CsGy2G002900 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G002900
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Alba domain-containing protein
Location	Gy14Chr2: 1919802 .. 1921236 (-)
RNA-Seq Expression	CsGy2G002900
Synteny	CsGy2G002900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCATTTTTCCCGCTCCTTCCAATTTTCCCCCATAATATTCCTCAACAATCCAATCTCTTCCCTCTCTTTCTTTCTTTCCATCTGCTTTCCAGATACACACACACACCCAATTTTGTTTTACTCACTGAGAAAGTGGAAAATTTAGCAATGGCCGCGACGATTGCTGTCTCGGGAGCCACACCCGCCACTGAAACACAAAAGAAGAACAGAATTCAGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTACGTTAATCTTGCTAAGGTATATATACGTAAATCCCTTCTTTCACTTCTTTCCGTTTCTTTGATTATTCGTTTGTTATATATATATCTCAGAAAGAGATTATTATTACACCCATTTCGTTATTGTTATGTTCTTCTTCTTAGAAAATGGAATCCGAAATTAGTAATGTATGAAGGATTTATCAATAATCCGTGTTGTTCTTTTGATTTGATTTATGATTTGAGTAATTGTACTATCTGGGCAATTGTTTGATTTCAGTTTCTTTGTTGTTTTGGTTTGTTTTTTTTTATTGGGAATTCTAAATCGATGTTTGCCCTAAATTCAGAGGTATATTCAACAGCATAATGAAGTTGAGCTTTCTGCCTTGGGAATGGGTATTGTTTCATTTCTTTTGGTTCTTTTAATTTATGGGTATATATCTGATGAATTTTTGGCTTTCTTGGCTCAAATTCTTCATTGTAATATGACAGCAATCACTACTGTTGTCACAATTGCGGAGATTCTTAAGAACAATGGGCTGGCTACAGAAAAGAGTATAATCCATGATCTTTAATGTTAATCTCTCTTGATAAAAATGGTGATTGTCTTTTACTGATAATCTTTGTGGTTTTGTTATGAAACAGAAGTTTTGACTTCTACAGTCGGCATGAAAGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCTAAGGTTTGTTCAATTAGTTATGAATGTTGAGATATTGTTCTTGTAGGATGGGTTGATTTTGGATGATTATCTGCTTCTCAGTTCTTATAAAATGGTTTTAATCCTCTGGAAATCAGTCTCCAACATTCTTTTTTTTTTTGTGTGTCTTAAAATAGCTAGATTGAGATATTGAGAGGGCTGTTTTTGGTTTATTTTGTGACAGATTGAGATTGTTCTGGGGAAGTCTGAGAAGTTTGATTCTCTGATGACTGCGGCCACGGCAGTACCGGAGACAGTGGTGGCAGTTGCAGCAGCTGCTGAGGAAGAGAAGAAAGCAGAGGAAAGCAAGGAGGAGCAGTAGGGGGAAAGAGAGAAAGGAATGTGATGTTACATTGTTGTAGTTTAAGAATCACATTTGCAATATTATAGGATAGGCTATTTTCATTTGAAATTCCTCTACTAGTTTTTTGCCTCTTTCTGAACAGTCACAGTTATGAATGAGATGTCATGCCTGCCATCAACC

mRNA sequence

ATTCATTTTTCCCGCTCCTTCCAATTTTCCCCCATAATATTCCTCAACAATCCAATCTCTTCCCTCTCTTTCTTTCTTTCCATCTGCTTTCCAGATACACACACACACCCAATTTTGTTTTACTCACTGAGAAAGTGGAAAATTTAGCAATGGCCGCGACGATTGCTGTCTCGGGAGCCACACCCGCCACTGAAACACAAAAGAAGAACAGAATTCAGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTACGTTAATCTTGCTAAGAGGTATATTCAACAGCATAATGAAGTTGAGCTTTCTGCCTTGGGAATGGCAATCACTACTGTTGTCACAATTGCGGAGATTCTTAAGAACAATGGGCTGGCTACAGAAAAGAAAGTTTTGACTTCTACAGTCGGCATGAAAGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCTAAGATTGAGATTGTTCTGGGGAAGTCTGAGAAGTTTGATTCTCTGATGACTGCGGCCACGGCAGTACCGGAGACAGTGGTGGCAGTTGCAGCAGCTGCTGAGGAAGAGAAGAAAGCAGAGGAAAGCAAGGAGGAGCAGTAGGGGGAAAGAGAGAAAGGAATGTGATGTTACATTGTTGTAGTTTAAGAATCACATTTGCAATATTATAGGATAGGCTATTTTCATTTGAAATTCCTCTACTAGTTTTTTGCCTCTTTCTGAACAGTCACAGTTATGAATGAGATGTCATGCCTGCCATCAACC

Coding sequence (CDS)

ATGGCCGCGACGATTGCTGTCTCGGGAGCCACACCCGCCACTGAAACACAAAAGAAGAACAGAATTCAGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTACGTTAATCTTGCTAAGAGGTATATTCAACAGCATAATGAAGTTGAGCTTTCTGCCTTGGGAATGGCAATCACTACTGTTGTCACAATTGCGGAGATTCTTAAGAACAATGGGCTGGCTACAGAAAAGAAAGTTTTGACTTCTACAGTCGGCATGAAAGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCTAAGATTGAGATTGTTCTGGGGAAGTCTGAGAAGTTTGATTCTCTGATGACTGCGGCCACGGCAGTACCGGAGACAGTGGTGGCAGTTGCAGCAGCTGCTGAGGAAGAGAAGAAAGCAGAGGAAAGCAAGGAGGAGCAGTAG

Protein sequence

MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPETVVAVAAAAEEEKKAEESKEEQ*

Homology

[Close]

BLAST of CsGy2G002900 vs. ExPASy Swiss-Prot
Match: O22969 (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.5e-37
Identity = 86/122 (70.49%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 4   TIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 63
           T  V+    AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+
Sbjct: 5   TDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTV 64

Query: 64  AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPETV 123
            EILKNNG A EKK++TSTV +KD+ +GR VQKAKIEI L KSEKFD LM AA    E  
Sbjct: 65  TEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDA 124

Query: 124 VA 126
            A
Sbjct: 125 EA 126

[Close]

BLAST of CsGy2G002900 vs. NCBI nr
Match: XP_004139384.1 (uncharacterized protein At2g34160 [Cucumis sativus])

HSP 1 Score: 255 bits (651), Expect = 5.54e-85
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60
           MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV
Sbjct: 1   MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60

Query: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVP 120
           VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVP
Sbjct: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVP 120

Query: 121 ETVVAVAAAAEEEKKAEESKEEQ 143
           ETVVAVAAAAEEEKKAEESKEEQ
Sbjct: 121 ETVVAVAAAAEEEKKAEESKEEQ 143

[Close]

BLAST of CsGy2G002900 vs. NCBI nr
Match: XP_008456222.1 (PREDICTED: uncharacterized protein At2g34160 [Cucumis melo] >KAA0063590.1 alba DNA/RNA-binding protein [Cucumis melo var. makuwa] >TYK18437.1 alba DNA/RNA-binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 249 bits (636), Expect = 1.04e-82
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 3   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 62
           ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT
Sbjct: 2   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 61

Query: 63  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 122
           IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET
Sbjct: 62  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 121

Query: 123 VVAVAAAAEEEKKAEESKEEQ 143
           VVAVAAA EEEKKAEE+KEEQ
Sbjct: 122 VVAVAAAGEEEKKAEENKEEQ 142

[Close]

BLAST of CsGy2G002900 vs. NCBI nr
Match: XP_038877259.1 (uncharacterized protein At2g34160-like [Benincasa hispida])

HSP 1 Score: 228 bits (580), Expect = 3.68e-74
Identity = 133/143 (93.01%), Postives = 135/143 (94.41%), Query Frame = 0


Query: 3   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 62
           ATIAVSGA  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT
Sbjct: 2   ATIAVSGAA-ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 61

Query: 63  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 122
           IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 
Sbjct: 62  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPEV 121

Query: 123 VVAVA---AAAEEEKKAEESKEE 142
           V  VA   AAAEEEKKAEE+KE+
Sbjct: 122 VETVATGAAAAEEEKKAEENKEQ 143

[Close]

BLAST of CsGy2G002900 vs. NCBI nr
Match: XP_022946134.1 (uncharacterized protein At2g34160-like isoform X1 [Cucurbita moschata] >KAG7030319.1 hypothetical protein SDJN02_08666 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 220 bits (561), Expect = 4.76e-71
Identity = 132/157 (84.08%), Postives = 133/157 (84.71%), Query Frame = 0


Query: 3   ATIAVSGATPA---------TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSAL 62
           AT+AVSGAT A         TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSAL
Sbjct: 2   ATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSAL 61

Query: 63  GMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM 122
           GMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM
Sbjct: 62  GMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM 121

Query: 123 TAATAVPETVVAVAAA-------AEEEKKAEESKEEQ 143
           TAAT VPE  VA A A       A EEKK EESKEEQ
Sbjct: 122 TAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ 158

[Close]

BLAST of CsGy2G002900 vs. NCBI nr
Match: XP_022999100.1 (uncharacterized protein At2g34160 isoform X1 [Cucurbita maxima])

HSP 1 Score: 219 bits (557), Expect = 2.28e-70
Identity = 132/162 (81.48%), Postives = 133/162 (82.10%), Query Frame = 0


Query: 3   ATIAVSGATPA---------TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSAL 62
           AT+AVSGAT A         TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSAL
Sbjct: 2   ATMAVSGATAAATPTPVAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSAL 61

Query: 63  GMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM 122
           GMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM
Sbjct: 62  GMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM 121

Query: 123 TAATAVPETVVAVAA------------AAEEEKKAEESKEEQ 143
           TAAT VPE  VA  A            AA EEKK EESKEEQ
Sbjct: 122 TAATVVPEAAVATTAVVAATATVTAAPAAAEEKKEEESKEEQ 163

[Close]

BLAST of CsGy2G002900 vs. ExPASy TrEMBL
Match: A0A0A0LG69 (Alba domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010240 PE=4 SV=1)

HSP 1 Score: 255 bits (651), Expect = 2.68e-85
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60
           MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV
Sbjct: 1   MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60

Query: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVP 120
           VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVP
Sbjct: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVP 120

Query: 121 ETVVAVAAAAEEEKKAEESKEEQ 143
           ETVVAVAAAAEEEKKAEESKEEQ
Sbjct: 121 ETVVAVAAAAEEEKKAEESKEEQ 143

[Close]

BLAST of CsGy2G002900 vs. ExPASy TrEMBL
Match: A0A5D3D4G4 (Alba DNA/RNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001630 PE=4 SV=1)

HSP 1 Score: 249 bits (636), Expect = 5.02e-83
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 3   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 62
           ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT
Sbjct: 2   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 61

Query: 63  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 122
           IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET
Sbjct: 62  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 121

Query: 123 VVAVAAAAEEEKKAEESKEEQ 143
           VVAVAAA EEEKKAEE+KEEQ
Sbjct: 122 VVAVAAAGEEEKKAEENKEEQ 142

[Close]

BLAST of CsGy2G002900 vs. ExPASy TrEMBL
Match: A0A1S3C2U1 (uncharacterized protein At2g34160 OS=Cucumis melo OX=3656 GN=LOC103496224 PE=4 SV=1)

HSP 1 Score: 249 bits (636), Expect = 5.02e-83
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 3   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 62
           ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT
Sbjct: 2   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 61

Query: 63  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 122
           IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET
Sbjct: 62  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 121

Query: 123 VVAVAAAAEEEKKAEESKEEQ 143
           VVAVAAA EEEKKAEE+KEEQ
Sbjct: 122 VVAVAAAGEEEKKAEENKEEQ 142

[Close]

BLAST of CsGy2G002900 vs. ExPASy TrEMBL
Match: A0A6J1G2Y0 (uncharacterized protein At2g34160-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450305 PE=4 SV=1)

HSP 1 Score: 220 bits (561), Expect = 2.30e-71
Identity = 132/157 (84.08%), Postives = 133/157 (84.71%), Query Frame = 0


Query: 3   ATIAVSGATPA---------TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSAL 62
           AT+AVSGAT A         TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSAL
Sbjct: 2   ATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSAL 61

Query: 63  GMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM 122
           GMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM
Sbjct: 62  GMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM 121

Query: 123 TAATAVPETVVAVAAA-------AEEEKKAEESKEEQ 143
           TAAT VPE  VA A A       A EEKK EESKEEQ
Sbjct: 122 TAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ 158

[Close]

BLAST of CsGy2G002900 vs. ExPASy TrEMBL
Match: A0A6J1KEC8 (uncharacterized protein At2g34160 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493582 PE=4 SV=1)

HSP 1 Score: 219 bits (557), Expect = 1.10e-70
Identity = 132/162 (81.48%), Postives = 133/162 (82.10%), Query Frame = 0


Query: 3   ATIAVSGATPA---------TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSAL 62
           AT+AVSGAT A         TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSAL
Sbjct: 2   ATMAVSGATAAATPTPVAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSAL 61

Query: 63  GMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM 122
           GMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM
Sbjct: 62  GMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM 121

Query: 123 TAATAVPETVVAVAA------------AAEEEKKAEESKEEQ 143
           TAAT VPE  VA  A            AA EEKK EESKEEQ
Sbjct: 122 TAATVVPEAAVATTAVVAATATVTAAPAAAEEKKEEESKEEQ 163

[Close]

BLAST of CsGy2G002900 vs. TAIR 10
Match: AT3G04620.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 175.6 bits (444), Expect = 2.8e-44
Identity = 103/138 (74.64%), Postives = 111/138 (80.43%), Query Frame = 0


Query: 6   AVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAE 65
           A +  T   ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+E
Sbjct: 24  ATTTTTATVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISE 83

Query: 66  ILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAAT--AVPETV 125
           ILKNNGLATEKKVLTSTVGMKDE KG++VQKAKIEIVLGKS+KFDSL+   T    PE  
Sbjct: 84  ILKNNGLATEKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLVPPVTNGKTPEE- 143

Query: 126 VAVAAAAEEEKKAEESKE 142
               A+AE E   E  +E
Sbjct: 144 ---EASAETEASVEAQEE 157

[Close]

BLAST of CsGy2G002900 vs. TAIR 10
Match: AT1G29250.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 158.7 bits (400), Expect = 3.5e-39
Identity = 91/139 (65.47%), Postives = 107/139 (76.98%), Query Frame = 0


Query: 4   TIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 63
           T  V+    A +TQKKNRIQVSNTKKPLFFYVNLAKRY+QQ+ +VELSALGMAI TVVT+
Sbjct: 5   TEGVNNMNLAVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIATVVTV 64

Query: 64  AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPETV 123
           AEILKNNG A EKK++TSTV +KD+++GR VQKAKIEI L KSEKFD LM          
Sbjct: 65  AEILKNNGFAVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELM---------- 124

Query: 124 VAVAAAAEEEKKAEESKEE 143
               AAA EEK+A E++E+
Sbjct: 125 ----AAANEEKEAAEAQEQ 129

[Close]

BLAST of CsGy2G002900 vs. TAIR 10
Match: AT2G34160.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 157.1 bits (396), Expect = 1.0e-38
Identity = 86/122 (70.49%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 4   TIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 63
           T  V+    AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+
Sbjct: 5   TDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTV 64

Query: 64  AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPETV 123
            EILKNNG A EKK++TSTV +KD+ +GR VQKAKIEI L KSEKFD LM AA    E  
Sbjct: 65  TEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDA 124

Query: 124 VA 126
            A
Sbjct: 125 EA 126

The following BLAST results are available for this feature:

BLAST of CsGy2G002900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22969	1.5e-37	70.49	Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 P...	[more]

BLAST of CsGy2G002900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139384.1	5.54e-85	100.00	uncharacterized protein At2g34160 [Cucumis sativus]	[more]
XP_008456222.1	1.04e-82	98.58	PREDICTED: uncharacterized protein At2g34160 [Cucumis melo] >KAA0063590.1 alba D...	[more]
XP_038877259.1	3.68e-74	93.01	uncharacterized protein At2g34160-like [Benincasa hispida]	[more]
XP_022946134.1	4.76e-71	84.08	uncharacterized protein At2g34160-like isoform X1 [Cucurbita moschata] >KAG70303...	[more]
XP_022999100.1	2.28e-70	81.48	uncharacterized protein At2g34160 isoform X1 [Cucurbita maxima]	[more]

BLAST of CsGy2G002900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG69	2.68e-85	100.00	Alba domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010240 PE=4 S...	[more]
A0A5D3D4G4	5.02e-83	98.58	Alba DNA/RNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C2U1	5.02e-83	98.58	uncharacterized protein At2g34160 OS=Cucumis melo OX=3656 GN=LOC103496224 PE=4 S...	[more]
A0A6J1G2Y0	2.30e-71	84.08	uncharacterized protein At2g34160-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1KEC8	1.10e-70	81.48	uncharacterized protein At2g34160 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of CsGy2G002900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04620.1	2.8e-44	74.64	Alba DNA/RNA-binding protein	[more]
AT1G29250.1	3.5e-39	65.47	Alba DNA/RNA-binding protein	[more]
AT2G34160.1	1.0e-38	70.49	Alba DNA/RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PIRSF	PIRSF030333	UCP030333_Alba	coord: 1..142 e-value: 9.9E-62 score: 205.3
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PANTHER	PTHR31947	DNA/RNA-BINDING PROTEIN ALBA 3	coord: 11..140
IPR036882	Alba-like domain superfamily	GENE3D	3.30.110.20		coord: 18..143 e-value: 4.5E-51 score: 173.6
IPR036882	Alba-like domain superfamily	SUPERFAMILY	82704	AlbA-like	coord: 19..114
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 20..82 e-value: 3.0E-13 score: 49.4
None	No IPR available	PANTHER	PTHR31947:SF19	ALBA DNA/RNA-BINDING PROTEIN	coord: 11..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G002900.2	CsGy2G002900.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048235	pollen sperm cell differentiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding