CsGy2G002820 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy2G002820
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPhosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1
LocationGy14Chr2: 1884916 .. 1885444 (-)
RNA-Seq ExpressionCsGy2G002820
SyntenyCsGy2G002820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATAGTTTTTTCTCTCTCACAAATGGCTTTCTCTCTTATGAAAACGGTTGCTTTTCTTTTCATTTTTCTTTCTATTGTCGACATGTCGGCCGCAAGGGTCTTGAATGGAGAGCGGTGGCTTCCAGGGTCAATGGTTCCCTTCGCGATGCTACGAGGTCCCGTGCCTAGTTCAAGCAGGAACCCGTGTTCCTTTATTCCGGGGTTTAGTCGAGGCCGGTGTACGTTGAGCGAGGTGGACGAGGGTGATGCCAGTGTTCGTGGTGGCTCCTCCGCGTTCCCGGGGTTGAATGCTGATGGATTTGCAGCGGCTTCTGTGGTTAATCAAACGCAGAAGCAAGATTCTTCTATGAGCTCTTGAATGATATATTATGAAGTTTGTGTATAGTTTTCTTGTTTTTTATTTTCATATATTTAATTTATTTGAGAATTGATAATGTAATTGGATTGGCCAAAATTTTCCATTCTTTTGTTTTTTGAATTACAAACGAAAATTGTTGAATATGAAATGATGTTGAGTTTCAAAAAAAC

mRNA sequence

CAATAGTTTTTTCTCTCTCACAAATGGCTTTCTCTCTTATGAAAACGGTTGCTTTTCTTTTCATTTTTCTTTCTATTGTCGACATGTCGGCCGCAAGGGTCTTGAATGGAGAGCGGTGGCTTCCAGGGTCAATGGTTCCCTTCGCGATGCTACGAGGTCCCGTGCCTAGTTCAAGCAGGAACCCGTGTTCCTTTATTCCGGGGTTTAGTCGAGGCCGGTGTACGTTGAGCGAGGTGGACGAGGGTGATGCCAGTGTTCGTGGTGGCTCCTCCGCGTTCCCGGGGTTGAATGCTGATGGATTTGCAGCGGCTTCTGTGGTTAATCAAACGCAGAAGCAAGATTCTTCTATGAGCTCTTGAATGATATATTATGAAGTTTGTGTATAGTTTTCTTGTTTTTTATTTTCATATATTTAATTTATTTGAGAATTGATAATGTAATTGGATTGGCCAAAATTTTCCATTCTTTTGTTTTTTGAATTACAAACGAAAATTGTTGAATATGAAATGATGTTGAGTTTCAAAAAAAC

Coding sequence (CDS)

ATGGCTTTCTCTCTTATGAAAACGGTTGCTTTTCTTTTCATTTTTCTTTCTATTGTCGACATGTCGGCCGCAAGGGTCTTGAATGGAGAGCGGTGGCTTCCAGGGTCAATGGTTCCCTTCGCGATGCTACGAGGTCCCGTGCCTAGTTCAAGCAGGAACCCGTGTTCCTTTATTCCGGGGTTTAGTCGAGGCCGGTGTACGTTGAGCGAGGTGGACGAGGGTGATGCCAGTGTTCGTGGTGGCTCCTCCGCGTTCCCGGGGTTGAATGCTGATGGATTTGCAGCGGCTTCTGTGGTTAATCAAACGCAGAAGCAAGATTCTTCTATGAGCTCTTGA

Protein sequence

MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS*
Homology
BLAST of CsGy2G002820 vs. NCBI nr
Match: KGN60782.1 (hypothetical protein Csa_019261 [Cucumis sativus])

HSP 1 Score: 214 bits (544), Expect = 1.08e-69
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0

Query: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60
           MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111
           FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS
Sbjct: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

BLAST of CsGy2G002820 vs. NCBI nr
Match: KAA0063581.1 (hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ97908.1 hypothetical protein E5676_scaffold285G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (437), Expect = 1.86e-53
Identity = 92/111 (82.88%), Postives = 98/111 (88.29%), Query Frame = 0

Query: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60
           MAFSL+KTVAFLFIFLSI D+S        RWLPGS VP A+LRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLVKTVAFLFIFLSIFDVSVG------RWLPGSRVPIAVLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111
           FSRGRCTLSEVD+G ASV GGSSAFPGLNADGFAAAS+VNQTQKQDSS+SS
Sbjct: 61  FSRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 105

BLAST of CsGy2G002820 vs. NCBI nr
Match: KAG6599331.1 (hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141 bits (356), Expect = 2.69e-41
Identity = 69/89 (77.53%), Postives = 76/89 (85.39%), Query Frame = 0

Query: 21  MSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGDASVRG 80
           MSAARV+ GERWLP   VP AMLRG VPSSSRNPCSFIPGFSRGRCTLSE D+G A+V G
Sbjct: 1   MSAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPGFSRGRCTLSEADDGAAAVHG 60

Query: 81  GSSAFPGLNADGFAAASVVNQTQKQDSSM 109
           GSSA  GLNADGFAAAS+ N+TQK+D S+
Sbjct: 61  GSSALSGLNADGFAAASMANKTQKKDPSL 89

BLAST of CsGy2G002820 vs. NCBI nr
Match: KAG6586324.1 (hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124 bits (310), Expect = 5.10e-34
Identity = 72/113 (63.72%), Postives = 82/113 (72.57%), Query Frame = 0

Query: 1   MAFSLMKT--VAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFI 60
           M FS+MKT   AF+FI L I  +SAARVL GERW P   V   MLRG VP S RNPCSFI
Sbjct: 1   MPFSVMKTPAAAFVFILLCIFHVSAARVLTGERWRP---VSDRMLRGLVPPSGRNPCSFI 60

Query: 61  PGFSRGRCTLSEVDE--GDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSM 109
           PG  RGRCTLSEV++  G     GGSSAFPG+N DGF+AA++VN TQKQD S+
Sbjct: 61  PGLGRGRCTLSEVEDEAGGGGGGGGSSAFPGMNFDGFSAAAMVNGTQKQDPSL 110

BLAST of CsGy2G002820 vs. NCBI nr
Match: XP_021888699.1 (uncharacterized protein LOC110807772 [Carica papaya])

HSP 1 Score: 81.3 bits (199), Expect = 4.61e-17
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 0

Query: 22  SAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGDASVRGG 81
           +A R+L+ E+WL  +++  ++ RGPVP S  NPC+FIPG +RGRCTLSE+D      R  
Sbjct: 32  AAVRLLDEEQWLAKNLIVQSLQRGPVPPSGGNPCTFIPGRNRGRCTLSEMDVAGQFPRAP 91

Query: 82  SSAFPGLNADGFAAASV----VNQTQKQDSS 108
           ++AFP +  D F A +      N+TQKQDSS
Sbjct: 92  AAAFPDIVVD-FGAVTAGNSGANETQKQDSS 121

BLAST of CsGy2G002820 vs. ExPASy TrEMBL
Match: A0A0A0LJ84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1)

HSP 1 Score: 214 bits (544), Expect = 5.23e-70
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0

Query: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60
           MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111
           FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS
Sbjct: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

BLAST of CsGy2G002820 vs. ExPASy TrEMBL
Match: A0A5A7VCY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001240 PE=4 SV=1)

HSP 1 Score: 172 bits (437), Expect = 9.01e-54
Identity = 92/111 (82.88%), Postives = 98/111 (88.29%), Query Frame = 0

Query: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60
           MAFSL+KTVAFLFIFLSI D+S        RWLPGS VP A+LRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLVKTVAFLFIFLSIFDVSVG------RWLPGSRVPIAVLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111
           FSRGRCTLSEVD+G ASV GGSSAFPGLNADGFAAAS+VNQTQKQDSS+SS
Sbjct: 61  FSRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 105

BLAST of CsGy2G002820 vs. ExPASy TrEMBL
Match: A0A2N9F903 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11524 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.94e-12
Identity = 38/78 (48.72%), Postives = 47/78 (60.26%), Query Frame = 0

Query: 23  AARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGDASVRGGS 82
           A R L+GE WL  ++    + RGPV  S  NPC++IPG S GRCTLSE+D  D  V    
Sbjct: 17  AMRPLDGEPWLNKNLAMQTLQRGPVTPSGPNPCTYIPGRSHGRCTLSEMDVAD-HVAHAP 76

Query: 83  SAFPGLNADGFAAASVVN 100
            AFP  +   FAAAS+ N
Sbjct: 77  PAFPD-HVVSFAAASIAN 92

BLAST of CsGy2G002820 vs. ExPASy TrEMBL
Match: A0A6A4KR04 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_20131 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.43e-12
Identity = 42/91 (46.15%), Postives = 55/91 (60.44%), Query Frame = 0

Query: 23  AARVLNGERWLPG--SMVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGDASVRG 82
           A R L GE WL    ++   ++ RGPV  S  NPC++IPG  RGRCTL+E +E + S R 
Sbjct: 24  ATRPLEGEEWLNNLKTLAIQSLQRGPVTPSGSNPCTYIPGGKRGRCTLAE-NESNYSGRV 83

Query: 83  GSSA---FPGLNADGFAAASVVNQTQKQDSS 108
           G +A   FPG+    FA AS  N ++KQD S
Sbjct: 84  GHAAPPAFPGVMVK-FAPASTANDSRKQDGS 112

BLAST of CsGy2G002820 vs. ExPASy TrEMBL
Match: A0A0B2RDN7 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_008165 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.88e-11
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 16 LSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVD 72
          LS+      R L GE+WL  ++V  ++ RGPV SS RNPCS +PG SRGRCTL E++
Sbjct: 18 LSLEKTRGTRTLEGEQWLHNNLVLHSLQRGPVRSSQRNPCSTVPGRSRGRCTLGEIN 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN60782.11.08e-69100.00hypothetical protein Csa_019261 [Cucumis sativus][more]
KAA0063581.11.86e-5382.88hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ9790... [more]
KAG6599331.12.69e-4177.53hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6586324.15.10e-3463.72hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_021888699.14.61e-1747.25uncharacterized protein LOC110807772 [Carica papaya][more]
Match NameE-valueIdentityDescription
A0A0A0LJ845.23e-70100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1[more]
A0A5A7VCY29.01e-5482.88Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2N9F9037.94e-1248.72Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11524 PE=4 SV=1[more]
A0A6A4KR049.43e-1246.15Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3... [more]
A0A0B2RDN71.88e-1152.63Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_008165 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592:SF6SUBFAMILY NOT NAMEDcoord: 4..107
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 4..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G002820.1CsGy2G002820.1mRNA