CsGy1G031140 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G031140
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Protein TIC 20
Location	Gy14Chr1: 29928395 .. 29930897 (+)
RNA-Seq Expression	CsGy1G031140
Synteny	CsGy1G031140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCGGAGTTCCCTATAAAAGGTCTGAGGTACTTGATAATGAGAGACAACACTATTTGTGTAGATATTTTTAAAATCGAGCTGACCCTAATTCGGTAGTTAATCGGGTTGGGAAGCCGTTTTTATAATTTAGCGTAAAAAGAATTATTTGAATTGAACTAAAAAGCCGTCGGAAAAGAGCATCGTTTCATCTTCTTCGTCCTCACTCTCCTACAAAGAAATGGCTTCCACTTCCATCCCCCTCCTCAATCTCTCCGCCAAAACCTCCATTAGAGCAGCTCTATTCCCTCACTCCTCCGCCATCAAATCTCGCCACCATTCTTCTCTCCCTTTTCTCCCCTCTAAGTCCCCAAAATTCACCCCCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCTGTTGCTTACACTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCAGCCCTCGGCTTCGCCTTCGAGCCGCTGCTCCCGATTCTAGGGCTTTATCGCTCGATCCCGCATTCCAGCTTCGTCGCGTTCTTCGCTTTATACTTGGGCGTGGTTCGAAACCCCAGTTTCAATCACTATGTGCGCTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGATACAGAGGATCCTGAGTCCGGGAAGAAGCGGGATAGGGTTCAAGATAATGGTTTGGAGCCATAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTATATAGTGTGGTTTCTTGTCTTCTCGGTCGAACCCCACACTTGCCCATTGTTGCTGATGCTGCTGGCAGGCAGATTTAGCTTCCAGGTTTGTTCTTCAACCCTTTCTCTTTCATCTATTTTTGGGATTTTTTTGGATTCAGGAGTTTGTAATTTGGGATTTTGATTTTTCTTTTCTGGAAGTTTTGGGGAAAATCTGAAATCAAATCAATGTAGGTTGGTCTGTACACTTTGATAAGATGTATGCGAGAGGAATTAAGAAGAAGTGTATTTTGATTGTGCATTTTTTTTTTTTTTTTGTTACGAGAGTTCTTTGCAGCTATACTAAATAAGTGTTTTTTGAAGCATTTGTGCAAGGAAACTGTAGATAATGAGATGACTTAAATACTATTTGGTACGCCATTACTTATCAAAAGGTTCATTTTGGTTTACATAGTTTCAAATTTTGTTTATTTTGGTACTCTATTTTCAAAAACAAGAACCAAAAGGTATATAGACCAAATTAGTGTTTGAACGTAATAGATGAAGGAAGTGATGATATTGGAGAGAACCATGTGGATGGAGAAGTGTTATGTGAAATAGGACCTGGTATTTTTTTTTTTTGAATGTAAGATCCACTATTGCAAATACATGTGGGAATCTTAAAACTAAGAAAAGCAAGAAGCAGTGTGTAAATTGAATCTACTTCTATATCCACTGAATATGTGAAGCTTGCAAGAGTGTTGGAGAGAGGATCTCTGTTTCACCGTGTAAGAAATTGGTAGCAATTTTTTTCTTTAATATGATGATAGGTGGATTCGATCTTTTATATTGTATATCATAATTATAATTAGGTGGAAGTTATGTCACAGCTAGGTAGGTTTGTAGCAACTAATGGTGGAGGGAAGCAAGCTGAAGTGAACATTGTTCCACTAGTATAAAGTATGCACCTCAATCTGGAGGTTGGAGGTTAAACCATCTCGCCAAACAATTGTGTAAGGAAAGGATGGTGATTCTTTGTAGTTTGGTTGAAAGAATGAGAGGCCCCATGAACTTTTGAAGAATTGATAGAAAAAATGGATGGGGACTTTCTTTCACTTTTATTTTTTTTATAAAATTTGATCTCTAAAACTTGTGATAGTTGTTAATTTGATCTCCATAGCAATCTTGGCTGACAAGCATCAAGATAACTCATTGAAATAGTTGGCTAAACAGAAGAAACTTATTGTGCTATTTTTGACAACTATCACTATTGACAAACACCTTTATAAAATATAATGGGTAATCTAGTTCATCCTCAATTGTTGGGGTACCGACAATTAGTTGACATTCTCACAAAGTATCTTTTTGGGTAAAGTATGAACATCTGAACTCAAGTTGGCCTGCAAAAGCAAAGTGAGTTATCCAATGTAATTAACATGACTTGCCTTTTGTAAGGTTGAAGGTTTAATCTTCTAATTGATCTATGTAAGCGGTGATCTTTCCATATGTGGTAAACGTATGATTATAGTGTGAAATGAGAAAAGATATCTCAATTCAAGGAAGGTAGATGGAAGTAAAATTACAAAAGAGAATAAGACCTCAAAATTGAAGTGATGTTACAACTACTTGCTTTGCAACTAAGCCCAATGCTAATAAAGACTGGCAATTTAAAAGATTGTATCTTTTCTAACTATTCCAAAGAGCCTGAACATCACATATAATAGTTAGAGAGAAAGAGGAATCGTTTATTGAGTCGTCTAGAGAAGGATGATGGTAG

mRNA sequence

ATCCGGAGTTCCCTATAAAAGGTCTGAGGTACTTGATAATGAGAGACAACACTATTTGTGTAGATATTTTTAAAATCGAGCTGACCCTAATTCGGTAGTTAATCGGGTTGGGAAGCCGTTTTTATAATTTAGCGTAAAAAGAATTATTTGAATTGAACTAAAAAGCCGTCGGAAAAGAGCATCGTTTCATCTTCTTCGTCCTCACTCTCCTACAAAGAAATGGCTTCCACTTCCATCCCCCTCCTCAATCTCTCCGCCAAAACCTCCATTAGAGCAGCTCTATTCCCTCACTCCTCCGCCATCAAATCTCGCCACCATTCTTCTCTCCCTTTTCTCCCCTCTAAGTCCCCAAAATTCACCCCCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCTGTTGCTTACACTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCAGCCCTCGGCTTCGCCTTCGAGCCGCTGCTCCCGATTCTAGGGCTTTATCGCTCGATCCCGCATTCCAGCTTCGTCGCGTTCTTCGCTTTATACTTGGGCGTGGTTCGAAACCCCAGTTTCAATCACTATGTGCGCTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGATACAGAGGATCCTGAGTCCGGGAAGAAGCGGGATAGGGTTCAAGATAATGGTTTGGAGCCATAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTATATAGTGTGGTTTCTTGTCTTCTCGGTCGAACCCCACACTTGCCCATTGTTGCTGATGCTGCTGGCAGGCAGATTTAGCTTCCAGCTAGGTAGGTTTGTAGCAACTAATGGTGGAGGGAAGCAAGCTGAAGTGAACATTGTTCCACTAGTATAAAGTATGCACCTCAATCTGGAGGTTGGAGGTTAAACCATCTCGCCAAACAATTGTGTAAGGAAAGGATGGTGATTCTTTGTAGTTTGGTTGAAAGAATGAGAGGCCCCATGAACTTTTGAAGAATTGATAGAAAAAATGGATGGGGACTTTCTTTCACTTTTATTTTTTTTATAAAATTTGATCTCTAAAACTTGTGATAGTTGTTAATTTGATCTCCATAGCAATCTTGGCTGACAAGCATCAAGATAACTCATTGAAATAGTTGGCTAAACAGAAGAAACTTATTGTGCTATTTTTGACAACTATCACTATTGACAAACACCTTTATAAAATATAATGGGTAATCTAGTTCATCCTCAATTGTTGGGGTACCGACAATTAGTTGACATTCTCACAAAGTATCTTTTTGGGTAAAGTATGAACATCTGAACTCAAGTTGGCCTGCAAAAGCAAAGTGAGTTATCCAATGTAATTAACATGACTTGCCTTTTGTAAGGTTGAAGGTTTAATCTTCTAATTGATCTATGTAAGCGGTGATCTTTCCATATGTGGTAAACGTATGATTATAGTGTGAAATGAGAAAAGATATCTCAATTCAAGGAAGGTAGATGGAAGTAAAATTACAAAAGAGAATAAGACCTCAAAATTGAAGTGATGTTACAACTACTTGCTTTGCAACTAAGCCCAATGCTAATAAAGACTGGCAATTTAAAAGATTGTATCTTTTCTAACTATTCCAAAGAGCCTGAACATCACATATAATAGTTAGAGAGAAAGAGGAATCGTTTATTGAGTCGTCTAGAGAAGGATGATGGTAG

Coding sequence (CDS)

ATGGCTTCCACTTCCATCCCCCTCCTCAATCTCTCCGCCAAAACCTCCATTAGAGCAGCTCTATTCCCTCACTCCTCCGCCATCAAATCTCGCCACCATTCTTCTCTCCCTTTTCTCCCCTCTAAGTCCCCAAAATTCACCCCCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCTGTTGCTTACACTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCAGCCCTCGGCTTCGCCTTCGAGCCGCTGCTCCCGATTCTAGGGCTTTATCGCTCGATCCCGCATTCCAGCTTCGTCGCGTTCTTCGCTTTATACTTGGGCGTGGTTCGAAACCCCAGTTTCAATCACTATGTGCGCTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGATACAGAGGATCCTGAGTCCGGGAAGAAGCGGGATAGGGTTCAAGATAATGGTTTGGAGCCATAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTATATAGTGTGGTTTCTTGTCTTCTCGGTCGAACCCCACACTTGCCCATTGTTGCTGATGCTGCTGGCAGGCAGATTTAG

Protein sequence

MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI*

Homology

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BLAST of CsGy1G031140 vs. ExPASy Swiss-Prot
Match: O82251 (Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.7e-61
Identity = 113/160 (70.62%), Postives = 133/160 (83.12%), Query Frame = 0


Query: 50  RMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHS 109
           R SY PTPAT+R+IS  +Y LPFFNSLQYGRFLFAQYP LG  FEP+ PIL LYRS+P++
Sbjct: 49  RASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYA 108

Query: 110 SFVAFFALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGR-SGIGFKIMV 169
           SFVAFF LYLGVVRN SF+ YVRFN+MQAVTLDVLL VP+L+ RIL PG+  G G K M+
Sbjct: 109 SFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMM 168

Query: 170 WSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           W H G+FVFS +CF+Y VVS LLG+TP++P VADAAGRQ+
Sbjct: 169 WGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

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BLAST of CsGy1G031140 vs. ExPASy Swiss-Prot
Match: Q9FM67 (Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-33
Identity = 68/151 (45.03%), Postives = 101/151 (66.89%), Query Frame = 0


Query: 58  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 117
           A+DR+ISAV Y  PFF+ +QYG+F+  QY       +PL P +  ++S P + F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 118 YLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVF 177
           Y  VVRNP+F+ YVRFN+MQA+ LDVLL+ P L++R  +P R G G  +++   + +F+F
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 178 SVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
            ++  +Y   +CL G TP LP+VA+AA RQ+
Sbjct: 179 LLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

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BLAST of CsGy1G031140 vs. ExPASy Swiss-Prot
Match: P73387 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1737 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-20
Identity = 50/154 (32.47%), Postives = 87/154 (56.49%), Query Frame = 0


Query: 60  DRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYL 119
           DR  SA+ Y +P  ++  +G FL  Q+P L   + P++P+L  Y   P +SF+ F  L++
Sbjct: 11  DRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASFIIFIVLFM 70

Query: 120 GVVRNPSFNHYVRFNSMQAVTLDVL-----LVVPLLIQRILSPGRSGIGFKIMVWSHNGL 179
            VVRN + +H++RFN+MQA+ + +L     L+V  +IQ +   G       +    +N  
Sbjct: 71  AVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVFGQG------LVTETLYNFA 130

Query: 180 FVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           F+ ++ C  + +V  +LGR   +P ++DAA  Q+
Sbjct: 131 FLGALACGFFGIVQSVLGRYAEIPTISDAAYSQV 158

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BLAST of CsGy1G031140 vs. ExPASy Swiss-Prot
Match: Q9ZST8 (Protein TIC 20, chloroplastic OS=Pisum sativum OX=3888 GN=TIC20 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.6e-07
Identity = 49/193 (25.39%), Postives = 88/193 (45.60%), Query Frame = 0


Query: 35  SLPFLP-----SKSPKFTPIRMSYNPTPATD------RLISAVAYTLPFFNSLQYGRFLF 94
           ++P LP     S +P+ T     +   P T       R +S + Y LPF  +  Y R  +
Sbjct: 67  TIPVLPTLHKSSTTPRATKDSSGFRFPPMTKKPRWWWRTLSCIPYLLPFHQAWMYARTAY 126

Query: 95  AQYPALGFAFEPL-LPILGLYRSIPHSSFVAFFAL-YLGVVRNPSFNHYVRFNSMQAVTL 154
             +P + + F+P+  P L    ++P  S +A+F + YL +VR   + H+ RF+    + +
Sbjct: 127 HLHPFIPY-FQPMTYPFLMAIGTLPRWSLIAYFLIAYLTIVRRKEWPHFFRFHVAVGMLI 186

Query: 155 DVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSV--LCFLYSVVSC----LLGRTP 209
           ++ L V  ++ R +         +   W   G+  ++     FL++ + C    L+G   
Sbjct: 187 EIALQVTGIVSRWMP--------RSFYWGKLGMHFWTTAFFVFLFTTIECIRCALVGMYA 246

[Close]

BLAST of CsGy1G031140 vs. ExPASy Swiss-Prot
Match: Q8GZ79 (Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.3e-04
Identity = 55/225 (24.44%), Postives = 91/225 (40.44%), Query Frame = 0


Query: 3   STSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLP-SKSPKFTP-----IRMSYNPT 62
           S  +PL  LSA +S+        +  +     +LP LP  +    TP     +  S+   
Sbjct: 61  SRGVPLSYLSASSSLLL------NGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFP 120

Query: 63  PATD------RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSS 122
           P T       R ++ + Y +P   +  Y    +  +P L        P LG    +P   
Sbjct: 121 PMTKKPQWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWF 180

Query: 123 FVA-FFALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVW 182
            +A FF  YLG+VR   + H+ RF+ +  + L++ L V   + + +  G        + W
Sbjct: 181 LMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLG--------VYW 240

Query: 183 SHNGLFVFSVLCFLY------SVVSCLLGRTPHLPIVADAAGRQI 209
              G+  ++ + F Y      S+   L G    +P V DAA  QI
Sbjct: 241 GKFGMHFWTAVAFAYLFTVLESIRCALAGMYADIPFVCDAAYIQI 271

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BLAST of CsGy1G031140 vs. NCBI nr
Match: XP_004139099.1 (protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660219.1 protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660220.1 protein TIC 20-II, chloroplastic [Cucumis sativus] >KGN66660.1 hypothetical protein Csa_006938 [Cucumis sativus])

HSP 1 Score: 406 bits (1043), Expect = 1.28e-142
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60
           MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180
           VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180

Query: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208
           CFLYSVVSCLLGRTPHLPIVADAAGRQI
Sbjct: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208

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BLAST of CsGy1G031140 vs. NCBI nr
Match: XP_008443678.1 (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443680.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443681.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443682.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443683.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >KAA0038239.1 protein TIC 20-II [Cucumis melo var. makuwa] >TYK30638.1 protein TIC 20-II [Cucumis melo var. makuwa])

HSP 1 Score: 384 bits (985), Expect = 9.93e-134
Identity = 199/211 (94.31%), Postives = 203/211 (96.21%), Query Frame = 0


Query: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKF---TPIRMSYNPTP 60
           MASTSIPLLNLSAKT+IRAALFPHSS IKSRHH SLPFLPSKS K    TPIRMSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 61  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 121 YLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVF 180
           YLGVVRNPSF+HYVRFNSMQAVTLDVLLVVPLLIQRILSPGR GIGFKIMVWSHNGLFVF
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWSHNGLFVF 180

Query: 181 SVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 208
           SVLCFLYS+VSCLLGRTPHLPIVADAAGRQI
Sbjct: 181 SVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

[Close]

BLAST of CsGy1G031140 vs. NCBI nr
Match: XP_038879337.1 (protein TIC 20-II, chloroplastic [Benincasa hispida])

HSP 1 Score: 369 bits (946), Expect = 7.86e-128
Identity = 187/208 (89.90%), Postives = 197/208 (94.71%), Query Frame = 0


Query: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60
           MAS+SIPLLNLS KT+ RAAL PHSSAIKSRH SSLPFLPSK  K T  RMSYNPTPATD
Sbjct: 1   MASSSIPLLNLSVKTAFRAALIPHSSAIKSRHRSSLPFLPSKPAKSTVFRMSYNPTPATD 60

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120
           R+ISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPH+SFVAFFALYLG
Sbjct: 61  RVISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHASFVAFFALYLG 120

Query: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180
           +VRNPSF+HYVRFNSMQAVTLDVLLVVPLLIQRILSPGR G+GF+IMVW HNGLFVFSVL
Sbjct: 121 LVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGLGFQIMVWGHNGLFVFSVL 180

Query: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208
           CF+YS+VSCLLGRTPHLPIVADAAGRQI
Sbjct: 181 CFVYSLVSCLLGRTPHLPIVADAAGRQI 208

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BLAST of CsGy1G031140 vs. NCBI nr
Match: XP_022987499.1 (protein TIC 20-II, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 350 bits (899), Expect = 1.23e-120
Identity = 178/208 (85.58%), Postives = 189/208 (90.87%), Query Frame = 0


Query: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60
           MAS SIPLLNLS K +I+AAL PH SAIKSRH  SLP LPS+  K   IRMSYNPTPATD
Sbjct: 3   MASCSIPLLNLSTKPAIKAALIPHYSAIKSRHCFSLPLLPSRPAKSPAIRMSYNPTPATD 62

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYP LG AFEPLLPILGLYRSIPHSSF+AFFA YLG
Sbjct: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122

Query: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180
           VVRNPSF+ Y RFNSMQA+TLDVLLVVPLL+QRILSPGRSG+GF+IM WSHNGLFVFSVL
Sbjct: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGRSGLGFQIMAWSHNGLFVFSVL 182

Query: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208
           CFLYSVVSC+LGRTPHLPIVADAAGRQ+
Sbjct: 183 CFLYSVVSCILGRTPHLPIVADAAGRQV 210

[Close]

BLAST of CsGy1G031140 vs. NCBI nr
Match: XP_022960653.1 (protein TIC 20-II, chloroplastic-like [Cucurbita moschata] >XP_022960654.1 protein TIC 20-II, chloroplastic-like [Cucurbita moschata] >KAG6590106.1 Protein TIC 20-II, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 350 bits (897), Expect = 2.47e-120
Identity = 178/208 (85.58%), Postives = 189/208 (90.87%), Query Frame = 0


Query: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60
           MAS SIPLLNLS K +I+AAL PH SAIKSRH  SLP LPSK  K   IRMSYNPTPATD
Sbjct: 3   MASCSIPLLNLSIKPAIKAALIPHYSAIKSRHCFSLPLLPSKPAKSPAIRMSYNPTPATD 62

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYP LG AFEPLLPILGLYRSIPHSSF+AFFA YLG
Sbjct: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122

Query: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180
           VVRNPSF+ Y RFNSMQA+TLDVLLVVPLL+QRILSPG+SG+GF+IM WSHNGLFVFSVL
Sbjct: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFQIMAWSHNGLFVFSVL 182

Query: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208
           CFLYSVVSC+LGRTPHLPIVADAAGRQ+
Sbjct: 183 CFLYSVVSCILGRTPHLPIVADAAGRQV 210

[Close]

BLAST of CsGy1G031140 vs. ExPASy TrEMBL
Match: A0A0A0LXS7 (Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_1G654890 PE=3 SV=1)

HSP 1 Score: 406 bits (1043), Expect = 6.21e-143
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60
           MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180
           VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180

Query: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208
           CFLYSVVSCLLGRTPHLPIVADAAGRQI
Sbjct: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208

[Close]

BLAST of CsGy1G031140 vs. ExPASy TrEMBL
Match: A0A1S3B9C6 (Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103487217 PE=3 SV=1)

HSP 1 Score: 384 bits (985), Expect = 4.81e-134
Identity = 199/211 (94.31%), Postives = 203/211 (96.21%), Query Frame = 0


Query: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKF---TPIRMSYNPTP 60
           MASTSIPLLNLSAKT+IRAALFPHSS IKSRHH SLPFLPSKS K    TPIRMSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 61  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 121 YLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVF 180
           YLGVVRNPSF+HYVRFNSMQAVTLDVLLVVPLLIQRILSPGR GIGFKIMVWSHNGLFVF
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWSHNGLFVF 180

Query: 181 SVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 208
           SVLCFLYS+VSCLLGRTPHLPIVADAAGRQI
Sbjct: 181 SVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

[Close]

BLAST of CsGy1G031140 vs. ExPASy TrEMBL
Match: A0A5D3E499 (Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00600 PE=3 SV=1)

HSP 1 Score: 384 bits (985), Expect = 4.81e-134
Identity = 199/211 (94.31%), Postives = 203/211 (96.21%), Query Frame = 0


Query: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKF---TPIRMSYNPTP 60
           MASTSIPLLNLSAKT+IRAALFPHSS IKSRHH SLPFLPSKS K    TPIRMSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 61  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 121 YLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVF 180
           YLGVVRNPSF+HYVRFNSMQAVTLDVLLVVPLLIQRILSPGR GIGFKIMVWSHNGLFVF
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWSHNGLFVF 180

Query: 181 SVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 208
           SVLCFLYS+VSCLLGRTPHLPIVADAAGRQI
Sbjct: 181 SVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

[Close]

BLAST of CsGy1G031140 vs. ExPASy TrEMBL
Match: A0A6J1JJ22 (Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111485044 PE=3 SV=1)

HSP 1 Score: 350 bits (899), Expect = 5.93e-121
Identity = 178/208 (85.58%), Postives = 189/208 (90.87%), Query Frame = 0


Query: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60
           MAS SIPLLNLS K +I+AAL PH SAIKSRH  SLP LPS+  K   IRMSYNPTPATD
Sbjct: 3   MASCSIPLLNLSTKPAIKAALIPHYSAIKSRHCFSLPLLPSRPAKSPAIRMSYNPTPATD 62

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYP LG AFEPLLPILGLYRSIPHSSF+AFFA YLG
Sbjct: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122

Query: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180
           VVRNPSF+ Y RFNSMQA+TLDVLLVVPLL+QRILSPGRSG+GF+IM WSHNGLFVFSVL
Sbjct: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGRSGLGFQIMAWSHNGLFVFSVL 182

Query: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208
           CFLYSVVSC+LGRTPHLPIVADAAGRQ+
Sbjct: 183 CFLYSVVSCILGRTPHLPIVADAAGRQV 210

[Close]

BLAST of CsGy1G031140 vs. ExPASy TrEMBL
Match: A0A6J1HBN6 (Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111461378 PE=3 SV=1)

HSP 1 Score: 350 bits (897), Expect = 1.20e-120
Identity = 178/208 (85.58%), Postives = 189/208 (90.87%), Query Frame = 0


Query: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60
           MAS SIPLLNLS K +I+AAL PH SAIKSRH  SLP LPSK  K   IRMSYNPTPATD
Sbjct: 3   MASCSIPLLNLSIKPAIKAALIPHYSAIKSRHCFSLPLLPSKPAKSPAIRMSYNPTPATD 62

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYP LG AFEPLLPILGLYRSIPHSSF+AFFA YLG
Sbjct: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122

Query: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180
           VVRNPSF+ Y RFNSMQA+TLDVLLVVPLL+QRILSPG+SG+GF+IM WSHNGLFVFSVL
Sbjct: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFQIMAWSHNGLFVFSVL 182

Query: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208
           CFLYSVVSC+LGRTPHLPIVADAAGRQ+
Sbjct: 183 CFLYSVVSCILGRTPHLPIVADAAGRQV 210

[Close]

BLAST of CsGy1G031140 vs. TAIR 10
Match: AT2G47840.1 (Uncharacterised conserved protein ycf60 )

HSP 1 Score: 236.5 bits (602), Expect = 1.9e-62
Identity = 113/160 (70.62%), Postives = 133/160 (83.12%), Query Frame = 0


Query: 50  RMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHS 109
           R SY PTPAT+R+IS  +Y LPFFNSLQYGRFLFAQYP LG  FEP+ PIL LYRS+P++
Sbjct: 49  RASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYA 108

Query: 110 SFVAFFALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGR-SGIGFKIMV 169
           SFVAFF LYLGVVRN SF+ YVRFN+MQAVTLDVLL VP+L+ RIL PG+  G G K M+
Sbjct: 109 SFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMM 168

Query: 170 WSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           W H G+FVFS +CF+Y VVS LLG+TP++P VADAAGRQ+
Sbjct: 169 WGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]

BLAST of CsGy1G031140 vs. TAIR 10
Match: AT5G55710.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-34
Identity = 68/151 (45.03%), Postives = 101/151 (66.89%), Query Frame = 0


Query: 58  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 117
           A+DR+ISAV Y  PFF+ +QYG+F+  QY       +PL P +  ++S P + F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 118 YLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVF 177
           Y  VVRNP+F+ YVRFN+MQA+ LDVLL+ P L++R  +P R G G  +++   + +F+F
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 178 SVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
            ++  +Y   +CL G TP LP+VA+AA RQ+
Sbjct: 179 LLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

[Close]

BLAST of CsGy1G031140 vs. TAIR 10
Match: AT1G04940.1 (translocon at the inner envelope membrane of chloroplasts 20 )

HSP 1 Score: 47.4 bits (111), Expect = 1.7e-05
Identity = 55/225 (24.44%), Postives = 91/225 (40.44%), Query Frame = 0


Query: 3   STSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLP-SKSPKFTP-----IRMSYNPT 62
           S  +PL  LSA +S+        +  +     +LP LP  +    TP     +  S+   
Sbjct: 61  SRGVPLSYLSASSSLLL------NGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFP 120

Query: 63  PATD------RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSS 122
           P T       R ++ + Y +P   +  Y    +  +P L        P LG    +P   
Sbjct: 121 PMTKKPQWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWF 180

Query: 123 FVA-FFALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVW 182
            +A FF  YLG+VR   + H+ RF+ +  + L++ L V   + + +  G        + W
Sbjct: 181 LMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLG--------VYW 240

Query: 183 SHNGLFVFSVLCFLY------SVVSCLLGRTPHLPIVADAAGRQI 209
              G+  ++ + F Y      S+   L G    +P V DAA  QI
Sbjct: 241 GKFGMHFWTAVAFAYLFTVLESIRCALAGMYADIPFVCDAAYIQI 271

The following BLAST results are available for this feature:

BLAST of CsGy1G031140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82251	2.7e-61	70.63	Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=...	[more]
Q9FM67	1.4e-33	45.03	Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 ...	[more]
P73387	1.4e-20	32.47	Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 ...	[more]
Q9ZST8	6.6e-07	25.39	Protein TIC 20, chloroplastic OS=Pisum sativum OX=3888 GN=TIC20 PE=1 SV=1	[more]
Q8GZ79	2.3e-04	24.44	Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 ...	[more]

BLAST of CsGy1G031140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139099.1	1.28e-142	100.00	protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660219.1 protein TIC 2...	[more]
XP_008443678.1	9.93e-134	94.31	PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443680.1 PREDI...	[more]
XP_038879337.1	7.86e-128	89.90	protein TIC 20-II, chloroplastic [Benincasa hispida]	[more]
XP_022987499.1	1.23e-120	85.58	protein TIC 20-II, chloroplastic-like [Cucurbita maxima]	[more]
XP_022960653.1	2.47e-120	85.58	protein TIC 20-II, chloroplastic-like [Cucurbita moschata] >XP_022960654.1 prote...	[more]

BLAST of CsGy1G031140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXS7	6.21e-143	100.00	Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_1G654890 PE=3 SV=1	[more]
A0A1S3B9C6	4.81e-134	94.31	Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103487217 PE=3 SV=1	[more]
A0A5D3E499	4.81e-134	94.31	Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G006...	[more]
A0A6J1JJ22	5.93e-121	85.58	Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111485044 PE=3 SV=1	[more]
A0A6J1HBN6	1.20e-120	85.58	Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111461378 PE=3 SV=1	[more]

BLAST of CsGy1G031140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47840.1	1.9e-62	70.63	Uncharacterised conserved protein ycf60	[more]
AT5G55710.1	1.0e-34	45.03	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G04940.1	1.7e-05	24.44	translocon at the inner envelope membrane of chloroplasts 20	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005691	Chloroplast protein import component Tic20	PFAM	PF16166	TIC20	coord: 61..204 e-value: 5.1E-45 score: 153.5
IPR005691	Chloroplast protein import component Tic20	PANTHER	PTHR33510	PROTEIN TIC 20-II, CHLOROPLASTIC	coord: 44..208
None	No IPR available	PANTHER	PTHR33510:SF5	PROTEIN TIC 20-II, CHLOROPLASTIC	coord: 44..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G031140.1	CsGy1G031140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane