CsGy2G002038 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G002038
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	disease resistance protein RGA2-like
Location	Gy14Chr2: 1376769 .. 1377083 (-)
RNA-Seq Expression	CsGy2G002038
Synteny	CsGy2G002038

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAGTTTAAGGCATTTGGAAATTCTATTAATGGGTATTGATTTACCCCCTAAATTTGAAATGCCTCCATATTTGAGCGAATTGGTTCAACTTCAAACGTTGTTTGCTTTTGCAGTAGGATTTGAGACGGGTCGTAAGATTTCTGAACTTAGGGGTCTTAGAAACTTGAAAGGTTTGTTGAAGCTTCATCGTTTAGAACATGTTGAAAGTAAAGAGGAAGCCAAGGCTGCAAAATTGGTGGAAAAAGAGAAGGTAGAAGGACTAAACTTGTCGTGGCGTGGAAAGTGGAAGAATAGTGGAGAATCAGAATGA

mRNA sequence

ATGGTTAGTTTAAGGCATTTGGAAATTCTATTAATGGGTATTGATTTACCCCCTAAATTTGAAATGCCTCCATATTTGAGCGAATTGGTTCAACTTCAAACGTTGTTTGCTTTTGCAGTAGGATTTGAGACGGGTCGTAAGATTTCTGAACTTAGGGGTCTTAGAAACTTGAAAGGTTTGTTGAAGCTTCATCGTTTAGAACATGTTGAAAGTAAAGAGGAAGCCAAGGCTGCAAAATTGGTGGAAAAAGAGAAGGTAGAAGGACTAAACTTGTCGTGGCGTGGAAAGTGGAAGAATAGTGGAGAATCAGAATGA

Coding sequence (CDS)

ATGGTTAGTTTAAGGCATTTGGAAATTCTATTAATGGGTATTGATTTACCCCCTAAATTTGAAATGCCTCCATATTTGAGCGAATTGGTTCAACTTCAAACGTTGTTTGCTTTTGCAGTAGGATTTGAGACGGGTCGTAAGATTTCTGAACTTAGGGGTCTTAGAAACTTGAAAGGTTTGTTGAAGCTTCATCGTTTAGAACATGTTGAAAGTAAAGAGGAAGCCAAGGCTGCAAAATTGGTGGAAAAAGAGAAGGTAGAAGGACTAAACTTGTCGTGGCGTGGAAAGTGGAAGAATAGTGGAGAATCAGAATGA

Protein sequence

MVSLRHLEILLMGIDLPPKFEMPPYLSELVQLQTLFAFAVGFETGRKISELRGLRNLKGLLKLHRLEHVESKEEAKAAKLVEKEKVEGLNLSWRGKWKNSGESE*

Homology

[Close]

BLAST of CsGy2G002038 vs. ExPASy Swiss-Prot
Match: Q7XA40 (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=RGA3 PE=2 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-06
Identity = 36/93 (38.71%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 1   MVSLRHLEILLMGIDLPPKFEMPPYLSELVQLQTLFAFAVGFETGRKISELRGLRNLKGL 60
           + SLR+L      +D  P   MPP +  L  L+TL  F VG   G ++ ELR L NL+G 
Sbjct: 604 LCSLRNLV-----LDHCPLTSMPPRIGLLTCLKTLGYFVVGERKGYQLGELRNL-NLRGA 663

Query: 61  LKLHRLEHVESKEEAKAAKLVEKEKVEGLNLSW 94
           + +  LE V++  EAK A L  K  +  L++SW
Sbjct: 664 ISITHLERVKNDMEAKEANLSAKANLHSLSMSW 690

[Close]

BLAST of CsGy2G002038 vs. ExPASy Swiss-Prot
Match: Q9LRR4 (Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RPPL1 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.1e-05
Identity = 34/94 (36.17%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 1   MVSLRHLEILLMGIDLPPKFEMPPYLSELVQLQTLFAFAVGFETGRKISELRGLRNLKGL 60
           +++LR+L+  L+G  L    +MP     L  LQTL  F V    G +ISEL GL +L G 
Sbjct: 648 LINLRYLD--LIGTKLR---QMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGK 707

Query: 61  LKLHRLEHVESKEEAKAAKLVEKEKVEGLNLSWR 95
           LK+  L+ V    +A  A L  K+ +  ++  WR
Sbjct: 708 LKIVELQRVVDVADAAEANLNSKKHLREIDFVWR 736

[Close]

BLAST of CsGy2G002038 vs. NCBI nr
Match: KAE8651535.1 (hypothetical protein Csa_019319 [Cucumis sativus])

HSP 1 Score: 198 bits (504), Expect = 6.36e-58
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MVSLRHLEILLMGIDLPPKFEMPPYLSELVQLQTLFAFAVGFETGRKISELRGLRNLKGL 60
           MVSLRHLEILLMGIDLPPKFEMPPYLSELVQLQTLFAFAVGFETGRKISEL GLRNLKGL
Sbjct: 529 MVSLRHLEILLMGIDLPPKFEMPPYLSELVQLQTLFAFAVGFETGRKISELGGLRNLKGL 588

Query: 61  LKLHRLEHVESKEEAKAAKLVEKEKVEGLNLSWRGKWKNSGESE 104
           LKLHRLEHVESKEEAKAAKLVEKEKVEGLNLSWRGKWKNSGESE
Sbjct: 589 LKLHRLEHVESKEEAKAAKLVEKEKVEGLNLSWRGKWKNSGESE 632

[Close]

BLAST of CsGy2G002038 vs. NCBI nr
Match: XP_031736677.1 (putative disease resistance protein RGA1 [Cucumis sativus])

HSP 1 Score: 112 bits (280), Expect = 3.17e-26
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1   MVSLRHLEILLMGIDLPPKFEMPPYLSELVQLQTLFAFAVGFETGRKISELRGLRNLK 58
           MVSLRHLEILLMGIDLPPKFEMPPYLSELVQLQTLFAFAVGFETGRKISEL GLRNLK
Sbjct: 422 MVSLRHLEILLMGIDLPPKFEMPPYLSELVQLQTLFAFAVGFETGRKISELGGLRNLK 479

[Close]

BLAST of CsGy2G002038 vs. NCBI nr
Match: XP_011650061.1 (putative disease resistance protein RGA3 [Cucumis sativus] >KGN63368.1 hypothetical protein Csa_022194 [Cucumis sativus])

HSP 1 Score: 102 bits (254), Expect = 1.13e-22
Identity = 62/104 (59.62%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 1   MVSLRHLEILLMGIDLPPKFEMPPYLSELVQLQTLFAFAVGFETGRKISELRGLRNLKGL 60
           M+SLRHLE     ID     +M PYLS+L+QL+TL  FAVGFE G KI+EL  LRNLKGL
Sbjct: 627 MISLRHLEF--SSIDK----QMSPYLSQLIQLETLPKFAVGFEKGCKITELGVLRNLKGL 686

Query: 61  LKLHRLEHVESKEEAKAAKLVEKEKVEGLNLSWRGKWKNSGESE 104
           LKL RLEHVESKEEA+ AKLVEKE +E ++  W  + K   E++
Sbjct: 687 LKLQRLEHVESKEEAETAKLVEKENLEEVHFVWTKERKRKVENK 724

[Close]

BLAST of CsGy2G002038 vs. NCBI nr
Match: XP_022145125.1 (putative disease resistance RPP13-like protein 1 [Momordica charantia])

HSP 1 Score: 89.4 bits (220), Expect = 3.84e-18
Identity = 50/93 (53.76%), Postives = 63/93 (67.74%), Query Frame = 0


Query: 1   MVSLRHLEILLMGIDLPPKFEMPPYLSELVQLQTLFAFAVGFETGRKISELRGLRNLKGL 60
           +VSLRHL+  ++      K +MPP+LS L QLQTL  F VGFE G KI EL  L+NLKG 
Sbjct: 232 LVSLRHLQFPILNFTEKTK-QMPPHLSRLTQLQTLSGFVVGFENGCKIEELGPLKNLKGR 291

Query: 61  LKLHRLEHVESKEEAKAAKLVEKEKVEGLNLSW 93
           L+L  LEH++SKEEA  +KLVEK+ +  L   W
Sbjct: 292 LELSNLEHIKSKEEAMTSKLVEKKNLNELLFEW 323

[Close]

BLAST of CsGy2G002038 vs. NCBI nr
Match: XP_008462780.1 (PREDICTED: disease resistance protein RGA2-like [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 8.21e-18
Identity = 51/93 (54.84%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 1   MVSLRHLEILLMGIDLPPKFEMPPYLSELVQLQTLFAFAVGFETGRKISELRGLRNLKGL 60
           +V+LRHL+  L+G       + PPYLS+L QLQTL  FAVGFE G KI+EL  L+NL+G 
Sbjct: 628 LVNLRHLKFYLIGC------KTPPYLSQLTQLQTLSHFAVGFENGCKITELGSLKNLQGS 687

Query: 61  LKLHRLEHVESKEEAKAAKLVEKEKVEGLNLSW 93
           L L  LE VE+KEEA  A L EKE ++ L+L+W
Sbjct: 688 LSLSCLEKVENKEEANGANLAEKENLKELHLNW 714

[Close]

BLAST of CsGy2G002038 vs. ExPASy TrEMBL
Match: A0A0A0LJ04 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008000 PE=4 SV=1)

HSP 1 Score: 171 bits (432), Expect = 3.47e-47
Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MVSLRHLEILLMGIDLPPKFEMPPYLSELVQLQTLFAFAVGFETGRKISELRGLRNLKGL 60
           MVSLRHLEILLMGIDLPPKFEMPPYLSELVQLQTLFAFAVGFETGRKISEL GLRNLKGL
Sbjct: 529 MVSLRHLEILLMGIDLPPKFEMPPYLSELVQLQTLFAFAVGFETGRKISELGGLRNLKGL 588

Query: 61  LKLHRLEHVESKEEAKAAKLVEKEKVEGLNLSWRGKWKN 99
           LKLHRLEHVESKEEAKAAKLVEKEKVE L+  W G++ N
Sbjct: 589 LKLHRLEHVESKEEAKAAKLVEKEKVEELHFVWSGQFPN 627

[Close]

BLAST of CsGy2G002038 vs. ExPASy TrEMBL
Match: A0A0A0LNG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G433340 PE=4 SV=1)

HSP 1 Score: 102 bits (254), Expect = 5.46e-23
Identity = 62/104 (59.62%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 1   MVSLRHLEILLMGIDLPPKFEMPPYLSELVQLQTLFAFAVGFETGRKISELRGLRNLKGL 60
           M+SLRHLE     ID     +M PYLS+L+QL+TL  FAVGFE G KI+EL  LRNLKGL
Sbjct: 627 MISLRHLEF--SSIDK----QMSPYLSQLIQLETLPKFAVGFEKGCKITELGVLRNLKGL 686

Query: 61  LKLHRLEHVESKEEAKAAKLVEKEKVEGLNLSWRGKWKNSGESE 104
           LKL RLEHVESKEEA+ AKLVEKE +E ++  W  + K   E++
Sbjct: 687 LKLQRLEHVESKEEAETAKLVEKENLEEVHFVWTKERKRKVENK 724

[Close]

BLAST of CsGy2G002038 vs. ExPASy TrEMBL
Match: A0A6J1CTK8 (putative disease resistance RPP13-like protein 1 OS=Momordica charantia OX=3673 GN=LOC111014641 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.86e-18
Identity = 50/93 (53.76%), Postives = 63/93 (67.74%), Query Frame = 0


Query: 1   MVSLRHLEILLMGIDLPPKFEMPPYLSELVQLQTLFAFAVGFETGRKISELRGLRNLKGL 60
           +VSLRHL+  ++      K +MPP+LS L QLQTL  F VGFE G KI EL  L+NLKG 
Sbjct: 232 LVSLRHLQFPILNFTEKTK-QMPPHLSRLTQLQTLSGFVVGFENGCKIEELGPLKNLKGR 291

Query: 61  LKLHRLEHVESKEEAKAAKLVEKEKVEGLNLSW 93
           L+L  LEH++SKEEA  +KLVEK+ +  L   W
Sbjct: 292 LELSNLEHIKSKEEAMTSKLVEKKNLNELLFEW 323

[Close]

BLAST of CsGy2G002038 vs. ExPASy TrEMBL
Match: A0A1S3CHQ5 (disease resistance protein RGA2-like OS=Cucumis melo OX=3656 GN=LOC103501070 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.97e-18
Identity = 51/93 (54.84%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 1   MVSLRHLEILLMGIDLPPKFEMPPYLSELVQLQTLFAFAVGFETGRKISELRGLRNLKGL 60
           +V+LRHL+  L+G       + PPYLS+L QLQTL  FAVGFE G KI+EL  L+NL+G 
Sbjct: 628 LVNLRHLKFYLIGC------KTPPYLSQLTQLQTLSHFAVGFENGCKITELGSLKNLQGS 687

Query: 61  LKLHRLEHVESKEEAKAAKLVEKEKVEGLNLSW 93
           L L  LE VE+KEEA  A L EKE ++ L+L+W
Sbjct: 688 LSLSCLEKVENKEEANGANLAEKENLKELHLNW 714

[Close]

BLAST of CsGy2G002038 vs. ExPASy TrEMBL
Match: A0A6J1DXY1 (putative disease resistance protein RGA3 OS=Momordica charantia OX=3673 GN=LOC111025175 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.35e-18
Identity = 53/94 (56.38%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 1   MVSLRHLEI-LLMGIDLPPKFEMPPYLSELVQLQTLFAFAVGFETGRKISELRGLRNLKG 60
           +VSLRHLE    +GI      +MP +LS+LVQLQTL  F VGFE GRKI+EL  L+NLKG
Sbjct: 631 LVSLRHLEFSFFLGIK--KILQMPSHLSQLVQLQTLSTFIVGFEKGRKITELGPLKNLKG 690

Query: 61  LLKLHRLEHVESKEEAKAAKLVEKEKVEGLNLSW 93
            L L  LE ++SKEEA  AKL EKE +  L  +W
Sbjct: 691 SLNLSNLERIKSKEEAMFAKLGEKENLHELTFTW 722

[Close]

BLAST of CsGy2G002038 vs. TAIR 10
Match: AT3G14470.1 (NB-ARC domain-containing disease resistance protein )

HSP 1 Score: 48.9 bits (115), Expect = 2.9e-06
Identity = 34/94 (36.17%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 1   MVSLRHLEILLMGIDLPPKFEMPPYLSELVQLQTLFAFAVGFETGRKISELRGLRNLKGL 60
           +++LR+L+  L+G  L    +MP     L  LQTL  F V    G +ISEL GL +L G 
Sbjct: 648 LINLRYLD--LIGTKLR---QMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGK 707

Query: 61  LKLHRLEHVESKEEAKAAKLVEKEKVEGLNLSWR 95
           LK+  L+ V    +A  A L  K+ +  ++  WR
Sbjct: 708 LKIVELQRVVDVADAAEANLNSKKHLREIDFVWR 736

The following BLAST results are available for this feature:

BLAST of CsGy2G002038 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XA40	2.2e-06	38.71	Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=R...	[more]
Q9LRR4	4.1e-05	36.17	Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of CsGy2G002038 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651535.1	6.36e-58	99.04	hypothetical protein Csa_019319 [Cucumis sativus]	[more]
XP_031736677.1	3.17e-26	98.28	putative disease resistance protein RGA1 [Cucumis sativus]	[more]
XP_011650061.1	1.13e-22	59.62	putative disease resistance protein RGA3 [Cucumis sativus] >KGN63368.1 hypotheti...	[more]
XP_022145125.1	3.84e-18	53.76	putative disease resistance RPP13-like protein 1 [Momordica charantia]	[more]
XP_008462780.1	8.21e-18	54.84	PREDICTED: disease resistance protein RGA2-like [Cucumis melo]	[more]

BLAST of CsGy2G002038 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ04	3.47e-47	90.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008000 PE=4 SV=1	[more]
A0A0A0LNG8	5.46e-23	59.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G433340 PE=4 SV=1	[more]
A0A6J1CTK8	1.86e-18	53.76	putative disease resistance RPP13-like protein 1 OS=Momordica charantia OX=3673 ...	[more]
A0A1S3CHQ5	3.97e-18	54.84	disease resistance protein RGA2-like OS=Cucumis melo OX=3656 GN=LOC103501070 PE=...	[more]
A0A6J1DXY1	7.35e-18	56.38	putative disease resistance protein RGA3 OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of CsGy2G002038 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G14470.1	2.9e-06	36.17	NB-ARC domain-containing disease resistance protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G002038.1	CsGy2G002038.1	mRNA