CsGy2G003642 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G003642
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	TMV resistance protein N-like
Location	Gy14Chr2: 2482295 .. 2482723 (-)
RNA-Seq Expression	CsGy2G003642
Synteny	CsGy2G003642

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAGTGGGATTCCGGAATGGTTGAGCTATGAGACTGCATCAAATTCAATAAGGGCCAGTTTTCAACACAATCGCAATAGAAAGATAACTTTGGCTACATCCGTTACTTTCCGAGTGGATATTGGAGATTCATATCAAGGAATGGCCTTAGTTTCATGTAACATATTCATCGGTTGTAGACTCGAAAGTTTTCATATGAGAAAATTTCCAACATCAACATTAGAATATACATGGTTAGTAGAAGCTATTTCTACAAGACAAAGTGAGTCCTTGGAAGAGAATGATTGGAATGATGTTATAGTCTTGTTTGAGGCTGTGAAATGGCTACTATTGCCTACTATAATTTTCACTTTATTTATAAACTTTATTGCCTACTATAATTTTCCAAAATTTATTTATATTAAAGTACAAACCTTTAATATATAG

mRNA sequence

ATGAATAGTGGGATTCCGGAATGGTTGAGCTATGAGACTGCATCAAATTCAATAAGGGCCAGTTTTCAACACAATCGCAATAGAAAGATAACTTTGGCTACATCCGTTACTTTCCGAGTGGATATTGGAGATTCATATCAAGGAATGGCCTTAGTTTCATGTAACATATTCATCGGTTGTAGACTCGAAAGTTTTCATATGAGAAAATTTCCAACATCAACATTAGAATATACATGGTTAGTAGAAGCTATTTCTACAAGACAAAGTGAGTCCTTGGAAGAGAATGATTGGAATGATGTTATAGTCTTGTTTGAGGCTGTGAAATGGCTACTATTGCCTACTATAATTTTCACTTTATTTATAAACTTTATTGCCTACTATAATTTTCCAAAATTTATTTATATTAAAGTACAAACCTTTAATATATAG

Coding sequence (CDS)

ATGAATAGTGGGATTCCGGAATGGTTGAGCTATGAGACTGCATCAAATTCAATAAGGGCCAGTTTTCAACACAATCGCAATAGAAAGATAACTTTGGCTACATCCGTTACTTTCCGAGTGGATATTGGAGATTCATATCAAGGAATGGCCTTAGTTTCATGTAACATATTCATCGGTTGTAGACTCGAAAGTTTTCATATGAGAAAATTTCCAACATCAACATTAGAATATACATGGTTAGTAGAAGCTATTTCTACAAGACAAAGTGAGTCCTTGGAAGAGAATGATTGGAATGATGTTATAGTCTTGTTTGAGGCTGTGAAATGGCTACTATTGCCTACTATAATTTTCACTTTATTTATAAACTTTATTGCCTACTATAATTTTCCAAAATTTATTTATATTAAAGTACAAACCTTTAATATATAG

Protein sequence

MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNIFIGCRLESFHMRKFPTSTLEYTWLVEAISTRQSESLEENDWNDVIVLFEAVKWLLLPTIIFTLFINFIAYYNFPKFIYIKVQTFNI*

Homology

[Close]

BLAST of CsGy2G003642 vs. NCBI nr
Match: KGN60863.1 (hypothetical protein Csa_023476 [Cucumis sativus])

HSP 1 Score: 282 bits (722), Expect = 7.64e-96
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNIFIGC 60
           MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCN+FIGC
Sbjct: 1   MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60

Query: 61  RLESFHMRKFPTSTLEYTWLVEAISTRQSESLEENDWNDVIVLFEAVKWLLLPTIIFTLF 120
           RLES HMRKFPTSTLEYTWLVEA STRQSESLEENDWNDVIVLFEAVKWLLLPTIIFTLF
Sbjct: 61  RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVLFEAVKWLLLPTIIFTLF 120

Query: 121 INFIAYYNFPKFIYIKVQTFNI 142
           INFIAYYNFPKFIYIKVQTFNI
Sbjct: 121 INFIAYYNFPKFIYIKVQTFNI 142

[Close]

BLAST of CsGy2G003642 vs. NCBI nr
Match: KAA0047942.1 (TMV resistance protein N-like [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (404), Expect = 3.03e-42
Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 1    MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNIFIGC 60
            MN+GIPEW SY+ ASN+I  +FQHNR+ KITLATSVTFRVD GDS QGMALVSCNI IGC
Sbjct: 1051 MNNGIPEWFSYQIASNAIMVTFQHNRDTKITLATSVTFRVD-GDSDQGMALVSCNILIGC 1110

Query: 61   RLESFHMRKFPTSTLEYTWLVEAISTRQSESLEENDWNDVIVLFEAVK 108
            RL+  +MRKFP S  EYTWLVE   T +  SLE NDWNDVIV FEAVK
Sbjct: 1111 RLDRRYMRKFPKSASEYTWLVETSETYRGSSLEMNDWNDVIVWFEAVK 1157

[Close]

BLAST of CsGy2G003642 vs. NCBI nr
Match: XP_038877735.1 (disease resistance protein RPS6-like, partial [Benincasa hispida])

HSP 1 Score: 147 bits (372), Expect = 6.21e-38
Identity = 75/108 (69.44%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 1    MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNIFIGC 60
            MN  IP+W SY+T SNSIR SFQH+ N + TLAT VTF+V +GDSYQGMALVSCNIFIGC
Sbjct: 1004 MNIRIPKWFSYQTISNSIRVSFQHDLNIERTLATYVTFQV-VGDSYQGMALVSCNIFIGC 1063

Query: 61   RLESFHMRKFPTSTLEYTWLVEAISTRQSESLEENDWNDVIVLFEAVK 108
            RL+S  MRKFP+ST EYTWLV   S   S SLE N+WN VIV FE VK
Sbjct: 1064 RLQSCFMRKFPSSTSEYTWLVTTSSPTFSTSLEMNEWNHVIVWFEVVK 1110

[Close]

BLAST of CsGy2G003642 vs. NCBI nr
Match: XP_022946583.1 (TMV resistance protein N-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 136 bits (343), Expect = 4.97e-34
Identity = 70/108 (64.81%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 1    MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNIFIGC 60
            MN  IPEW S++T SNSI+ SF+H+ N + TLATS  FRVD GDSY+G AL+SCNIFIG 
Sbjct: 956  MNIEIPEWFSHQTISNSIKVSFRHDHNIERTLATSAKFRVD-GDSYEGEALISCNIFIGY 1015

Query: 61   RLESFHMRKFPTSTLEYTWLVEAISTRQSESLEENDWNDVIVLFEAVK 108
            RL+S  MRKF  ST EYTWLV   S   S SL  NDWNDVIV FE VK
Sbjct: 1016 RLQSSFMRKFAPSTSEYTWLVTTSSPTFSSSLVANDWNDVIVWFEVVK 1062

[Close]

BLAST of CsGy2G003642 vs. NCBI nr
Match: XP_022946582.1 (TMV resistance protein N-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 136 bits (343), Expect = 4.98e-34
Identity = 70/108 (64.81%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 1    MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNIFIGC 60
            MN  IPEW S++T SNSI+ SF+H+ N + TLATS  FRVD GDSY+G AL+SCNIFIG 
Sbjct: 969  MNIEIPEWFSHQTISNSIKVSFRHDHNIERTLATSAKFRVD-GDSYEGEALISCNIFIGY 1028

Query: 61   RLESFHMRKFPTSTLEYTWLVEAISTRQSESLEENDWNDVIVLFEAVK 108
            RL+S  MRKF  ST EYTWLV   S   S SL  NDWNDVIV FE VK
Sbjct: 1029 RLQSSFMRKFAPSTSEYTWLVTTSSPTFSSSLVANDWNDVIVWFEVVK 1075

[Close]

BLAST of CsGy2G003642 vs. ExPASy TrEMBL
Match: A0A0A0LGA3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020860 PE=4 SV=1)

HSP 1 Score: 282 bits (722), Expect = 3.70e-96
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNIFIGC 60
           MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCN+FIGC
Sbjct: 1   MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60

Query: 61  RLESFHMRKFPTSTLEYTWLVEAISTRQSESLEENDWNDVIVLFEAVKWLLLPTIIFTLF 120
           RLES HMRKFPTSTLEYTWLVEA STRQSESLEENDWNDVIVLFEAVKWLLLPTIIFTLF
Sbjct: 61  RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVLFEAVKWLLLPTIIFTLF 120

Query: 121 INFIAYYNFPKFIYIKVQTFNI 142
           INFIAYYNFPKFIYIKVQTFNI
Sbjct: 121 INFIAYYNFPKFIYIKVQTFNI 142

[Close]

BLAST of CsGy2G003642 vs. ExPASy TrEMBL
Match: A0A5A7TWR2 (TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00010 PE=4 SV=1)

HSP 1 Score: 160 bits (404), Expect = 1.47e-42
Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 1    MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNIFIGC 60
            MN+GIPEW SY+ ASN+I  +FQHNR+ KITLATSVTFRVD GDS QGMALVSCNI IGC
Sbjct: 1051 MNNGIPEWFSYQIASNAIMVTFQHNRDTKITLATSVTFRVD-GDSDQGMALVSCNILIGC 1110

Query: 61   RLESFHMRKFPTSTLEYTWLVEAISTRQSESLEENDWNDVIVLFEAVK 108
            RL+  +MRKFP S  EYTWLVE   T +  SLE NDWNDVIV FEAVK
Sbjct: 1111 RLDRRYMRKFPKSASEYTWLVETSETYRGSSLEMNDWNDVIVWFEAVK 1157

[Close]

BLAST of CsGy2G003642 vs. ExPASy TrEMBL
Match: A0A0A0LLP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021720 PE=4 SV=1)

HSP 1 Score: 141 bits (356), Expect = 2.22e-39
Identity = 69/96 (71.88%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1   MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNIFIGC 60
           MNSGIPEWLSY+T S+SIR SFQHNRN + TLATSVTFRVD GDSYQGMALVSCNIFIGC
Sbjct: 33  MNSGIPEWLSYQTTSDSIRVSFQHNRNTERTLATSVTFRVD-GDSYQGMALVSCNIFIGC 92

Query: 61  RLESFHMRKFPTSTLEYTWLVEAISTRQSESLEEND 96
           RL+S +MRKFPTST EYTW    + +   E   ++D
Sbjct: 93  RLKSCYMRKFPTSTSEYTWYKNLVKSFAQEVSAKSD 127

[Close]

BLAST of CsGy2G003642 vs. ExPASy TrEMBL
Match: A0A6J1G4A0 (TMV resistance protein N-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111450603 PE=4 SV=1)

HSP 1 Score: 136 bits (343), Expect = 2.41e-34
Identity = 70/108 (64.81%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 1    MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNIFIGC 60
            MN  IPEW S++T SNSI+ SF+H+ N + TLATS  FRVD GDSY+G AL+SCNIFIG 
Sbjct: 956  MNIEIPEWFSHQTISNSIKVSFRHDHNIERTLATSAKFRVD-GDSYEGEALISCNIFIGY 1015

Query: 61   RLESFHMRKFPTSTLEYTWLVEAISTRQSESLEENDWNDVIVLFEAVK 108
            RL+S  MRKF  ST EYTWLV   S   S SL  NDWNDVIV FE VK
Sbjct: 1016 RLQSSFMRKFAPSTSEYTWLVTTSSPTFSSSLVANDWNDVIVWFEVVK 1062

[Close]

BLAST of CsGy2G003642 vs. ExPASy TrEMBL
Match: A0A6J1G440 (TMV resistance protein N-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111450603 PE=4 SV=1)

HSP 1 Score: 136 bits (343), Expect = 2.41e-34
Identity = 70/108 (64.81%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 1    MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNIFIGC 60
            MN  IPEW S++T SNSI+ SF+H+ N + TLATS  FRVD GDSY+G AL+SCNIFIG 
Sbjct: 969  MNIEIPEWFSHQTISNSIKVSFRHDHNIERTLATSAKFRVD-GDSYEGEALISCNIFIGY 1028

Query: 61   RLESFHMRKFPTSTLEYTWLVEAISTRQSESLEENDWNDVIVLFEAVK 108
            RL+S  MRKF  ST EYTWLV   S   S SL  NDWNDVIV FE VK
Sbjct: 1029 RLQSSFMRKFAPSTSEYTWLVTTSSPTFSSSLVANDWNDVIVWFEVVK 1075

The following BLAST results are available for this feature:

BLAST of CsGy2G003642 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G003642 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60863.1	7.64e-96	97.89	hypothetical protein Csa_023476 [Cucumis sativus]	[more]
KAA0047942.1	3.03e-42	73.15	TMV resistance protein N-like [Cucumis melo var. makuwa]	[more]
XP_038877735.1	6.21e-38	69.44	disease resistance protein RPS6-like, partial [Benincasa hispida]	[more]
XP_022946583.1	4.97e-34	64.81	TMV resistance protein N-like isoform X3 [Cucurbita moschata]	[more]
XP_022946582.1	4.98e-34	64.81	TMV resistance protein N-like isoform X2 [Cucurbita moschata]	[more]

BLAST of CsGy2G003642 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGA3	3.70e-96	97.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020860 PE=4 SV=1	[more]
A0A5A7TWR2	1.47e-42	73.15	TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A0A0LLP7	2.22e-39	71.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021720 PE=4 SV=1	[more]
A0A6J1G4A0	2.41e-34	64.81	TMV resistance protein N-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1G440	2.41e-34	64.81	TMV resistance protein N-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of CsGy2G003642 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G003642.1	CsGy2G003642.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0007165	signal transduction
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003953	NAD+ nucleosidase activity