CsGy1G030250 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G030250
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr1: 28466138 .. 28466645 (+)
RNA-Seq Expression	CsGy1G030250
Synteny	CsGy1G030250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGGTTGAGAAAGATTGTGAGAGAGTGGAGTTGGGACCGAGTGGGGGCCTCCAATTCCCTCAGTGGAACCAATTATCGCCGGAAGTGGAAGCTGCAATGTCAAGCAAAAGTAAACCCCAAAACCCTCAAAAGCCAAACCCAAACCCAAAAGTCCCTTCAAAAATCCCTATCGCTCACCCACCCTCTTCCTTCTTCCTTTCACTAAAATTCTTCATAACTTGTTCCCACCAACAACCCCCCCAATCATCATCATCATCATCTTTCCTTTTCATTTTTCTCTCTATTTTCTCCCCTTTCATTCCACTCAAACCACCTCCTCCTCATGTAAGTCCCTCTTTATCTCTGTTTTTGTGAATCTTCTCGAGTTTTGGAGAATTTTTTGTGTGATTTCCAATGGGTTCTGTTTGTTTTCTTCAGGATGTTGAGTTTTTATTGGTTTTTCTTGTGATGAGTCCGTTTGTGATTGATCTATGGTTTTGTTGATTAGAAGGGAGGAGATTAA

mRNA sequence

ATGGCGATGGTTGAGAAAGATTGTGAGAGAGTGGAGTTGGGACCGAGTGGGGGCCTCCAATTCCCTCAGTGGAACCAATTATCGCCGGAAGTGGAAGCTGCAATGTCAAGCAAAAGTAAACCCCAAAACCCTCAAAAGCCAAACCCAAACCCAAAAGTCCCTTCAAAAATCCCTATCGCTCACCCACCCTCTTCCTTCTTCCTTTCACTAAAATTCTTCATAACTTGTTCCCACCAACAACCCCCCCAATCATCATCATCATCATCTTTCCTTTTCATTTTTCTCTCTATTTTCTCCCCTTTCATTCCACTCAAACCACCTCCTCCTCATGGAGGAGATTAA

Coding sequence (CDS)

ATGGCGATGGTTGAGAAAGATTGTGAGAGAGTGGAGTTGGGACCGAGTGGGGGCCTCCAATTCCCTCAGTGGAACCAATTATCGCCGGAAGTGGAAGCTGCAATGTCAAGCAAAAGTAAACCCCAAAACCCTCAAAAGCCAAACCCAAACCCAAAAGTCCCTTCAAAAATCCCTATCGCTCACCCACCCTCTTCCTTCTTCCTTTCACTAAAATTCTTCATAACTTGTTCCCACCAACAACCCCCCCAATCATCATCATCATCATCTTTCCTTTTCATTTTTCTCTCTATTTTCTCCCCTTTCATTCCACTCAAACCACCTCCTCCTCATGGAGGAGATTAA

Protein sequence

MAMVEKDCERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKIPIAHPPSSFFLSLKFFITCSHQQPPQSSSSSSFLFIFLSIFSPFIPLKPPPPHGGD*

Homology

[Close]

BLAST of CsGy1G030250 vs. NCBI nr
Match: KGN66543.1 (hypothetical protein Csa_007424 [Cucumis sativus])

HSP 1 Score: 230 bits (587), Expect = 3.45e-76
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MAMVEKDCERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKIPIA 60
           MAMVEKDCERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKIPIA
Sbjct: 1   MAMVEKDCERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKIPIA 60

Query: 61  HPPSSFFLSLKFFITCSHQQPPQSSSSSSFLFIFLSIFSPFIPLKPPPPHGGD 113
           HPPSSFFLSLKFFITCSHQQPPQSSSSSSFLFIFLSIFSPFIPLKPPPPHGGD
Sbjct: 61  HPPSSFFLSLKFFITCSHQQPPQSSSSSSFLFIFLSIFSPFIPLKPPPPHGGD 113

[Close]

BLAST of CsGy1G030250 vs. NCBI nr
Match: XP_022988095.1 (uncharacterized protein LOC111485445 isoform X1 [Cucurbita maxima])

HSP 1 Score: 59.7 bits (143), Expect = 1.43e-07
Identity = 42/75 (56.00%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 14 GPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKIPIAHPPSS---FFLSL 73
          G  G LQ  QWNQLSPEVE AMSSKSKP   QKPNP      KIPIAHPP +   F  +L
Sbjct: 14 GRVGRLQLLQWNQLSPEVEVAMSSKSKP---QKPNP------KIPIAHPPPTLLPFTKNL 73

Query: 74 KFFITCS---HQQPP 82
          + F T +   HQ  P
Sbjct: 74 QNFFTATTPNHQLSP 79

[Close]

BLAST of CsGy1G030250 vs. ExPASy TrEMBL
Match: A0A0A0LXS2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629000 PE=4 SV=1)

HSP 1 Score: 230 bits (587), Expect = 1.67e-76
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MAMVEKDCERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKIPIA 60
           MAMVEKDCERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKIPIA
Sbjct: 1   MAMVEKDCERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKIPIA 60

Query: 61  HPPSSFFLSLKFFITCSHQQPPQSSSSSSFLFIFLSIFSPFIPLKPPPPHGGD 113
           HPPSSFFLSLKFFITCSHQQPPQSSSSSSFLFIFLSIFSPFIPLKPPPPHGGD
Sbjct: 61  HPPSSFFLSLKFFITCSHQQPPQSSSSSSFLFIFLSIFSPFIPLKPPPPHGGD 113

[Close]

BLAST of CsGy1G030250 vs. ExPASy TrEMBL
Match: A0A6J1JIM8 (uncharacterized protein LOC111485445 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485445 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.91e-08
Identity = 42/75 (56.00%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 14 GPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKIPIAHPPSS---FFLSL 73
          G  G LQ  QWNQLSPEVE AMSSKSKP   QKPNP      KIPIAHPP +   F  +L
Sbjct: 14 GRVGRLQLLQWNQLSPEVEVAMSSKSKP---QKPNP------KIPIAHPPPTLLPFTKNL 73

Query: 74 KFFITCS---HQQPP 82
          + F T +   HQ  P
Sbjct: 74 QNFFTATTPNHQLSP 79

The following BLAST results are available for this feature:

BLAST of CsGy1G030250 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G030250 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66543.1	3.45e-76	100.00	hypothetical protein Csa_007424 [Cucumis sativus]	[more]
XP_022988095.1	1.43e-07	56.00	uncharacterized protein LOC111485445 isoform X1 [Cucurbita maxima]	[more]

BLAST of CsGy1G030250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXS2	1.67e-76	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629000 PE=4 SV=1	[more]
A0A6J1JIM8	6.91e-08	56.00	uncharacterized protein LOC111485445 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CsGy1G030250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G030250.2	CsGy1G030250.2	mRNA