTYNYARLNRGIALYYGGRFPLAQDDLQAFYQDDPN 162

Query: 148 DTEESIWCFLCEAQL 163
           D   S+W +L E ++
Sbjct: 163 DPFRSLWLYLVEREI 177

[Close]

BLAST of CsGy2G004560 vs. ExPASy Swiss-Prot
Match: Q1CM50 (Lipoprotein NlpI OS=Yersinia pestis bv. Antiqua (strain Nepal516) OX=377628 GN=nlpI PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.0e-04
Identity = 23/75 (30.67%), Postives = 37/75 (49.33%), Query Frame = 0


Query: 88  GMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPN 147
           G+ L + G+   +   FD  +ELDP        RG++LYY  RF    +  +     +PN
Sbjct: 103 GIYLTQAGNFDAAYEAFDSVLELDPTYNYARLNRGIALYYGGRFPLAQDDLQAFYQDDPN 162

Query: 148 DTEESIWCFLCEAQL 163
           D   S+W +L E ++
Sbjct: 163 DPFRSLWLYLVEREI 177

[Close]

BLAST of CsGy2G004560 vs. NCBI nr
Match: XP_004144772.1 (uncharacterized protein LOC101209381 [Cucumis sativus] >KGN60968.1 hypothetical protein Csa_021366 [Cucumis sativus])

HSP 1 Score: 535 bits (1379), Expect = 7.14e-192
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60
           MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL
Sbjct: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60

Query: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 120
           FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ
Sbjct: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 120

Query: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180
           RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR
Sbjct: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180

Query: 181 PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ 240
           PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ
Sbjct: 181 PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ 240

Query: 241 STYAQRSDDYMAALAKVHCLCRNWSFS 267
           STYAQRSDDYMAALAKVHCLCRNWSFS
Sbjct: 241 STYAQRSDDYMAALAKVHCLCRNWSFS 267

[Close]

BLAST of CsGy2G004560 vs. NCBI nr
Match: TYJ96494.1 (uncharacterized protein E5676_scaffold546G001400 [Cucumis melo var. makuwa])

HSP 1 Score: 510 bits (1313), Expect = 8.53e-182
Identity = 254/267 (95.13%), Postives = 260/267 (97.38%), Query Frame = 0


Query: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60
           MAT+S LKSSIS+SHSLH SFTAPSF NS+KTIE FHSP+SLP+RITLNHVPPLSLSRRL
Sbjct: 1   MATNSILKSSISISHSLHNSFTAPSFANSSKTIENFHSPTSLPIRITLNHVPPLSLSRRL 60

Query: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 120
           FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ
Sbjct: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 120

Query: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180
           RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR
Sbjct: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180

Query: 181 PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ 240
           PVMREAYNMFK+GGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQ IVAACQ
Sbjct: 181 PVMREAYNMFKNGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQHIVAACQ 240

Query: 241 STYAQRSDDYMAALAKVHCLCRNWSFS 267
           STY QRSDDYMAALAKVHCL RNWSFS
Sbjct: 241 STYGQRSDDYMAALAKVHCLRRNWSFS 267

[Close]

BLAST of CsGy2G004560 vs. NCBI nr
Match: XP_008453971.1 (PREDICTED: uncharacterized protein LOC103494530 [Cucumis melo] >KAA0048042.1 uncharacterized protein E6C27_scaffold385G001100 [Cucumis melo var. makuwa])

HSP 1 Score: 504 bits (1298), Expect = 1.65e-179
Identity = 252/267 (94.38%), Postives = 258/267 (96.63%), Query Frame = 0


Query: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60
           MAT+S LKSSIS+SHSLH SFTAPSF NS+KTIE FHSP+SLP+RITLNHVPPLSLSRRL
Sbjct: 1   MATNSILKSSISISHSLHNSFTAPSFANSSKTIENFHSPTSLPIRITLNHVPPLSLSRRL 60

Query: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 120
           FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVL SLAEFDKAIELDPRQKAYLWQ
Sbjct: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLESLAEFDKAIELDPRQKAYLWQ 120

Query: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180
           RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR
Sbjct: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180

Query: 181 PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ 240
           PVMREAYNMFK+GGHPEKLVAAFSSGR NEYFYASLYAGLYHEAEKKVDAAKQ IVAACQ
Sbjct: 181 PVMREAYNMFKNGGHPEKLVAAFSSGRVNEYFYASLYAGLYHEAEKKVDAAKQHIVAACQ 240

Query: 241 STYAQRSDDYMAALAKVHCLCRNWSFS 267
           STY QRSDDYMAALAKVHCL RNWSFS
Sbjct: 241 STYGQRSDDYMAALAKVHCLRRNWSFS 267

[Close]

BLAST of CsGy2G004560 vs. NCBI nr
Match: XP_038889663.1 (uncharacterized protein LOC120079523 [Benincasa hispida])

HSP 1 Score: 503 bits (1295), Expect = 4.56e-179
Identity = 249/267 (93.26%), Postives = 255/267 (95.51%), Query Frame = 0


Query: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60
           MA  SSLKSSIS+SHSLH  F APSF NSTKT+E+ HSPSSLPMRITLNHVPPLSLSRRL
Sbjct: 1   MAAISSLKSSISISHSLHIPFIAPSFPNSTKTLEISHSPSSLPMRITLNHVPPLSLSRRL 60

Query: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 120
           FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ
Sbjct: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 120

Query: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180
           RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRD R
Sbjct: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDSR 180

Query: 181 PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ 240
           PVMREAYNMFKDGGHPEKL+AAFSSGRENEYFYASLYAGLYHEAEKK+DAAKQ IVAACQ
Sbjct: 181 PVMREAYNMFKDGGHPEKLIAAFSSGRENEYFYASLYAGLYHEAEKKLDAAKQHIVAACQ 240

Query: 241 STYAQRSDDYMAALAKVHCLCRNWSFS 267
           S Y QRSDDYMAAL +VHCLCRNWSFS
Sbjct: 241 SPYGQRSDDYMAALTRVHCLCRNWSFS 267

[Close]

BLAST of CsGy2G004560 vs. NCBI nr
Match: XP_022999589.1 (uncharacterized protein LOC111493913 isoform X3 [Cucurbita maxima])

HSP 1 Score: 487 bits (1254), Expect = 7.52e-173
Identity = 243/265 (91.70%), Postives = 249/265 (93.96%), Query Frame = 0


Query: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60
           MA  SSLK SIS+S S H SFTAPS  NSTK +E  HSPSSLPMRI LNHVPPLSLSRRL
Sbjct: 1   MAAISSLKPSISMSRSFHISFTAPSLPNSTKPLENLHSPSSLPMRIKLNHVPPLSLSRRL 60

Query: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 120
           FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFR+GDV GSLAEFDKAIELDPRQKAYLWQ
Sbjct: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFREGDVSGSLAEFDKAIELDPRQKAYLWQ 120

Query: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180
           RGLSLYYLDRFEEGAEQFRLDVAQNP+DTEESIWCF+CEAQLYGVDEARRRFLEVGRDPR
Sbjct: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPSDTEESIWCFVCEAQLYGVDEARRRFLEVGRDPR 180

Query: 181 PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ 240
           PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKK+DAAKQ IVAACQ
Sbjct: 181 PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKLDAAKQHIVAACQ 240

Query: 241 STYAQRSDDYMAALAKVHCLCRNWS 265
           S Y QRSDDYMAALAKVHCLCRNWS
Sbjct: 241 SPYGQRSDDYMAALAKVHCLCRNWS 265

[Close]

BLAST of CsGy2G004560 vs. ExPASy TrEMBL
Match: A0A0A0LGH0 (TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G032740 PE=4 SV=1)

HSP 1 Score: 535 bits (1379), Expect = 3.45e-192
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60
           MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL
Sbjct: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60

Query: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 120
           FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ
Sbjct: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 120

Query: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180
           RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR
Sbjct: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180

Query: 181 PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ 240
           PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ
Sbjct: 181 PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ 240

Query: 241 STYAQRSDDYMAALAKVHCLCRNWSFS 267
           STYAQRSDDYMAALAKVHCLCRNWSFS
Sbjct: 241 STYAQRSDDYMAALAKVHCLCRNWSFS 267

[Close]

BLAST of CsGy2G004560 vs. ExPASy TrEMBL
Match: A0A5D3BC02 (TPR_REGION domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001400 PE=4 SV=1)

HSP 1 Score: 510 bits (1313), Expect = 4.13e-182
Identity = 254/267 (95.13%), Postives = 260/267 (97.38%), Query Frame = 0


Query: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60
           MAT+S LKSSIS+SHSLH SFTAPSF NS+KTIE FHSP+SLP+RITLNHVPPLSLSRRL
Sbjct: 1   MATNSILKSSISISHSLHNSFTAPSFANSSKTIENFHSPTSLPIRITLNHVPPLSLSRRL 60

Query: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 120
           FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ
Sbjct: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 120

Query: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180
           RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR
Sbjct: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180

Query: 181 PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ 240
           PVMREAYNMFK+GGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQ IVAACQ
Sbjct: 181 PVMREAYNMFKNGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQHIVAACQ 240

Query: 241 STYAQRSDDYMAALAKVHCLCRNWSFS 267
           STY QRSDDYMAALAKVHCL RNWSFS
Sbjct: 241 STYGQRSDDYMAALAKVHCLRRNWSFS 267

[Close]

BLAST of CsGy2G004560 vs. ExPASy TrEMBL
Match: A0A5A7TX07 (TPR_REGION domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001100 PE=4 SV=1)

HSP 1 Score: 504 bits (1298), Expect = 7.99e-180
Identity = 252/267 (94.38%), Postives = 258/267 (96.63%), Query Frame = 0


Query: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60
           MAT+S LKSSIS+SHSLH SFTAPSF NS+KTIE FHSP+SLP+RITLNHVPPLSLSRRL
Sbjct: 1   MATNSILKSSISISHSLHNSFTAPSFANSSKTIENFHSPTSLPIRITLNHVPPLSLSRRL 60

Query: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 120
           FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVL SLAEFDKAIELDPRQKAYLWQ
Sbjct: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLESLAEFDKAIELDPRQKAYLWQ 120

Query: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180
           RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR
Sbjct: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180

Query: 181 PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ 240
           PVMREAYNMFK+GGHPEKLVAAFSSGR NEYFYASLYAGLYHEAEKKVDAAKQ IVAACQ
Sbjct: 181 PVMREAYNMFKNGGHPEKLVAAFSSGRVNEYFYASLYAGLYHEAEKKVDAAKQHIVAACQ 240

Query: 241 STYAQRSDDYMAALAKVHCLCRNWSFS 267
           STY QRSDDYMAALAKVHCL RNWSFS
Sbjct: 241 STYGQRSDDYMAALAKVHCLRRNWSFS 267

[Close]

BLAST of CsGy2G004560 vs. ExPASy TrEMBL
Match: A0A1S3BXM7 (uncharacterized protein LOC103494530 OS=Cucumis melo OX=3656 GN=LOC103494530 PE=4 SV=1)

HSP 1 Score: 504 bits (1298), Expect = 7.99e-180
Identity = 252/267 (94.38%), Postives = 258/267 (96.63%), Query Frame = 0


Query: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60
           MAT+S LKSSIS+SHSLH SFTAPSF NS+KTIE FHSP+SLP+RITLNHVPPLSLSRRL
Sbjct: 1   MATNSILKSSISISHSLHNSFTAPSFANSSKTIENFHSPTSLPIRITLNHVPPLSLSRRL 60

Query: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 120
           FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVL SLAEFDKAIELDPRQKAYLWQ
Sbjct: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLESLAEFDKAIELDPRQKAYLWQ 120

Query: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180
           RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR
Sbjct: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180

Query: 181 PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ 240
           PVMREAYNMFK+GGHPEKLVAAFSSGR NEYFYASLYAGLYHEAEKKVDAAKQ IVAACQ
Sbjct: 181 PVMREAYNMFKNGGHPEKLVAAFSSGRVNEYFYASLYAGLYHEAEKKVDAAKQHIVAACQ 240

Query: 241 STYAQRSDDYMAALAKVHCLCRNWSFS 267
           STY QRSDDYMAALAKVHCL RNWSFS
Sbjct: 241 STYGQRSDDYMAALAKVHCLRRNWSFS 267

[Close]

BLAST of CsGy2G004560 vs. ExPASy TrEMBL
Match: A0A6J1KHI1 (uncharacterized protein LOC111493913 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111493913 PE=4 SV=1)

HSP 1 Score: 487 bits (1254), Expect = 3.64e-173
Identity = 243/265 (91.70%), Postives = 249/265 (93.96%), Query Frame = 0


Query: 1   MATSSSLKSSISVSHSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRL 60
           MA  SSLK SIS+S S H SFTAPS  NSTK +E  HSPSSLPMRI LNHVPPLSLSRRL
Sbjct: 1   MAAISSLKPSISMSRSFHISFTAPSLPNSTKPLENLHSPSSLPMRIKLNHVPPLSLSRRL 60

Query: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQ 120
           FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFR+GDV GSLAEFDKAIELDPRQKAYLWQ
Sbjct: 61  FVPSVSGIWDALTGGNNPRDAVAAIRRGMLLFREGDVSGSLAEFDKAIELDPRQKAYLWQ 120

Query: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPR 180
           RGLSLYYLDRFEEGAEQFRLDVAQNP+DTEESIWCF+CEAQLYGVDEARRRFLEVGRDPR
Sbjct: 121 RGLSLYYLDRFEEGAEQFRLDVAQNPSDTEESIWCFVCEAQLYGVDEARRRFLEVGRDPR 180

Query: 181 PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQ 240
           PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKK+DAAKQ IVAACQ
Sbjct: 181 PVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKLDAAKQHIVAACQ 240

Query: 241 STYAQRSDDYMAALAKVHCLCRNWS 265
           S Y QRSDDYMAALAKVHCLCRNWS
Sbjct: 241 SPYGQRSDDYMAALAKVHCLCRNWS 265

[Close]

BLAST of CsGy2G004560 vs. TAIR 10
Match: AT3G05625.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 356.3 bits (913), Expect = 2.2e-98
Identity = 170/216 (78.70%), Postives = 193/216 (89.35%), Query Frame = 0


Query: 52  PPLSLSRRLFVPSVSGIWDALTGG--NNPRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIE 111
           PP +LSRRLF+PSVS IWDA+TGG  +NPR+A+AA+RRGM LFRQGDV GS+AEFD+AI 
Sbjct: 38  PPHALSRRLFLPSVSSIWDAITGGGDSNPREAIAAVRRGMQLFRQGDVAGSVAEFDRAII 97

Query: 112 LDPRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEAR 171
           LDPRQKAYLWQRGLSLYY+DRFEEGAEQFR+DVAQNPNDTEESIWCF+CEA+L+GVD AR
Sbjct: 98  LDPRQKAYLWQRGLSLYYVDRFEEGAEQFRIDVAQNPNDTEESIWCFICEARLHGVDVAR 157

Query: 172 RRFLEVGRDPRPVMREAYNMFKDGGHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVD 231
            +FLEVGRD RPVMREAYN+FK+GG PEKLV  FSSG+ +EYFYASLYAGLY+EAE K +
Sbjct: 158 TQFLEVGRDSRPVMREAYNLFKNGGDPEKLVNDFSSGQASEYFYASLYAGLYYEAEGKSE 217

Query: 232 AAKQDIVAACQSTYAQRSDDYMAALAKVHCLCRNWS 266
            AK  + AAC S Y QRSDDYMA+LAKVHCLCRNWS
Sbjct: 218 NAKFHLTAACGSPYGQRSDDYMASLAKVHCLCRNWS 253

The following BLAST results are available for this feature:

BLAST of CsGy2G004560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1C3L9	1.0e-04	30.67	Lipoprotein NlpI OS=Yersinia pestis bv. Antiqua (strain Antiqua) OX=360102 GN=nl...	[more]
Q7CKI5	1.0e-04	30.67	Lipoprotein NlpI OS=Yersinia pestis OX=632 GN=nlpI PE=3 SV=1	[more]
Q1CM50	1.0e-04	30.67	Lipoprotein NlpI OS=Yersinia pestis bv. Antiqua (strain Nepal516) OX=377628 GN=n...	[more]

BLAST of CsGy2G004560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144772.1	7.14e-192	100.00	uncharacterized protein LOC101209381 [Cucumis sativus] >KGN60968.1 hypothetical ...	[more]
TYJ96494.1	8.53e-182	95.13	uncharacterized protein E5676_scaffold546G001400 [Cucumis melo var. makuwa]	[more]
XP_008453971.1	1.65e-179	94.38	PREDICTED: uncharacterized protein LOC103494530 [Cucumis melo] >KAA0048042.1 unc...	[more]
XP_038889663.1	4.56e-179	93.26	uncharacterized protein LOC120079523 [Benincasa hispida]	[more]
XP_022999589.1	7.52e-173	91.70	uncharacterized protein LOC111493913 isoform X3 [Cucurbita maxima]	[more]

BLAST of CsGy2G004560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGH0	3.45e-192	100.00	TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G032740 ...	[more]
A0A5D3BC02	4.13e-182	95.13	TPR_REGION domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7TX07	7.99e-180	94.38	TPR_REGION domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BXM7	7.99e-180	94.38	uncharacterized protein LOC103494530 OS=Cucumis melo OX=3656 GN=LOC103494530 PE=...	[more]
A0A6J1KHI1	3.64e-173	91.70	uncharacterized protein LOC111493913 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CsGy2G004560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05625.1	2.2e-98	78.70	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 75..260 e-value: 1.2E-22 score: 82.8
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 77..234
None	No IPR available	PANTHER	PTHR47908	FAMILY NOT NAMED	coord: 1..266
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 81..114 score: 9.5289

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G004560.2	CsGy2G004560.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016740	transferase activity