CsGy2G002220 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G002220
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Anaphase-promoting complex
Location	Gy14Chr2: 1477680 .. 1480099 (+)
RNA-Seq Expression	CsGy2G002220
Synteny	CsGy2G002220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATAATTAGTAAATAATTGGTGGGGCATTTTGCAAAAATAGTTTCCGAGATTTCTCCGGCGCCAACGAAACCGGCGAAATGCTGAGAAGACAACCCACCATGATCGACGTCGAAATCGAGGATAAGGAAGAACTCGAACAACTCCGTAAACGCCCCGCCGCCGCCTCCACCTACTCCTCTCTCCTCCATAACCTCAGTCGGAATAAAGACCCGGCCTCCAAAGCTCAGCGACTCGGTATTTCCTCTTGAACTTATCCATTTCATATACTTCTCTGATCTCCGATTAGTTGGCCTAGTGAACGGGAACGATAGGGGATTAGTCCGATTCTGATCGTCCGCGTTTGCGGAAAATTCTAGGAAGGCTACAGCAAATTCTGCTTCGATCAGTGAAGCTGCCTTTCTAAAGAGTAAGTGAGCTTTTTGTTAGTATTGTAGGAAGCAATAAGCATACCCTCTTATCATGTTTGAAATCTCTTTGATTATTTCTGATGGACATTAGAATTTTTGTAGAATATACTTGATGAGCTGAAAGGATTTAGTTTTGATATCATCAGATTGTTCTGTACTTTTCATGTAATGACATTAGATAGAAACATAATCATAATTTTCAGGGAGAAGGAAAACTCAAGCAATTATGTCTTACTAACAAAAACTTCTTGTTGGAGGATGAATGAATAATCAAATACCGAACAAAACCCAGATCAAAAAATGTTTAAAGAAATAGCCAAGAAACTAGTTCTTAAGATATTATTCACGTGATACATTTTGGTTATTGGTCATTTCTCATATGATAAAATGGCTACTGACGTTTTGTTCATCAAGTTTCTGAAACTCCTTTTGTGCTGCTTCTTACATGACTACAAGTGTATTTACTATTATTGATAGACTGATTGAAGCCTTTCTGTCTTGGTCTGTGTATGAACTGAGTTGTACTCGAAATTGAGTAAAGCATCACCACTATGTCGAGGGAGTTTTCATTAATACTAATCAAAGACGAAAATCTAAAGTTTGAATTTTCATGGAGATGATAGACACTTATCTATCATGAAGATCAGTAGTCTTCCTTAAAACCGCTACTTATTCTTAAACAAAGAGTGTACGCTTGCCAAGACTGTTTCTGGTTGAGACGTGTTAATGAAATTCATCCCGTGAAACAATGTCCCATTATCACATTAATTTGACAGTGGATCTTTTGGATTCCATTGATGACCTGTAGTTATTTCATTCAACCTTTTTCTTTAAATCGCCTAGAGTCTGTTTCTCATGGGACCAATCCACCCTAATTAAGTTGTGATGTCACAATCACATAATACTTTACTTGGTTCTCAACTTGGCTAAGTTGGGAAATTTTGCAAATCCAAAGTAAGTCACATGGGGAGTCTGTTCATTTCATCCTATCTTAGCAAAAGTGGTTTAAGGTTGGATCACTTCTTATCAAGGTGATTTTTGGAAAATTCAAGCGGAGGCAATTAAAGCATCTTTGGTTTGATGTCTAAAGATAATACCTTTGGAGTAATAACGGAGTGGAATTGTTTATAGGTATCATCTGAAAACGATATCATTGTAGTCTTTCATTAGGGAAATGCTTAGAGTGAGTTTGACCTTCGATTTCATGAGTTGGTGTTATATAACTCAACTTCGATAGTGTTCAGTATTGCAGTTTACACATTCATCAAACAACTTCATCTTTCCCTATTTCTCTCTTTTGAACATTTATAAAGAAACTTCAACTTACAACTCTACACCTCAAACATAAACATTTGAACTCTAACATGTTAACTCCAAGTTTCAAAATTTAACTTAACACCCCTTATATTTTTAGTTAAATTTATAAAATAATAACTAGTTTTTAACCTTCCAAAATTTACCTTGGATTTTTAGAACTAAATGGGTGAAAGACAAACTCGAGTCGTGTCACTTCAAACATTCAGGACAGGACTCCTTTTTGTGCATTGCTCATTTGCCTTTAGATATTGACATATTGTCCTAAGGTTCTTGGCACTTGCGATTGGTTCTTGACTTTGTGTAACAAAATTTATGATACTTTTGCCTCCATTTTTGTGGGACATCCCTTTCACAAGGTGTGAAGAAGATTCTGTGGCTCACTCTGGTTTTCTTCATATTTCTATGGGCGAGAGGAATGGAAAAAGTTTCGGAGACTCTTTCTCTACTCATAATTCACGTGCAGGTGTTTATTTCATTTATCACTGAAATGTTGTTGTATGATTTAGGAAAAGTTTGTAAGCCAATAAGATAAACTACGAATGTGTATGCCAAAGAAATCAGTAGGATCAAGAAGCATGATTTGTAATTGAAATAAAACGTTGTTGTTATATGACTAAGATCTTGAGCAAAATACATTGAGGATTGGATTTAGTATCTCTTTGGTCCCTAAGGTTGGCCACTTTTAGTACTCGAG

mRNA sequence

TAATAATTAGTAAATAATTGGTGGGGCATTTTGCAAAAATAGTTTCCGAGATTTCTCCGGCGCCAACGAAACCGGCGAAATGCTGAGAAGACAACCCACCATGATCGACGTCGAAATCGAGGATAAGGAAGAACTCGAACAACTCCGTAAACGCCCCGCCGCCGCCTCCACCTACTCCTCTCTCCTCCATAACCTCAGTCGGAATAAAGACCCGGCCTCCAAAGCTCAGCGACTCGGTATTTCCTCTTGAACTTATCCATTTCATATACTTCTCTGATCTCCGATTAGTTGGCCTAGTGAACGGGAACGATAGGGGATTAGTCCGATTCTGATCGTCCGCGTTTGCGGAAAATTCTAGGAAGGCTACAGCAAATTCTGCTTCGATCAGTGAAGCTGCCTTTCTAAAGAGTGTGAAGAAGATTCTGTGGCTCACTCTGGTTTTCTTCATATTTCTATGGGCGAGAGGAATGGAAAAAGTTTCGGAGACTCTTTCTCTACTCATAATTCACGTGCAGGTGTTTATTTCATTTATCACTGAAATGTTGTTGTATGATTTAGGAAAAGTTTGTAAGCCAATAAGATAAACTACGAATGTGTATGCCAAAGAAATCAGTAGGATCAAGAAGCATGATTTGTAATTGAAATAAAACGTTGTTGTTATATGACTAAGATCTTGAGCAAAATACATTGAGGATTGGATTTAGTATCTCTTTGGTCCCTAAGGTTGGCCACTTTTAGTACTCGAG

Coding sequence (CDS)

ATGCTGAGAAGACAACCCACCATGATCGACGTCGAAATCGAGGATAAGGAAGAACTCGAACAACTCCGTAAACGCCCCGCCGCCGCCTCCACCTACTCCTCTCTCCTCCATAACCTCAGTCGGAATAAAGACCCGGCCTCCAAAGCTCAGCGACTCGGTATTTCCTCTTGA

Protein sequence

MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLGISS*

Homology

[Close]

BLAST of CsGy2G002220 vs. NCBI nr
Match: KGN60724.1 (hypothetical protein Csa_019232 [Cucumis sativus])

HSP 1 Score: 106 bits (265), Expect = 8.14e-29
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLGISS 56
          MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLGISS
Sbjct: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLGISS 56

[Close]

BLAST of CsGy2G002220 vs. NCBI nr
Match: DAD45067.1 (TPA_asm: hypothetical protein HUJ06_003297 [Nelumbo nucifera])

HSP 1 Score: 67.8 bits (164), Expect = 2.34e-13
Identity = 34/60 (56.67%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 1  MLRRQPTMIDVEIEDKEELEQLRKR----PAAASTYSSLLHNLSRNKDPASKAQRLGISS 56
          MLRR+P+ I+V++EDKEELE+ RKR    PA  +  +S+LH+L+RNKDP++K+QR+G+SS
Sbjct: 1  MLRRKPSKIEVKVEDKEELEEARKRATAGPAPPTGAASILHHLNRNKDPSTKSQRIGLSS 60

[Close]

BLAST of CsGy2G002220 vs. NCBI nr
Match: KAF5185259.1 (hypothetical protein FRX31_025150 [Thalictrum thalictroides])

HSP 1 Score: 64.7 bits (156), Expect = 3.79e-12
Identity = 33/59 (55.93%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYS-----SLLHNLSRNKDPASKAQRLGI 54
          MLRR+P+ I+V++EDKEELE+ RKR AAA+  +     S+LH+L +NKDP++K+QR+GI
Sbjct: 1  MLRRKPSKIEVQLEDKEELEEARKRSAAATNTATTGAASVLHHLDKNKDPSNKSQRIGI 59

[Close]

BLAST of CsGy2G002220 vs. NCBI nr
Match: KAG6586369.1 (Triphosphate tunnel metalloenzyme 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.6 bits (166), Expect = 4.23e-12
Identity = 41/66 (62.12%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAA--------------STYSSLLHNLSRNKDPA 52
          MLRRQP+ I+V+IEDKEELEQ RKR AAA              S  +SLLHNL+RNKDP 
Sbjct: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAAAAAAASTTTDTTSSAAASLLHNLNRNKDPT 60

[Close]

BLAST of CsGy2G002220 vs. NCBI nr
Match: OVA19190.1 (Anaphase-promoting complex [Macleaya cordata])

HSP 1 Score: 62.8 bits (151), Expect = 2.60e-11
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSS----------LLHNLSRNKDPASKAQ 56
          MLRR+P+ I+V+IEDKEELE+ RKR  A+S  ++          L+H L RNKDP++K Q
Sbjct: 1  MLRRKPSKIEVKIEDKEELEEARKRSIASSAATTTTTTTTRAAALIHQLDRNKDPSNKPQ 60

[Close]

BLAST of CsGy2G002220 vs. ExPASy TrEMBL
Match: A0A0A0LI59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008400 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 3.94e-29
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLGISS 56
          MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLGISS
Sbjct: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLGISS 56

[Close]

BLAST of CsGy2G002220 vs. ExPASy TrEMBL
Match: A0A0A0LFB1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008650 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.01e-16
Identity = 44/68 (64.71%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAA------------STYSSLLHNLSRNKDPASK 56
          MLRRQP+ I+V+IEDKEELEQ RKR AAA            S   SLLHN++RNKD ASK
Sbjct: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTTTTDATSAAGSLLHNINRNKDQASK 60

[Close]

BLAST of CsGy2G002220 vs. ExPASy TrEMBL
Match: A0A7J6VJG6 (Uncharacterized protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_025150 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.83e-12
Identity = 33/59 (55.93%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYS-----SLLHNLSRNKDPASKAQRLGI 54
          MLRR+P+ I+V++EDKEELE+ RKR AAA+  +     S+LH+L +NKDP++K+QR+GI
Sbjct: 1  MLRRKPSKIEVQLEDKEELEEARKRSAAATNTATTGAASVLHHLDKNKDPSNKSQRIGI 59

[Close]

BLAST of CsGy2G002220 vs. ExPASy TrEMBL
Match: A0A200R928 (Anaphase-promoting complex OS=Macleaya cordata OX=56857 GN=BVC80_8407g9 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.26e-11
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSS----------LLHNLSRNKDPASKAQ 56
          MLRR+P+ I+V+IEDKEELE+ RKR  A+S  ++          L+H L RNKDP++K Q
Sbjct: 1  MLRRKPSKIEVKIEDKEELEEARKRSIASSAATTTTTTTTRAAALIHQLDRNKDPSNKPQ 60

[Close]

BLAST of CsGy2G002220 vs. ExPASy TrEMBL
Match: A0A371EQJ7 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_52824 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.47e-10
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAASTY----------SSLLHNLSRNKDPASKAQ 56
          MLRR+P+ I+V+IEDKEELE+ R+R A+A+T           S+LL  L R +DP+SKA 
Sbjct: 1  MLRRKPSKIEVKIEDKEELEEARRRNASAATTTTTTTTTTGTSALLRQLDRGEDPSSKAH 60

The following BLAST results are available for this feature:

BLAST of CsGy2G002220 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G002220 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60724.1	8.14e-29	100.00	hypothetical protein Csa_019232 [Cucumis sativus]	[more]
DAD45067.1	2.34e-13	56.67	TPA_asm: hypothetical protein HUJ06_003297 [Nelumbo nucifera]	[more]
KAF5185259.1	3.79e-12	55.93	hypothetical protein FRX31_025150 [Thalictrum thalictroides]	[more]
KAG6586369.1	4.23e-12	62.12	Triphosphate tunnel metalloenzyme 3, partial [Cucurbita argyrosperma subsp. soro...	[more]
OVA19190.1	2.60e-11	51.52	Anaphase-promoting complex [Macleaya cordata]	[more]

BLAST of CsGy2G002220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI59	3.94e-29	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008400 PE=4 SV=1	[more]
A0A0A0LFB1	5.01e-16	64.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008650 PE=4 SV=1	[more]
A0A7J6VJG6	1.83e-12	55.93	Uncharacterized protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_025150 PE=...	[more]
A0A200R928	1.26e-11	51.52	Anaphase-promoting complex OS=Macleaya cordata OX=56857 GN=BVC80_8407g9 PE=4 SV=...	[more]
A0A371EQJ7	1.47e-10	51.52	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_52824 P...	[more]

BLAST of CsGy2G002220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G002220.2	CsGy2G002220.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031145	anaphase-promoting complex-dependent catabolic process
biological_process	GO:0030071	regulation of mitotic metaphase/anaphase transition
cellular_component	GO:0005680	anaphase-promoting complex