CsGy1G029710 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G029710
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	chaperonin-like RbcX protein 2, chloroplastic
Location	Gy14Chr1: 27800465 .. 27804058 (+)
RNA-Seq Expression	CsGy1G029710
Synteny	CsGy1G029710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGAGCTTTATCTATGGTGGGTTCTTCAGTAGTGGATTCTCATAGCTCCCCTTGTTTGTGTTTGGATGCTTTGCCCACAACCAGCATCAATCTCAAAAGTTGTGGGGATTTTGTAATGAAAAAGAAATATTCAAAGGGTCGACAGCGTTTGCCGAAACCCAAGCACTTAGATCTAAGCAGCTCGTTTGTCGATAATGGCCGGGAGTGGCTGCTCTCGGTTGATATGATAAATAGGAGTTCGAGGAAGCAGACCAAAAATAGAAGACTTATGGTTGTTGATGAACTTGGGGGGCAGTATGAAGATAACTTTGATGATGTTAAAATGGTAAGAATGTGAATTTGGAATCGTTATTCATCTGTATGCTTAAGACTGAATTTAGATAGGTATTTAAGCACGTTTTGGTAGTTTATTGTGTTGCTGAAATGTATCTTACTGAATTTGGATAAGAAATCCTATGTAGCTTAATGAACGGTTTAACGGTTTAAGTCTGATTCAAAAGTGCTTTGACTCTGTGATGTGGTTCTAGCTTTGTGTAGTATTTAGAGCTATTTTCATGTTGATAAGACATACTTTTGGGTACTTTGGAGATTATAGTTCTTGGAAGGCTTCCTTTTAGACGACTTTACTTGAACTATAGGTTATACAACTGTATCCTTGAGTTCTAAGGAAGGCTTCCTTTTGGTTTTGCAATGATTTAGATTACAATTCATCTACGGTATGCAGCTTAGGAATTCACATGTCTTTCTAGTTCCTTGATTCTTTTTCTATGTTGATAGACATTAATGATATAAAACAACGCTACCATTATTGTCGTAATGAAGTATTTAGATGCAGATGGGGCTCTCAGCATAGGAAAATTGTGGGTATCCTTTCTTCCAAATGATCATGCGAAGATTTGGTAGGGAGCTGAGAAAGTTGGCCTTTCTACTAATACTTTAAAGGCATGCTAGACTCTAGAGTAACAGCACTAGCACATGTTCTCTTGCTTGCTAGTGCTTTCAAAAATTGGAGGGCATTCATTATTGACTTTAGTAAGCTAGCTAGAAATAACTTCTTGGATGCTGTGGACTTGGTTGACCATAACTAATTGTATTAGAGTCAAAATTCCGGTTACACCATGGTTAAGAGGAGTTTCTGTCTTATGTAATATTGGGGACTGTATTAACATAAATACAACATAAAGAAGTAATGCAAAATCAAAAATTGTAAACTGCAAAAAATTGTCCCACACTTATACTTCCACATAATCACTATACGAAAGGACCTATTACTAGAATAGCTTTCAATACATAAATTACGATTTTGACTGCTGAACAACCAATATAGTTCCAAGCTAAGGAATTGGAATAGAAAGTTACATTGGTCGATACAGCAATAATCACAATTGTTACTTAAGTCGACTCACGAGGCTTTTCAAAGCCACCAGTATGATACACATACAATGCAAAAACCAACAGGTTGATGCCAAACGCAACTGAAAATGTTCTTTTTATACTTACGAGATATGCTTGAGACTTAATCTTTTCATTAAGTTTGTTATACTTATAGTCAGGTCCTGCATTTTCAAATTGTTGGTTGATACTTCTTTTTAGTTTGATTTTAATGATTTTCCAGTTTCTTGAGCGTTATCTTCTCCCATCCTTTGCTAATTCATTTGCCTATGAATTAATTAGTGAACTGACTGAAATTTCTCTGGCCCAGCAAATGCTTAATTATTTTACATACAAAGCTGTGAGGACTGTTATGAACCAGCTGTATGAAATGAACCCCCCACAGTACAGGTGGCTTTACGAGTACGTGCTATCTTTTGTTGCACTCTGAGACCTGCTTTTTTTGTTATTTTTTTTCACTGGAGTTTGTTTAATATGCTGGTTTCGATATAGATGCATGAAATAGTTGCAGTATTTTATATCGTGCAAGATCAAGTTTGGCTGTTAAACTATTTCTTGTTAGAATGGATTTGGTCTTAAATTTTGATTCATATGTTTTCTTATTCACAGTTTCGTGTTAAACAACAAGCCAACAGATGGAAAGCATTTCATCCGCAGGCTTGTAAAGGTACTTCTTAAAATTCATACCTACTTCATGACTTGGATACTTTTTTTGTGACAAACAAGTAACCTTCATTCATTAATGAGAGAAATTACAAAAGAGGCTCAAGTGATCATAAGAATCATAAAAAAAAGAATTGCCAATGAATGAAAAGAGAAGTTAGGCGTGTTAGTAAAGGAGTTTAAATCTTTAGCTTTTTCCTTGAAGATGCAGATGGTTTTTCTTGAGCGATGATAACCAAAGGATGGCTTCGTTGTGAGAGATCCATAGACCTCTTTACTCTTTACTAATGTATGACTTGGATGCTAATTAGTTGTACAGAGAAGCAAAACTTGTCTAATTGATGCTTCACATATGTTTTTCGCTATTGATTTTAGGGCATGCTATATTTTGGATTGATAGTTGAATAAAGGCATGCTTTAGAATGATTTTGAGTGCAGCATTAGTGATTTTAACCATTTCAAGAGGCTTACTATAACTTGTTCCCAAAGTTCTTATGGTTACCTTTTTAGCATTTGGCTATTAGTAGAAAAGAAAGGCCTGCCATAGCACAAAGATGTTACAAAATATGATACGTTTCAATATGATTGTTAGATTGTGTACCAGTCTCTATGCTTTAACTTCTAGTTTAGTCTACAAGTTTCATTATAGTCTATCTATTGATTAAACCTACTACTAAGTAACATGAAATGCACCATGTACATAAACATTCTCTAATAAGTGGAAAAATAGCTGTTCTAAGTATGTATAAAGCTCCATCATTTGTTGACAAATTAGAAGTAGGAAAAAGAGCTAAAGTCAAAGATTTGTTTATAGGATGGAGGTTTAGTATGTGAAAAATGAATGCATATTGGAGTGAGAAAAAACTGTGAACCTCAAAATTGCATGCCAAGTTACACGAAGGCCTATGCCTAATTGAAGCCATTTTGCTTGACAATAAGTCAGCTTAAATACACAACTAAAATATTTTCTTTTACTTCAAAATCCCAAATATTCCAGTTTAAATTTAGGGCATCAAGGTTTAAGGTCATTTACGGTGCGGTAGATGTGGGATGGTTGGCTACACCCACAAAACTTGTGTTTAACCACTATTGACAACGAATTGAAAGCATGCACCAGCTTAAATACACAACTAAAATGATTTCTTTTACTTATGGATTCCACACATTCCAGCTGTAAAATAGCGTTTTACTTCACCTGAATCATTGTTTTCCTAATTGACAGGAACAGCAAGATCTTGCTGAAAGAGTAATGATCACACGTCTCCACCTCTATGGAAAATGGGTGAAGGTATTGTTATCATTATAGTATTTCTTTCCTTTCAATACTATATGTTCTTTTAATTATAGGAAGACCAGTATTTATATACATGGAAACAAAAGCTTGCAAAAATTTATTTCTTCTGTGGTGTAGAAATGTAACCACGCCGAAATATACCAAGAGATCTCGGATGAAAACGTGGAATTAATGCGAGAACGACTTATGCAGACTGTTATATGGCCTTCAGATGACACAAACACAGAGAAGATTGGCTAA

mRNA sequence

ATGGTGGGAGCTTTATCTATGGTGGGTTCTTCAGTAGTGGATTCTCATAGCTCCCCTTGTTTGTGTTTGGATGCTTTGCCCACAACCAGCATCAATCTCAAAAGTTGTGGGGATTTTGTAATGAAAAAGAAATATTCAAAGGGTCGACAGCGTTTGCCGAAACCCAAGCACTTAGATCTAAGCAGCTCGTTTGTCGATAATGGCCGGGAGTGGCTGCTCTCGGTTGATATGATAAATAGGAGTTCGAGGAAGCAGACCAAAAATAGAAGACTTATGGTTGTTGATGAACTTGGGGGGCAGTATGAAGATAACTTTGATGATGTTAAAATGCAAATGCTTAATTATTTTACATACAAAGCTGTGAGGACTGTTATGAACCAGCTGTATGAAATGAACCCCCCACAGTACAGGTGGCTTTACGATTTCGTGTTAAACAACAAGCCAACAGATGGAAAGCATTTCATCCGCAGGCTTGTAAAGGAACAGCAAGATCTTGCTGAAAGAGTAATGATCACACGTCTCCACCTCTATGGAAAATGGGTGAAGAAATGTAACCACGCCGAAATATACCAAGAGATCTCGGATGAAAACGTGGAATTAATGCGAGAACGACTTATGCAGACTGTTATATGGCCTTCAGATGACACAAACACAGAGAAGATTGGCTAA

Coding sequence (CDS)

ATGGTGGGAGCTTTATCTATGGTGGGTTCTTCAGTAGTGGATTCTCATAGCTCCCCTTGTTTGTGTTTGGATGCTTTGCCCACAACCAGCATCAATCTCAAAAGTTGTGGGGATTTTGTAATGAAAAAGAAATATTCAAAGGGTCGACAGCGTTTGCCGAAACCCAAGCACTTAGATCTAAGCAGCTCGTTTGTCGATAATGGCCGGGAGTGGCTGCTCTCGGTTGATATGATAAATAGGAGTTCGAGGAAGCAGACCAAAAATAGAAGACTTATGGTTGTTGATGAACTTGGGGGGCAGTATGAAGATAACTTTGATGATGTTAAAATGCAAATGCTTAATTATTTTACATACAAAGCTGTGAGGACTGTTATGAACCAGCTGTATGAAATGAACCCCCCACAGTACAGGTGGCTTTACGATTTCGTGTTAAACAACAAGCCAACAGATGGAAAGCATTTCATCCGCAGGCTTGTAAAGGAACAGCAAGATCTTGCTGAAAGAGTAATGATCACACGTCTCCACCTCTATGGAAAATGGGTGAAGAAATGTAACCACGCCGAAATATACCAAGAGATCTCGGATGAAAACGTGGAATTAATGCGAGAACGACTTATGCAGACTGTTATATGGCCTTCAGATGACACAAACACAGAGAAGATTGGCTAA

Protein sequence

MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDLSSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKAVRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG*

Homology

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BLAST of CsGy1G029710 vs. ExPASy Swiss-Prot
Match: Q8L9X2 (Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX2 PE=1 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 6.9e-63
Identity = 122/218 (55.96%), Postives = 159/218 (72.94%), Query Frame = 0


Query: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60
           MV A  +VGS V+DS SSPCLCLDA  T +I  K                 L K ++L+L
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDAHTTGTIRRKKI---------------LGKARNLEL 60

Query: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA 120
            SSF  +   + LS   ++R + +++K + L+V +++ G Y+D F DV+ Q++NYFTYKA
Sbjct: 61  GSSFTGSRIVFRLSPKRVSRIANRKSK-KLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180
           VRTV++QLYEMNPPQY W Y+ ++ N+PTDGK F+R L KE Q+LAERVMITRLHLYGKW
Sbjct: 121 VRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNT 219
           +KKC+H +IYQEISDEN+ LMRERLM+TVIWPSDDTN+
Sbjct: 181 IKKCDHGKIYQEISDENLALMRERLMETVIWPSDDTNS 202

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BLAST of CsGy1G029710 vs. ExPASy Swiss-Prot
Match: Q8DIS6 (RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rbcX PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.4e-09
Identity = 33/105 (31.43%), Postives = 52/105 (49.52%), Query Frame = 0


Query: 112 MLNYFTYKAVRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMI 171
           +++Y TY+AVRTV+ QL E +PP+  WL+ F       DG+ ++  L +EQ DL  R++ 
Sbjct: 14  LISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQPDLGFRILT 73

Query: 172 TRLHL-----------------YGKWVKKCNHAEIYQEISDENVE 200
            R HL                      ++C   E   ++S+ NVE
Sbjct: 74  VREHLAEMVADYLPEMLRAGIQQANLQQRCQQLERMTQVSEANVE 118

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BLAST of CsGy1G029710 vs. ExPASy Swiss-Prot
Match: O86418 (RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbcX PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.4e-08
Identity = 35/99 (35.35%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 107 DVKMQMLNYFTYKAVRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLA 166
           D    + +Y TY+A+ TV+ QL E NPP   WL+ F +  K  DG+ +++ L +EQ DLA
Sbjct: 9   DTAKTLQSYLTYQALMTVLAQLGETNPPLALWLHTFSV-GKVQDGEAYVKELFREQPDLA 68

Query: 167 ERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERL 206
            R+M  R H+  + V +     +   I   N+E  R+ L
Sbjct: 69  LRIMTVREHI-AEEVAEFLPEMVRSGIQQANMEQRRQHL 105

[Close]

BLAST of CsGy1G029710 vs. ExPASy Swiss-Prot
Match: Q44212 (RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-07
Identity = 35/99 (35.35%), Postives = 53/99 (53.54%), Query Frame = 0


Query: 107 DVKMQMLNYFTYKAVRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLA 166
           D    + +Y TY+A+RTV+ QL E NPP   WL++F    K  DG+ +I  L  E+ DLA
Sbjct: 9   DTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSA-GKVQDGEKYIEELFLEKPDLA 68

Query: 167 ERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERL 206
            R+M  R H+  + + +     +   I   N+E  R+ L
Sbjct: 69  LRIMTVREHI-AEEIAEFLPEMVVTGIQQANMEKRRQHL 105

[Close]

BLAST of CsGy1G029710 vs. ExPASy Swiss-Prot
Match: Q55670 (RuBisCO chaperone RbcX OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rbcX PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 8.6e-05
Identity = 32/113 (28.32%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 114 NYFTYKAVRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITR 173
           +Y TY+AV  + ++L E NPPQ  WL  ++ ++   +G+ F+  L+ E ++L  R++  R
Sbjct: 18  SYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDENKELVLRILAVR 77

Query: 174 LHLYGKWVKKCNHAEIYQEISDENVELMR---ERLMQTVI----WPSDDTNTE 220
             +  + V           +++ N+   R   ERL +TV     +PS+ +N E
Sbjct: 78  EDI-AESVLDFLPGMTRNSLAESNIAHRRHLLERLTRTVAEVDNFPSETSNGE 129

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BLAST of CsGy1G029710 vs. NCBI nr
Match: XP_004139034.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucumis sativus] >KGN66488.1 hypothetical protein Csa_007379 [Cucumis sativus])

HSP 1 Score: 456 bits (1174), Expect = 3.98e-162
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60
           MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA 120
           SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA
Sbjct: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
           VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

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BLAST of CsGy1G029710 vs. NCBI nr
Match: XP_008450421.1 (PREDICTED: uncharacterized protein LOC103492031 [Cucumis melo] >TYK18852.1 RcbX domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 449 bits (1154), Expect = 4.46e-159
Identity = 218/222 (98.20%), Postives = 220/222 (99.10%), Query Frame = 0


Query: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60
           MVGALSMVGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVMKKKYS GRQRLPKPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKYSMGRQRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA 120
           SSSFVDNG EWLLSVDMINRSSRKQTKNRRL+VVDELGGQYEDNFDDVKMQMLNYFTYKA
Sbjct: 61  SSSFVDNGLEWLLSVDMINRSSRKQTKNRRLVVVDELGGQYEDNFDDVKMQMLNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
           VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of CsGy1G029710 vs. NCBI nr
Match: XP_038879928.1 (chaperonin-like RbcX protein 2, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 429 bits (1103), Expect = 2.67e-151
Identity = 209/222 (94.14%), Postives = 215/222 (96.85%), Query Frame = 0


Query: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60
           MVGALS+VGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVMKKK   GR RLPK KHLDL
Sbjct: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKNLMGRNRLPKSKHLDL 60

Query: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA 120
           SSSFVDNGREWLLS DMINRSSRKQ KNRRL+VVDELGGQYEDNFDDVKMQ+LNYFTYKA
Sbjct: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKMQILNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPPQYRWLYDFVL+NKPTDGK+FIRRLVKEQQDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKYFIRRLVKEQQDLAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
           VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of CsGy1G029710 vs. NCBI nr
Match: XP_038879929.1 (chaperonin-like RbcX protein 2, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 411 bits (1056), Expect = 3.38e-144
Identity = 204/222 (91.89%), Postives = 210/222 (94.59%), Query Frame = 0


Query: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60
           MVGALS+VGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVMKKK   GR RLPK KHLDL
Sbjct: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKNLMGRNRLPKSKHLDL 60

Query: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA 120
           SSSFVDNGREWLLS DMINRSSRKQ KNRRL+VVDELGGQYEDNFDDVKMQ+LNYFTYKA
Sbjct: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKMQILNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPPQ    Y FVL+NKPTDGK+FIRRLVKEQQDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQ----YSFVLSNKPTDGKYFIRRLVKEQQDLAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
           VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 218

[Close]

BLAST of CsGy1G029710 vs. NCBI nr
Match: XP_022968239.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 405 bits (1042), Expect = 5.12e-142
Identity = 198/222 (89.19%), Postives = 210/222 (94.59%), Query Frame = 0


Query: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60
           MV  LS+VGSSVVDSH+SPCLCLD LPTTSINLKS GDFVMKK +S GR+RLPKPKHLDL
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDILPTTSINLKSSGDFVMKK-HSMGRKRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA 120
           SSSFVD GREWLLS DMINRSSRKQ KNRRL+V+DELGGQYED FDDVKMQ+LNYFTYKA
Sbjct: 61  SSSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPP YRWLYDFVL+NKP+DGKHFIR LVKE+QDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
           VKKCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEKIG
Sbjct: 181 VKKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of CsGy1G029710 vs. ExPASy TrEMBL
Match: A0A0A0LXJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613600 PE=4 SV=1)

HSP 1 Score: 456 bits (1174), Expect = 1.93e-162
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60
           MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA 120
           SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA
Sbjct: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
           VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of CsGy1G029710 vs. ExPASy TrEMBL
Match: A0A5D3D5P8 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00500 PE=4 SV=1)

HSP 1 Score: 449 bits (1154), Expect = 2.16e-159
Identity = 218/222 (98.20%), Postives = 220/222 (99.10%), Query Frame = 0


Query: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60
           MVGALSMVGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVMKKKYS GRQRLPKPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKYSMGRQRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA 120
           SSSFVDNG EWLLSVDMINRSSRKQTKNRRL+VVDELGGQYEDNFDDVKMQMLNYFTYKA
Sbjct: 61  SSSFVDNGLEWLLSVDMINRSSRKQTKNRRLVVVDELGGQYEDNFDDVKMQMLNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
           VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of CsGy1G029710 vs. ExPASy TrEMBL
Match: A0A1S3BNK3 (uncharacterized protein LOC103492031 OS=Cucumis melo OX=3656 GN=LOC103492031 PE=4 SV=1)

HSP 1 Score: 449 bits (1154), Expect = 2.16e-159
Identity = 218/222 (98.20%), Postives = 220/222 (99.10%), Query Frame = 0


Query: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60
           MVGALSMVGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVMKKKYS GRQRLPKPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKYSMGRQRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA 120
           SSSFVDNG EWLLSVDMINRSSRKQTKNRRL+VVDELGGQYEDNFDDVKMQMLNYFTYKA
Sbjct: 61  SSSFVDNGLEWLLSVDMINRSSRKQTKNRRLVVVDELGGQYEDNFDDVKMQMLNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
           VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of CsGy1G029710 vs. ExPASy TrEMBL
Match: A0A6J1HZ31 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467533 PE=4 SV=1)

HSP 1 Score: 405 bits (1042), Expect = 2.48e-142
Identity = 198/222 (89.19%), Postives = 210/222 (94.59%), Query Frame = 0


Query: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60
           MV  LS+VGSSVVDSH+SPCLCLD LPTTSINLKS GDFVMKK +S GR+RLPKPKHLDL
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDILPTTSINLKSSGDFVMKK-HSMGRKRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA 120
           SSSFVD GREWLLS DMINRSSRKQ KNRRL+V+DELGGQYED FDDVKMQ+LNYFTYKA
Sbjct: 61  SSSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPP YRWLYDFVL+NKP+DGKHFIR LVKE+QDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
           VKKCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEKIG
Sbjct: 181 VKKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of CsGy1G029710 vs. ExPASy TrEMBL
Match: A0A6J1EJF5 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433858 PE=4 SV=1)

HSP 1 Score: 404 bits (1037), Expect = 1.43e-141
Identity = 197/222 (88.74%), Postives = 209/222 (94.14%), Query Frame = 0


Query: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60
           MV  LS+VGSSVVDSH+SPCLCLD LPTTSINLKS GDFVMK+  S GR+RLPKPKHLDL
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRN-SMGRKRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA 120
           SSSFVD GREWLLS DMINRSSRKQ KNRRL+V+DELGGQYED FDDVKMQ+LNYFTYKA
Sbjct: 61  SSSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPP YRWLYDFVL+NKP+DGKHFIR LVKE+QDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222
           VKKCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEKIG
Sbjct: 181 VKKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of CsGy1G029710 vs. TAIR 10
Match: AT5G19855.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 241.9 bits (616), Expect = 4.9e-64
Identity = 122/218 (55.96%), Postives = 159/218 (72.94%), Query Frame = 0


Query: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60
           MV A  +VGS V+DS SSPCLCLDA  T +I  K                 L K ++L+L
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDAHTTGTIRRKKI---------------LGKARNLEL 60

Query: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKMQMLNYFTYKA 120
            SSF  +   + LS   ++R + +++K + L+V +++ G Y+D F DV+ Q++NYFTYKA
Sbjct: 61  GSSFTGSRIVFRLSPKRVSRIANRKSK-KLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180
           VRTV++QLYEMNPPQY W Y+ ++ N+PTDGK F+R L KE Q+LAERVMITRLHLYGKW
Sbjct: 121 VRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNT 219
           +KKC+H +IYQEISDEN+ LMRERLM+TVIWPSDDTN+
Sbjct: 181 IKKCDHGKIYQEISDENLALMRERLMETVIWPSDDTNS 202

The following BLAST results are available for this feature:

BLAST of CsGy1G029710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9X2	6.9e-63	55.96	Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q8DIS6	4.4e-09	31.43	RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 ...	[more]
O86418	6.4e-08	35.35	RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) O...	[more]
Q44212	1.4e-07	35.35	RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX...	[more]
Q55670	8.6e-05	28.32	RuBisCO chaperone RbcX OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111170...	[more]

BLAST of CsGy1G029710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139034.1	3.98e-162	100.00	chaperonin-like RbcX protein 2, chloroplastic [Cucumis sativus] >KGN66488.1 hypo...	[more]
XP_008450421.1	4.46e-159	98.20	PREDICTED: uncharacterized protein LOC103492031 [Cucumis melo] >TYK18852.1 RcbX ...	[more]
XP_038879928.1	2.67e-151	94.14	chaperonin-like RbcX protein 2, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_038879929.1	3.38e-144	91.89	chaperonin-like RbcX protein 2, chloroplastic isoform X2 [Benincasa hispida]	[more]
XP_022968239.1	5.12e-142	89.19	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita maxima]	[more]

BLAST of CsGy1G029710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXJ9	1.93e-162	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613600 PE=4 SV=1	[more]
A0A5D3D5P8	2.16e-159	98.20	RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3BNK3	2.16e-159	98.20	uncharacterized protein LOC103492031 OS=Cucumis melo OX=3656 GN=LOC103492031 PE=...	[more]
A0A6J1HZ31	2.48e-142	89.19	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1EJF5	1.43e-141	88.74	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of CsGy1G029710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19855.1	4.9e-64	55.96	Chaperonin-like RbcX protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038052	Chaperonin-like RbcX superfamily	GENE3D	1.10.1200.210		coord: 94..219 e-value: 2.0E-49 score: 168.6
IPR038052	Chaperonin-like RbcX superfamily	SUPERFAMILY	158615	RbcX-like	coord: 100..219
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 111..208 e-value: 4.4E-20 score: 72.0
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 1..222
None	No IPR available	PANTHER	PTHR33791:SF1	CHAPERONIN-LIKE RBCX PROTEIN 2, CHLOROPLASTIC	coord: 1..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G029710.1	CsGy1G029710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006457	protein folding
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
molecular_function	GO:0044183	protein folding chaperone