CsGy1G030728 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy1G030728
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionCell division protein ftsH
LocationGy14Chr1: 29213384 .. 29213781 (-)
RNA-Seq ExpressionCsGy1G030728
SyntenyCsGy1G030728
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAGACGAAGTGAAAAATGTCTTGGGTCTAGGATGAAAAAATCAAGAACAAACGAAGATAATCCAATCCTTCTCAATGATTATGAGGTATACTTAAGATTAGTTGTTATAATTTGTTACTTTGCGGATGTTTGATATGTAAATATATTTTAATTATATTGTATTCATCTATATCATAGGATGAAAAGATATCAAGTTCTCAAGAGACTTATGAAGAAAATCAAATGAATTACAAACCTACACAAACAGTGTACCCAGGTGATGATGAATATGATATAACAGGACCAAATAACACTCAAATTGTTCTGTACAATGAAAACTTAGCAAGTAAAAGAAAAATAAAGGTAGAAACGTCATTTCAGAAATTGGATGCACAAGGAACAGAGGTTAGTTAA

mRNA sequence

ATGGTAAGACGAAGTGAAAAATGTCTTGGGTCTAGGATGAAAAAATCAAGAACAAACGAAGATAATCCAATCCTTCTCAATGATTATGAGGATGAAAAGATATCAAGTTCTCAAGAGACTTATGAAGAAAATCAAATGAATTACAAACCTACACAAACAGTGTACCCAGGTGATGATGAATATGATATAACAGGACCAAATAACACTCAAATTGTTCTGTACAATGAAAACTTAGCAAGTAAAAGAAAAATAAAGGTAGAAACGTCATTTCAGAAATTGGATGCACAAGGAACAGAGGTTAGTTAA

Coding sequence (CDS)

ATGGTAAGACGAAGTGAAAAATGTCTTGGGTCTAGGATGAAAAAATCAAGAACAAACGAAGATAATCCAATCCTTCTCAATGATTATGAGGATGAAAAGATATCAAGTTCTCAAGAGACTTATGAAGAAAATCAAATGAATTACAAACCTACACAAACAGTGTACCCAGGTGATGATGAATATGATATAACAGGACCAAATAACACTCAAATTGTTCTGTACAATGAAAACTTAGCAAGTAAAAGAAAAATAAAGGTAGAAACGTCATTTCAGAAATTGGATGCACAAGGAACAGAGGTTAGTTAA

Protein sequence

MVRRSEKCLGSRMKKSRTNEDNPILLNDYEDEKISSSQETYEENQMNYKPTQTVYPGDDEYDITGPNNTQIVLYNENLASKRKIKVETSFQKLDAQGTEVS*
Homology
BLAST of CsGy1G030728 vs. NCBI nr
Match: TYK30586.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 5.47e-12
Identity = 39/96 (40.62%), Postives = 64/96 (66.67%), Query Frame = 0

Query: 1  MVRRSEKCLGSRMKKSRTNEDNPILLNDYEDEKISSSQETYEENQMNYKPTQTVYPGDDE 60
          MVRRSE+CLGSR+KK ++++DN IL+ D  +E I +      E  ++Y+P Q +YP DDE
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRN------EEPLDYQPIQIIYPKDDE 60

Query: 61 YDITGPNNTQIVLYNENLASKRKIKVETSFQKLDAQ 96
           ++ GP  TQIV+Y++    K+ ++ +  F+  +A+
Sbjct: 61 EELQGPTGTQIVVYDD----KKFMRTDMVFKTPEAK 86

BLAST of CsGy1G030728 vs. NCBI nr
Match: KAA0043162.1 (uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK12303.1 uncharacterized protein E5676_scaffold302G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 3.43e-11
Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = 0

Query: 1  MVRRSEKCLGSRMKKSRTNEDNPILLNDYEDEKISSSQETYEENQMNYKPTQTVYPGDDE 60
          MVRRSE+CLG ++K  ++N+D+PI++ D  +E++      YEE  + Y+P QT+Y  DDE
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVR-----YEEP-IQYEPLQTIYLDDDE 60

Query: 61 YDITGPNNTQIVLYNENLASKRKIKVETSFQKLDAQGTE 99
           ++ GP +T IV+Y      K  +  ET   K+     E
Sbjct: 61 QELRGPTDTLIVVYQNQKFVKTNVVFETPKAKMPKHNKE 93

BLAST of CsGy1G030728 vs. NCBI nr
Match: KAA0066916.1 (Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 5.83e-10
Identity = 38/93 (40.86%), Postives = 51/93 (54.84%), Query Frame = 0

Query: 1  MVRRSEKCLGSRMKKSRTNEDNPILLNDYEDEKISSSQETYEENQMNYKPTQTVYPGDDE 60
          MVR+S +CLGSRMK  ++N+D+PI++ND E                      TVY GDDE
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDTE-------------------VCGTVYKGDDE 60

Query: 61 YDITGPNNTQIVLYNENLASKRKIKVETSFQKL 93
          Y++ GP  TQI+LY E    K  +  ET   K+
Sbjct: 61 YELRGPTCTQIMLYEEKKYVKPDVVFETPKTKM 74

BLAST of CsGy1G030728 vs. NCBI nr
Match: KAA0035692.1 (Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 50.8 bits (120), Expect = 5.84e-05
Identity = 30/69 (43.48%), Postives = 40/69 (57.97%), Query Frame = 0

Query: 25 LLNDYEDEKISSSQETYEENQMNYKPTQTVYPGDDEYDITGPNNTQIVLYNENLASKRKI 84
          +++D EDE      E YEE  +NY+P Q VYP D E+++ GP  TQIVLY E    K  +
Sbjct: 1  MIDDIEDE------ERYEEA-INYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDV 60

Query: 85 KVETSFQKL 93
            ET   K+
Sbjct: 61 VFETPETKM 62

BLAST of CsGy1G030728 vs. NCBI nr
Match: TYK30853.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 49.3 bits (116), Expect = 3.36e-04
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 0

Query: 36  SSQETYEENQMNYKPTQTVYPGDDEYDITGPNNTQIVLYNENLASKRKIKVETSFQKL 93
           + +E YEE  +NY+P Q VYP D E+++ GP  TQIVLY E    K  +  ET   K+
Sbjct: 144 ADEERYEEA-INYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETPETKM 200

BLAST of CsGy1G030728 vs. ExPASy TrEMBL
Match: A0A0A0K6Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G146490 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.20e-21
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 0

Query: 46  MNYKPTQTVYPGDDEYDITGPNNTQIVLYNENLASKRKIKVETSFQKLDAQGTEVS 101
           M+YK  QTVYPG+DEYDITGPN+TQIVLY+ENLASKRKIKVE   QKLDAQ TE S
Sbjct: 1   MDYKHIQTVYPGEDEYDITGPNDTQIVLYDENLASKRKIKVEMPVQKLDAQETEKS 56

BLAST of CsGy1G030728 vs. ExPASy TrEMBL
Match: A0A5D3E3X1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00070 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.65e-12
Identity = 39/96 (40.62%), Postives = 64/96 (66.67%), Query Frame = 0

Query: 1  MVRRSEKCLGSRMKKSRTNEDNPILLNDYEDEKISSSQETYEENQMNYKPTQTVYPGDDE 60
          MVRRSE+CLGSR+KK ++++DN IL+ D  +E I +      E  ++Y+P Q +YP DDE
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRN------EEPLDYQPIQIIYPKDDE 60

Query: 61 YDITGPNNTQIVLYNENLASKRKIKVETSFQKLDAQ 96
           ++ GP  TQIV+Y++    K+ ++ +  F+  +A+
Sbjct: 61 EELQGPTGTQIVVYDD----KKFMRTDMVFKTPEAK 86

BLAST of CsGy1G030728 vs. ExPASy TrEMBL
Match: A0A5A7TIM3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00690 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.66e-11
Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = 0

Query: 1  MVRRSEKCLGSRMKKSRTNEDNPILLNDYEDEKISSSQETYEENQMNYKPTQTVYPGDDE 60
          MVRRSE+CLG ++K  ++N+D+PI++ D  +E++      YEE  + Y+P QT+Y  DDE
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVR-----YEEP-IQYEPLQTIYLDDDE 60

Query: 61 YDITGPNNTQIVLYNENLASKRKIKVETSFQKLDAQGTE 99
           ++ GP +T IV+Y      K  +  ET   K+     E
Sbjct: 61 QELRGPTDTLIVVYQNQKFVKTNVVFETPKAKMPKHNKE 93

BLAST of CsGy1G030728 vs. ExPASy TrEMBL
Match: A0A5A7VKG5 (Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00090 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.82e-10
Identity = 38/93 (40.86%), Postives = 51/93 (54.84%), Query Frame = 0

Query: 1  MVRRSEKCLGSRMKKSRTNEDNPILLNDYEDEKISSSQETYEENQMNYKPTQTVYPGDDE 60
          MVR+S +CLGSRMK  ++N+D+PI++ND E                      TVY GDDE
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDTE-------------------VCGTVYKGDDE 60

Query: 61 YDITGPNNTQIVLYNENLASKRKIKVETSFQKL 93
          Y++ GP  TQI+LY E    K  +  ET   K+
Sbjct: 61 YELRGPTCTQIMLYEEKKYVKPDVVFETPKTKM 74

BLAST of CsGy1G030728 vs. ExPASy TrEMBL
Match: A0A0A0K560 (Cell division protein ftsH OS=Cucumis sativus OX=3659 GN=Csa_7G154990 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.18e-05
Identity = 25/57 (43.86%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 46 MNYKPTQTVYPGDDEYDITGPNNTQIVLYNEN----------LASKRKIKVETSFQK 92
          M+++P QTVYPG+DEYD+ GP  TQIV+Y E           +A +R  K ++S +K
Sbjct: 1  MDFEPIQTVYPGEDEYDLRGPTGTQIVVYKERKDEPDVDNIPIAKRRLFKDKSSKEK 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
TYK30586.15.47e-1240.63protein Ycf2-like [Cucumis melo var. makuwa][more]
KAA0043162.13.43e-1138.38uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK1... [more]
KAA0066916.15.83e-1040.86Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division ... [more]
KAA0035692.15.84e-0543.48Cell division protein ftsH [Cucumis melo var. makuwa][more]
TYK30853.13.36e-0444.83retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A0A0K6Z82.20e-2180.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G146490 PE=4 SV=1[more]
A0A5D3E3X12.65e-1240.63Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00... [more]
A0A5A7TIM31.66e-1138.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VKG52.82e-1040.86Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A0A0K5602.18e-0543.86Cell division protein ftsH OS=Cucumis sativus OX=3659 GN=Csa_7G154990 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G030728.1CsGy1G030728.1mRNA