CsGy2G001450 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G001450
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RRM domain-containing protein
Location	Gy14Chr2: 993058 .. 996543 (-)
RNA-Seq Expression	CsGy2G001450
Synteny	CsGy2G001450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGTGGACGACGACAGCTCGATATACGTCGGCGGTCTTCCTTACGATGCAACGGAGGATAGTTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGGTCAATTACTCCACCGACCGGATTCGCTCCTTTCATCTTCTTATGTCACAAATTTTCTTTTACGACTGTTGATAATATCGTTACGTCGTGTATACCTCAGAATTATGTAGCTCTTTAGGTGTTTCTGATGGAATATTTGATTGCTTGAATATAAGCTTTTTTTTCCCAAGGCTATTTGAAGTTCAGAGATCAATTCGAGCTCAATTCGAGCTCAATTGTTTAGTTTATGACGTTTCTTTAGGAGTATAGACGTGTTTTGCATTACTGAAAATGGTGAAAAAAAATTGGATTGTGTTGAAGAATTTTTGCTATTGTGGAGAATTTGAGTAGTTAGTTCACTTTTGTGTTTGTTAAAATGCTTCAATTAGGCTTGTTGAATGGCTTATTTACATGTGGTTTAATGTATTTATAGTTGAATGCTTTGATTTGGTGTTCAGATTATCAATGATCGTTCTACTAGGGGAAAGTGCTATGGCTTTGTTACTTTTACAAACCCTCGATCTGCTATTGATGCCATAAAAGACATGGATGGAAGGGTATGTTAATTTATAGCTGGAATATGAATCTTTTTAGTTTTGGATGGTTATATATTTTTCATTATGGTTTTTTAGTCTTGAGTCCTGACATTTTAAGGCTTTGAATTAGACTATTGAAGGGCGGGTTGTCCGAGTTAATGGAGTGAAGAGTCGACTTGGTGGAAGGTTTGGTAAAGAAGGTAATCGGTTCGATGCAGAGAGGGACGTGAGCTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGATAGGTATCGTCATAGAGGTAGAAACAATGACTGGTCTAGAGATCATGATCGGTCTCGAGAACATGATTTGGACAAGGAAAGAGGATATAAGCATTCACAAGATCGTGATCTACCAAGGGATCAATTTTTGGATAGGGAGCCAGAGTTGGAAAAAACTTCAAAGGATAATGAGAAGGTACATGACTTGAAGTTGAACCACGATCAAGATTGGGAAAAAGATCATGGTGCTGATTTGAGTGGAGGCAGAGGCATTGATAAAACTGATGATTATGATAAAAGCCTTGACAATGACAGAGATCAAGTCTTAAGAAGAGATAAAAGCCTTGACAATGACAGAGATCAAGTCTTAAGGAGAGATAATGGGTTAGTCTGTCCTCAAACTTATTGAAATCAATGTTAAGTAGTTTTAATATAAATTTATATTTATCTTTGGGCAGTCATCTGACTAATTTGCCCATCTGTGGCATTATGTTGAAAACTTGAGATTGCCCAAATTGTTGTGATTGGAATGTCTGATTATTTCTAGCCATTTCACGTTTGATAGTTTTGATCTGGGCAGTTAGTGATTCCAGAAATTATCTAGAGACCTTGAAAGCACTTTATTTTTTCATTTTTTATAGTTCATTGGGTTTATATTAAGGGCGGTGAACAATAGGGAAGGACATTACTACTAGCAAATTGCAGAATTAGATGGCCGTAGAGGCATGTTCCAAACAATGGATCTGCTGTTACAACGCTTAGAGAGATGAATTAGATAATAACCTTTCTGTAGGGACCACTTAAAAAATGCTTCCACATCATTCTTAGCTCATTTTAGTGCTTGCATAGTCTTGTTTAGTTTTAGAACCATCTTTTGTTTTTCTTTTCCTCAAATGTACAGACCTTCGTATTTGTATAGTATAATCCTCTATTGTAAAGGAAGTGGTTCCCTATTAACAACAACAACTTAAAATTTTCCTTTACAAATTGGAGGAATCTTTTTTAAATCCCATTTGGATGGGTTTTCTTTTGTATTGTTTCATTCAAACAATGAAATTGTTTCCTGTCAAAATAGAAAAAAAAAATGAAATGATAAATAGAAAGTAAAGGAAGAGGAAGATGGCAAATGTTCTTCTCTCCTGTTTCATACAAAGGATAGAGGAGTCACTTTTTGGTTATGATTATATGATTGCTACTATGTCTTCTCTTTTCTGTGCCTCCTGTTTCGTAAAAAAGATAGAGAAAATGGAATGACCTTTTGGCTATGATTATATGATTGCTATTATGGCTTCTGTTTTCAGTCTTACAATTGAAGGTCGAACTGCACGGGATCTTTCATCTGATTCTAGTGATGATTATATCCATGAAGTATGCTACTGCTTACCATTTTTCACCTTTTAGATTTTCCTATTAAAAAGTTACAACTTACTAATAAGCATTGAACGCAACTTTTAATCCTATTGTTTGTGTTTTAGTTAAAGGAACAACTGGAGATATCAACAGAAAGATTGGAAGAACTTAGAAAAGAGGTTTGTTTCCTTGATGATTCTCTTTTTCCATGCAGAAGAGAGAGACTCGTTTAGAAATGGTCGGGAAAGTTTTCCGAAAAATTTCAATGTGGATTAGCATAATTTAGTACTCTTGATCTGAAATTTACTTCAAAATATATGTGCATATAGGTCCCAAATAAATACATGTTGAGTTTTGTGGAAGTTCTGCAACTTGTTTTGTATCATTCTTTTAGATATCATGATTGCACTTGAATTTAAAGCCTTGGAGTTTTTCCTTTTCAGGTTTCTCAAATAGAGGAGAGGTCAGGAGAGAAAGAAAAACTTGTGGTTGAGTTGCAAAAGAAAGCCAAGGTAAAAAAATTATTTTATAACTTGCAACCATGATACTTTTGTTGTGTTCTGATTGTAGCCCTGTCCCTCAATTATAACTAATATCGACTTGGATCCAGAAACTGGAAGATGCATTGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGACGCAGCTGATCAAGGTAAACTATCTGTTCAATATTTTACTTTGTTCAATAACTGCATTGGCATTGATGATTTTGGTTTCGTTATGCAAATAACTGCAGCTCCATAAAAGTTTTCTGCTAGTAAAGGATTATTCTAAGAGACTTAAGACCAGTGAACAAGAACTTCAGGTTGGTGTTTCAACATTAAAACTCCTTGATTCTCTTCTTTCTCATAATAGTAATAGTAATAATAGAAAGAAACAGTTAACATCTAATGCTATATAAAAAATGTGCTAATGGACGAAATTGTTGGACAGGCTCTTGTAAGAACAATTAACAATGTATCTATATTTTGTTGGGAATCTTACATATGACATAATGTGAAGATTATATTTATCTATATTTGTTATTGGAGAATTATCATATATTAATATTATATGTAATGAAGCATGTGTAACCATTACCTAAATCTCCCATCTCTTTATCAGATTACTCTGCTCTGAAGATACTTTCAATTCATCCTTTTGAAATTGCTCATGAATGAATAAAACAAAATTACTATTTCTTACTTTACAGGCTCTTGTTGAATCAACTGCAATAGAGAGTGATGTTGGATGA

mRNA sequence

ATGACGGTGGACGACGACAGCTCGATATACGTCGGCGGTCTTCCTTACGATGCAACGGAGGATAGTTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGATTATCAATGATCGTTCTACTAGGGGAAAGTGCTATGGCTTTGTTACTTTTACAAACCCTCGATCTGCTATTGATGCCATAAAAGACATGGATGGAAGGACTATTGAAGGGCGGGTTGTCCGAGTTAATGGAGTGAAGAGTCGACTTGGTGGAAGGTTTGGTAAAGAAGGTAATCGGTTCGATGCAGAGAGGGACGTGAGCTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGATAGGTATCGTCATAGAGGTAGAAACAATGACTGGTCTAGAGATCATGATCGGTCTCGAGAACATGATTTGGACAAGGAAAGAGGATATAAGCATTCACAAGATCGTGATCTACCAAGGGATCAATTTTTGGATAGGGAGCCAGAGTTGGAAAAAACTTCAAAGGATAATGAGAAGGTACATGACTTGAAGTTGAACCACGATCAAGATTGGGAAAAAGATCATGGTGCTGATTTGAGTGGAGGCAGAGGCATTGATAAAACTGATGATTATGATAAAAGCCTTGACAATGACAGAGATCAAGTCTTAAGAAGAGATAAAAGCCTTGACAATGACAGAGATCAAGTCTTAAGGAGAGATAATGGTCTTACAATTGAAGGTCGAACTGCACGGGATCTTTCATCTGATTCTAGTGATGATTATATCCATGAATTAAAGGAACAACTGGAGATATCAACAGAAAGATTGGAAGAACTTAGAAAAGAGGTTTCTCAAATAGAGGAGAGGTCAGGAGAGAAAGAAAAACTTGTGGTTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGACGCAGCTGATCAAGCTCCATAAAAGTTTTCTGCTAGTAAAGGATTATTCTAAGAGACTTAAGACCAGTGAACAAGAACTTCAGGCTCTTGTTGAATCAACTGCAATAGAGAGTGATGTTGGATGA

Coding sequence (CDS)

ATGACGGTGGACGACGACAGCTCGATATACGTCGGCGGTCTTCCTTACGATGCAACGGAGGATAGTTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGATTATCAATGATCGTTCTACTAGGGGAAAGTGCTATGGCTTTGTTACTTTTACAAACCCTCGATCTGCTATTGATGCCATAAAAGACATGGATGGAAGGACTATTGAAGGGCGGGTTGTCCGAGTTAATGGAGTGAAGAGTCGACTTGGTGGAAGGTTTGGTAAAGAAGGTAATCGGTTCGATGCAGAGAGGGACGTGAGCTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGATAGGTATCGTCATAGAGGTAGAAACAATGACTGGTCTAGAGATCATGATCGGTCTCGAGAACATGATTTGGACAAGGAAAGAGGATATAAGCATTCACAAGATCGTGATCTACCAAGGGATCAATTTTTGGATAGGGAGCCAGAGTTGGAAAAAACTTCAAAGGATAATGAGAAGGTACATGACTTGAAGTTGAACCACGATCAAGATTGGGAAAAAGATCATGGTGCTGATTTGAGTGGAGGCAGAGGCATTGATAAAACTGATGATTATGATAAAAGCCTTGACAATGACAGAGATCAAGTCTTAAGAAGAGATAAAAGCCTTGACAATGACAGAGATCAAGTCTTAAGGAGAGATAATGGTCTTACAATTGAAGGTCGAACTGCACGGGATCTTTCATCTGATTCTAGTGATGATTATATCCATGAATTAAAGGAACAACTGGAGATATCAACAGAAAGATTGGAAGAACTTAGAAAAGAGGTTTCTCAAATAGAGGAGAGGTCAGGAGAGAAAGAAAAACTTGTGGTTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGACGCAGCTGATCAAGCTCCATAAAAGTTTTCTGCTAGTAAAGGATTATTCTAAGAGACTTAAGACCAGTGAACAAGAACTTCAGGCTCTTGTTGAATCAACTGCAATAGAGAGTGATGTTGGATGA

Protein sequence

MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG*

Homology

[Close]

BLAST of CsGy2G001450 vs. ExPASy Swiss-Prot
Match: O22703 (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-11
Identity = 64/188 (34.04%), Postives = 88/188 (46.81%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAI 65
           +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  KDMDGRTIEGRVVRVNGVKSRLGGR---------------FGKEGNRFDAERDVSWERDR 125
           K M GR +  +V+ VN  + ++GG                 G E   F   R   W RD 
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130

Query: 126 DRGRDYDHDRYR--------------HRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDL 164
               D D +R+R              HR R  D  RD +R RE + + +R     +DRD 
Sbjct: 131 PSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGD--RDLEREREREREFDRYMDGRRDRDG 190

[Close]

BLAST of CsGy2G001450 vs. ExPASy Swiss-Prot
Match: Q18409 (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans OX=6239 GN=rsp-6 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-11
Identity = 59/161 (36.65%), Postives = 80/161 (49.69%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIK 65
           D+ +YVGGLP DAT   L  IFD +G +  V +    + R   + FV + + R A DA++
Sbjct: 2   DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWV----ARRPPGFAFVEYDDVRDAEDAVR 61

Query: 66  DMDGRTIEG---RVVRVNGVKSRLGGRFGKEGNR---------FDAERDVSWERDRDRGR 125
            +DG  I G   RV    G +   GGR G  G R         +  +R  S  R RDRGR
Sbjct: 62  ALDGSRICGVRARVELSTGQRRGGGGRGGGFGGRGGGGRDRSPYRGDRGRSRSRSRDRGR 121

Query: 126 DYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRD 155
           D   DR R R R+    R  +RSRE +  + R  +  Q+RD
Sbjct: 122 DRSRDRSRDRSRDRSRDRSRERSRERERTRSRS-RSPQERD 157

[Close]

BLAST of CsGy2G001450 vs. ExPASy Swiss-Prot
Match: Q66II8 (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-10
Identity = 95/343 (27.70%), Postives = 155/343 (45.19%), Query Frame = 0


Query: 4   DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKII-NDRSTRGKCYGFVTFTNPRSAID 63
           D   +++V  + YD TE  LRR F++YG +  + ++ N RS + + Y F+ + + R    
Sbjct: 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHS 159

Query: 64  AIKDMDGRTIEGRVVRVNGVKS---------RLGGRFG----------------KEGNRF 123
           A K  DG+ I+GR V V+  +          RLGG  G                 + +R+
Sbjct: 160 AYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRY 219

Query: 124 DAERDVSWERDRD---RGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRD 183
           D ERD   ER+RD   R R+ D +R R R R+ +  R   RSRE + +++R  + S+D+D
Sbjct: 220 D-ERDRDRERERDRRERSRERDKERERRRSRSRE-RRRRSRSREKE-ERKRSRERSRDKD 279

Query: 184 LPRDQFLDREPELEK--TSKDNEKVHDLKLNHDQDWEK---------DHGADL------S 243
             +D+  D+E + +K    K   +  + K   D+D EK             D+      +
Sbjct: 280 KDKDKDKDKEKDKDKDRDRKRRSRSRERKRERDRDREKKEDRVEGEVPESVDVPQDDAQT 339

Query: 244 GGRGID----KTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLR-------RDNGLTIEGRT 290
           G  GID    K +  +K+ D DR++   +D+  D DRD+  R       RD     +   
Sbjct: 340 GDLGIDGIELKQEPEEKNRDRDRERDREKDRDKDRDRDRDRRRSHRDRERDKDRERDRDR 399

[Close]

BLAST of CsGy2G001450 vs. ExPASy Swiss-Prot
Match: P09406 (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis OX=8355 GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.9e-07
Identity = 91/352 (25.85%), Postives = 148/352 (42.05%), Query Frame = 0


Query: 4   DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRG----KCYGFVTFTNPRS 63
           D   +++V  + YD TE  LRR F++YG +  + I+ ++ + G    + Y F+ + + R 
Sbjct: 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERD 159

Query: 64  AIDAIKDMDGRTIEGRVVRVNGVKS---------RLGGRFG----------------KEG 123
              A K  DG+ I+GR V V+  +          RLGG  G                 + 
Sbjct: 160 MHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDT 219

Query: 124 NRFDAERDVSWERD------------RDRGRDYDHDRYR--------HRGRNNDWSRDHD 183
           +R+D ERD   ERD            R+R R    +R R         R R  + S+D D
Sbjct: 220 SRYD-ERDRERERDRRERSREREKEPRERRRSRSRERRRKSRSREKEERKRTREKSKDKD 279

Query: 184 RSREHDLDKERGYKHSQDRDLPRDQFLDRE----------PELEKTSKDNEKVHDLKLN- 243
           + ++ D       + S+ R+  R++  DRE          PE +   +D+ ++ DL ++ 
Sbjct: 280 KEKDKDNKDRDRKRRSRSRERKRERDRDREKKEERVEAEVPEADDAPQDDAQIGDLGIDG 339

Query: 244 -------HDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLR-RDKSLDNDRDQVLR 288
                   ++  E+D   D    +G +K  D D+  D DR +  R RD+  D DRD+  R
Sbjct: 340 IELKQEPEEKSRERDRERDRDREKG-EKDRDKDRDRDRDRRRSHRDRDREKDRDRDRDRR 399

[Close]

BLAST of CsGy2G001450 vs. ExPASy Swiss-Prot
Match: Q10B98 (Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0826400 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-06
Identity = 81/283 (28.62%), Postives = 128/283 (45.23%), Query Frame = 0


Query: 5   DDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDA 64
           D + ++VGG+PYD TE  L  +F  YG VV V ++ D+ T + K + F+ + + RS I A
Sbjct: 34  DSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILA 93

Query: 65  IKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDV--------SWERDRDRGRDY 124
           + +++G  + GR+VRV+ V S+   +  ++      +R+           E +R     Y
Sbjct: 94  VDNLNGAKVLGRIVRVDHV-SKYKKKEEEDEEELQKKREARGVCYAFQKGECNRGASCRY 153

Query: 125 DHDRYRHRGRNNDW-SRDHDRSR-EHDLDKERGYKHSQDRDLPRDQ-FLDREPELEKTS- 184
            HD    R  N  W S++  ++R EHD   E    H +      +Q F DR  E  K++ 
Sbjct: 154 SHD--EQRNANTGWGSKEESKARWEHDRHHEPPMSHKKFPSSAGEQRFPDRAKEENKSTG 213

Query: 185 -------KDNEKVHDLKLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDK 244
                   +  K  D +L H     KDH  D        +    D+  +NDR     RD+
Sbjct: 214 REGQSSRSEAYKDRDSRLRHSDRGSKDH--DRYRHDRSPERSRGDRQRNNDR-YAQGRDE 273

Query: 245 SLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLE 268
             +  R +V + D G   + R+ RD  +DSS  Y     E  E
Sbjct: 274 KSERYRSEV-KHDEG--DQKRSRRD--TDSSGHYERRGNEDSE 305

[Close]

BLAST of CsGy2G001450 vs. NCBI nr
Match: XP_004139331.2 (U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus] >KGN60647.1 hypothetical protein Csa_019381 [Cucumis sativus])

HSP 1 Score: 679 bits (1752), Expect = 1.35e-245
Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240
           KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL
Sbjct: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
           TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
Sbjct: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360
           AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360

[Close]

BLAST of CsGy2G001450 vs. NCBI nr
Match: TYK10694.1 (zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa])

HSP 1 Score: 637 bits (1644), Expect = 2.30e-229
Identity = 341/360 (94.72%), Postives = 345/360 (95.83%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDV+WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLP+DQFLDR+PELEKTSKDNEK+HDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240
           KLNHDQDWEKDHGADLSGG GIDKTDDYDKSL              DNDRDQVLRRDNGL
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSL--------------DNDRDQVLRRDNGL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
           TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
Sbjct: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360
           AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CsGy2G001450 vs. NCBI nr
Match: XP_008457973.1 (PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis melo] >KAA0061579.1 zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa])

HSP 1 Score: 634 bits (1635), Expect = 5.41e-228
Identity = 339/360 (94.17%), Postives = 344/360 (95.56%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDV+WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLP+DQFLDR+PELEKTSKDNEK+HDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240
           KLNHDQDWEKDHGADLSGG GIDKTDDYDKSL              DNDRDQVLRRDN L
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSL--------------DNDRDQVLRRDNSL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
           TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
Sbjct: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360
           AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CsGy2G001450 vs. NCBI nr
Match: XP_038889756.1 (serine/threonine-protein kinase prpf4B [Benincasa hispida])

HSP 1 Score: 587 bits (1514), Expect = 1.47e-209
Identity = 317/360 (88.06%), Postives = 330/360 (91.67%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
           IDAIKDMDGR+IEGRVVRVNGVKSR GGRFG+EGNRFD ERDVSWERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRSIEGRVVRVNGVKSRSGGRFGREGNRFDVERDVSWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180
           RHRGRNNDWSRD DRSREHDLDKERGY+HSQD D P+D+ LDR+PELEK+SKDNEKVHDL
Sbjct: 121 RHRGRNNDWSRDRDRSREHDLDKERGYEHSQDHDPPKDKLLDRDPELEKSSKDNEKVHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240
           KLNHDQD EK+HGAD  GG GID  DDY+KSL              DNDR+Q+ RRDNGL
Sbjct: 181 KLNHDQDSEKNHGADWIGGGGIDNADDYEKSL--------------DNDRNQLSRRDNGL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
           T EGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLV+ELQKK
Sbjct: 241 TSEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVIELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360
           AKKLEDALISAKKRSSFRQ QL KLHKSFLLVKDYS+RLKTSEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CsGy2G001450 vs. NCBI nr
Match: XP_023547216.1 (U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo])

HSP 1 Score: 556 bits (1432), Expect = 4.49e-197
Identity = 302/360 (83.89%), Postives = 318/360 (88.33%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD ERDV+WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180
           R RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLP+D  LDR PELEK  K NE+  DL
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERAYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240
           KL+H QDWEKDH AD +GG GID TDDYDKSL               +DRDQ+ RRDNGL
Sbjct: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSL--------------GSDRDQLSRRDNGL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
            IEGRTAR+LSSDSSDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKK
Sbjct: 241 AIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360
           AKKLEDALISAKKRSSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of CsGy2G001450 vs. ExPASy TrEMBL
Match: A0A0A0LIV9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G005930 PE=4 SV=1)

HSP 1 Score: 679 bits (1752), Expect = 6.54e-246
Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240
           KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL
Sbjct: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
           TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
Sbjct: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360
           AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360

[Close]

BLAST of CsGy2G001450 vs. ExPASy TrEMBL
Match: A0A5D3CHM1 (Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00030 PE=4 SV=1)

HSP 1 Score: 637 bits (1644), Expect = 1.11e-229
Identity = 341/360 (94.72%), Postives = 345/360 (95.83%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDV+WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLP+DQFLDR+PELEKTSKDNEK+HDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240
           KLNHDQDWEKDHGADLSGG GIDKTDDYDKSL              DNDRDQVLRRDNGL
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSL--------------DNDRDQVLRRDNGL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
           TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
Sbjct: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360
           AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CsGy2G001450 vs. ExPASy TrEMBL
Match: A0A5A7V7D5 (Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001420 PE=4 SV=1)

HSP 1 Score: 634 bits (1635), Expect = 2.62e-228
Identity = 339/360 (94.17%), Postives = 344/360 (95.56%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDV+WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLP+DQFLDR+PELEKTSKDNEK+HDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240
           KLNHDQDWEKDHGADLSGG GIDKTDDYDKSL              DNDRDQVLRRDN L
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSL--------------DNDRDQVLRRDNSL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
           TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
Sbjct: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360
           AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CsGy2G001450 vs. ExPASy TrEMBL
Match: A0A1S3C6W1 (zinc finger CCCH domain-containing protein 25 OS=Cucumis melo OX=3656 GN=LOC103497531 PE=4 SV=1)

HSP 1 Score: 634 bits (1635), Expect = 2.62e-228
Identity = 339/360 (94.17%), Postives = 344/360 (95.56%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDV+WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLP+DQFLDR+PELEKTSKDNEK+HDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240
           KLNHDQDWEKDHGADLSGG GIDKTDDYDKSL              DNDRDQVLRRDN L
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSL--------------DNDRDQVLRRDNSL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
           TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
Sbjct: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360
           AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CsGy2G001450 vs. ExPASy TrEMBL
Match: A0A6J1G3E0 (U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita moschata OX=3662 GN=LOC111450445 PE=4 SV=1)

HSP 1 Score: 555 bits (1429), Expect = 6.23e-197
Identity = 302/360 (83.89%), Postives = 318/360 (88.33%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD ERDV+WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180
           R RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLP+D  LDR PELEK  K NE+  DL
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240
           KL+H QDWEKDH AD +GG GID TDDYDKSL               +DRDQ+ RRDNGL
Sbjct: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSL--------------GSDRDQLSRRDNGL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
            IEGRTAR+LSSDSSDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKK
Sbjct: 241 AIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360
           AKKLEDALISAKKRSSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of CsGy2G001450 vs. TAIR 10
Match: AT5G19960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 214.5 bits (545), Expect = 1.4e-55
Identity = 158/363 (43.53%), Postives = 210/363 (57.85%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MT+DD +S+YVGGLPYD TE+++RR+F +YG+V+ VKI+NDRS RGKCYGFVTF+N RSA
Sbjct: 1   MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRD--YDHD 120
            DAI+DMDG++I GR VRVN V +R GGR      R        W+R  DR  D  Y+ D
Sbjct: 61  DDAIEDMDGKSIGGRAVRVNDVTTR-GGRMNPGPGRLQPHG--GWDRSPDRRSDGNYERD 120

Query: 121 RYRHRGRNNDWSRDHDRSREHD-LDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKV 180
           RY  R R  D  R  DR ++H  ++KER Y+HS D +   D       ++   +   E+V
Sbjct: 121 RYSDRSRERD--RSQDRRKDHRYIEKERAYEHSHDFERRNDH------DMVDRNGYKERV 180

Query: 181 HDLKLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRD 240
            D     + DW  D  + +  GRGI+ T                   S    R Q  +R+
Sbjct: 181 FD---GDEGDWRGDR-SYVDNGRGINGT-------------------SAHEGRSQETKRE 240

Query: 241 NGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVEL 300
           +   ++G   RD  S+SS D  H++KE LE   +  E LR EV  +EER   KE +  EL
Sbjct: 241 DSTILDGGRGRDHFSNSSGD--HQVKEDLEALIKMREALRDEVMVMEERLEVKEVVCSEL 300

Query: 301 QKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIES 360
           QKK+K+LED LI+ KK  S R+ +L KLHKS+  V++ +  LK  EQELQ LV S A E 
Sbjct: 301 QKKSKRLEDLLINEKKLVSQRRKELAKLHKSYSRVRECTDNLKDCEQELQLLVNSAAREG 327

[Close]

BLAST of CsGy2G001450 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-15
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 7   SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIK 66
           S +++GG+ Y   EDSLR  F  YG VV  ++I DR T R + +GFVTFT+  +A  AI+
Sbjct: 40  SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99

Query: 67  DMDGRTIEGRVVRVNGVKSRL-GGRFGKEG 95
            +DGR + GRVV+VN    R  GG FG  G
Sbjct: 100 ALDGRDLHGRVVKVNYANDRTSGGGFGGGG 129

[Close]

BLAST of CsGy2G001450 vs. TAIR 10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-12
Identity = 64/188 (34.04%), Postives = 88/188 (46.81%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAI 65
           +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  KDMDGRTIEGRVVRVNGVKSRLGGR---------------FGKEGNRFDAERDVSWERDR 125
           K M GR +  +V+ VN  + ++GG                 G E   F   R   W RD 
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130

Query: 126 DRGRDYDHDRYR--------------HRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDL 164
               D D +R+R              HR R  D  RD +R RE + + +R     +DRD 
Sbjct: 131 PSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGD--RDLEREREREREFDRYMDGRRDRDG 190

[Close]

BLAST of CsGy2G001450 vs. TAIR 10
Match: AT1G60650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-12
Identity = 64/188 (34.04%), Postives = 88/188 (46.81%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAI 65
           +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  KDMDGRTIEGRVVRVNGVKSRLGGR---------------FGKEGNRFDAERDVSWERDR 125
           K M GR +  +V+ VN  + ++GG                 G E   F   R   W RD 
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130

Query: 126 DRGRDYDHDRYR--------------HRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDL 164
               D D +R+R              HR R  D  RD +R RE + + +R     +DRD 
Sbjct: 131 PSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGD--RDLEREREREREFDRYMDGRRDRDG 190

[Close]

BLAST of CsGy2G001450 vs. TAIR 10
Match: AT3G47120.1 (RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 49.7 bits (117), Expect = 5.8e-06
Identity = 72/256 (28.12%), Postives = 111/256 (43.36%), Query Frame = 0


Query: 9   IYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDM 68
           +YVGG+P+D TE  L  +F  YG +V V +I D+ T + K + F+ + + RS I A+ ++
Sbjct: 38  VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97

Query: 69  DGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWE-----RDRDRGR-------DY 128
           +G  + GR ++V+       G + K     +  R  + E     R   RG         +
Sbjct: 98  NGALVLGRTIKVDHC-----GAYKKHEEEDEETRRQNREARGVCRAFQRGECTRGDSCKF 157

Query: 129 DHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNE 188
            HD    R  N  W  + DRS + D DK R  +    R   R +      +  K S D +
Sbjct: 158 SHD--EKRAANTGWGHEEDRSSKWDHDKNREGR-GVCRAFQRGEC--TRGDSCKFSHDEK 217

Query: 189 KVHDLKLNHDQD----WEKD------HGADLSGGRGIDKTDDYDKSL--DNDRDQVLRRD 240
           +       H++D    W++D       G    G RG  K D  +KS     D D    R 
Sbjct: 218 RAATTGWGHEEDRSSKWDQDKLNGAKKGGTSFGNRGDFKPDVEEKSYRGRGDGDASYGRP 277

The following BLAST results are available for this feature:

BLAST of CsGy2G001450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22703	1.5e-11	34.04	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE...	[more]
Q18409	2.0e-11	36.65	Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans OX=62...	[more]
Q66II8	1.7e-10	27.70	U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp...	[more]
P09406	3.9e-07	25.85	U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis OX=8355 GN=snrnp70 P...	[more]
Q10B98	1.9e-06	28.62	Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of CsGy2G001450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139331.2	1.35e-245	100.00	U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus] >KGN60647.1 hypothet...	[more]
TYK10694.1	2.30e-229	94.72	zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa]	[more]
XP_008457973.1	5.41e-228	94.17	PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis melo] >KAA0061...	[more]
XP_038889756.1	1.47e-209	88.06	serine/threonine-protein kinase prpf4B [Benincasa hispida]	[more]
XP_023547216.1	4.49e-197	83.89	U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy2G001450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIV9	6.54e-246	100.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G005930 PE=4 SV...	[more]
A0A5D3CHM1	1.11e-229	94.72	Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7V7D5	2.62e-228	94.17	Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3C6W1	2.62e-228	94.17	zinc finger CCCH domain-containing protein 25 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1G3E0	6.23e-197	83.89	U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of CsGy2G001450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19960.1	1.4e-55	43.53	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	1.4e-15	47.78	glycine-rich RNA-binding protein 3	[more]
AT1G60650.1	1.1e-12	34.04	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.2	1.1e-12	34.04	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT3G47120.1	5.8e-06	28.13	RNA recognition motif (RRM)-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 332..352
None	No IPR available	COILS	Coil	Coil	coord: 259..314
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..212
None	No IPR available	PANTHER	PTHR23147:SF172	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..358
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..358
None	No IPR available	CDD	cd00590	RRM_SF	coord: 9..80 e-value: 1.52965E-22 score: 87.7457
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..80 e-value: 1.4E-23 score: 94.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..78 e-value: 4.7E-21 score: 74.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..84 score: 19.58716
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..96 e-value: 3.5E-24 score: 87.3
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G001450.2	CsGy2G001450.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding