CsGy1G032980 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G032980
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr1: 32686366 .. 32686794 (-)
RNA-Seq Expression	CsGy1G032980
Synteny	CsGy1G032980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACATTCCAAAATTTCAAGTAATTTTTGTTTAATTATCTTCGAATTATTTGAATTCAATTTAAAAGTTAAAGAGATTTTATTTTGGGTTAATTTGGGAGGATGTAGGTTATCAAAAAAGAATTTGGGAGGATGTAGGTTATCAAAAGGGTGATTTATTTGGTTAAATTAGAAGATAGTGTGGGTGTGTTATTAAGGTTGTATTGGAAAGGAAGAAAAAGAAAAATTACTCTTATTCTTTTTCTCCTTTTTGGCAGTTGCCACAAGCCCTCCACCTTCAACCAGTCACCCACCGTCGGCTAAAAGTTCTATCCACGCTTCAACTTTGTTCACGTCTGTCGAGTTCAACCATGTGAGTTCTTCAAGTCCCACCTCAGCCGTCGAGTGTCAACCTTGTTTTGGCGCACCGCTCATGTCTGCTGTTTGA

mRNA sequence

ATGTTACATTCCAAAATTTCAATTGCCACAAGCCCTCCACCTTCAACCAGTCACCCACCGTCGGCTAAAAGTTCTATCCACGCTTCAACTTTGTTCACGTCTGTCGAGTTCAACCATGTGAGTTCTTCAAGTCCCACCTCAGCCGTCGAGTGTCAACCTTGTTTTGGCGCACCGCTCATGTCTGCTGTTTGA

Coding sequence (CDS)

ATGTTACATTCCAAAATTTCAATTGCCACAAGCCCTCCACCTTCAACCAGTCACCCACCGTCGGCTAAAAGTTCTATCCACGCTTCAACTTTGTTCACGTCTGTCGAGTTCAACCATGTGAGTTCTTCAAGTCCCACCTCAGCCGTCGAGTGTCAACCTTGTTTTGGCGCACCGCTCATGTCTGCTGTTTGA

Protein sequence

MLHSKISIATSPPPSTSHPPSAKSSIHASTLFTSVEFNHVSSSSPTSAVECQPCFGAPLMSAV*

Homology

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BLAST of CsGy1G032980 vs. NCBI nr
Match: KAE8653668.1 (hypothetical protein Csa_023632, partial [Cucumis sativus])

HSP 1 Score: 105 bits (262), Expect = 3.06e-28
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 9  ATSPPPSTSHPPSAKSSIHASTLFTSVEFNHVSSSSPTSAVECQPCFGAPLMSAV 63
          A SPPPSTSHPPSAKSSIHASTLFTSVEFNHVSSSSPTSAVECQPCFGAPLMSAV
Sbjct: 1  AASPPPSTSHPPSAKSSIHASTLFTSVEFNHVSSSSPTSAVECQPCFGAPLMSAV 55

The following BLAST results are available for this feature:

BLAST of CsGy1G032980 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G032980 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653668.1	3.06e-28	98.18	hypothetical protein Csa_023632, partial [Cucumis sativus]	[more]

BLAST of CsGy1G032980 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsGy1G032980 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G032980.2	CsGy1G032980.2	mRNA