CsGy1G027660 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G027660
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RING-type E3 ubiquitin transferase
Location	Gy14Chr1: 26081658 .. 26082615 (-)
RNA-Seq Expression	CsGy1G027660
Synteny	CsGy1G027660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTGTCCTGATTGTACTCAGTTTTGTCTTCATTCTTTGAAAGCTTTACATTTTATCTACTTCAATGAATTAAACCTCTCAACAGCAAATAAAAATTCTTCCATCTTTGACTCTCAAAACATCATCTTATTATCAATTCAATCAATTATGCTAATTCTTCTTCTTCTTCCTAAAAATACCCACAAAATCCTCTGTTAATTTCAGAATCCAAAAATGAGCGATTCTTCTACTTCTACTTCTACCCCTCATCCTGCAAAATCAAGCTTACCCATGTTGTATTATGGCCTTGTCGTTGTCGGAACGGCGGCGATTGTCTTAGTTCTCTACAATTTCATCGTTATCAAGTGGTGCTCAGACAACCGCCACCGCCGTCGGATGGCTGGAAGTTACGAGGAGATGATGAATTCAAGCCGTAGCTTCCAGAGCTCCTTGAGCAGCTTCAAATTCAAGAAGGTGGCGGGGGCGGGGGCGGAAGAAGGGAATGGGAATGAATGTGCAGTTTGTTTGTCAGCGTTTGAGGATGGTGAAGAGGTTAAGAAATTGCCGAGATGTACACATACGTTTCATGCTTCTTGTATAGATATGTGGCTTTATTCTCACTCCGATTGCCCACTCTGCCGTGCTCCGGTGGCGGGGCTGAGCCGACACGAAGCCACCGCGGAGCAAGAGGAGAATTCAGGTCATGTGTTGTTGGAGGTTTGAAACCGAAGATGTTCATAATAACTTTGAAATAGGTGGTTGGATTTGGAAAATTCTGATTCTTTTGTTTGTGATGTTTGTTTGTTGGGTGGTTCAAAGGATGAGGATAATGAAGAATTTGTAAAAGAGTTGGTAGGTGTTTTAGATGGGGTGTAGTTATTAAGTAGGGACCCATTTCGAACATTTGAGAAAGACTACACCCCAATCACAATTTCATGTAATGATATATTATATTTAGTTCTTGCTAATAAGGTTGAAT

mRNA sequence

CTCTGTCCTGATTGTACTCAGTTTTGTCTTCATTCTTTGAAAGCTTTACATTTTATCTACTTCAATGAATTAAACCTCTCAACAGCAAATAAAAATTCTTCCATCTTTGACTCTCAAAACATCATCTTATTATCAATTCAATCAATTATGCTAATTCTTCTTCTTCTTCCTAAAAATACCCACAAAATCCTCTGTTAATTTCAGAATCCAAAAATGAGCGATTCTTCTACTTCTACTTCTACCCCTCATCCTGCAAAATCAAGCTTACCCATGTTGTATTATGGCCTTGTCGTTGTCGGAACGGCGGCGATTGTCTTAGTTCTCTACAATTTCATCGTTATCAAGTGGTGCTCAGACAACCGCCACCGCCGTCGGATGGCTGGAAGTTACGAGGAGATGATGAATTCAAGCCGTAGCTTCCAGAGCTCCTTGAGCAGCTTCAAATTCAAGAAGGTGGCGGGGGCGGGGGCGGAAGAAGGGAATGGGAATGAATGTGCAGTTTGTTTGTCAGCGTTTGAGGATGGTGAAGAGGTTAAGAAATTGCCGAGATGTACACATACGTTTCATGCTTCTTGTATAGATATGTGGCTTTATTCTCACTCCGATTGCCCACTCTGCCGTGCTCCGGTGGCGGGGCTGAGCCGACACGAAGCCACCGCGGAGCAAGAGGAGAATTCAGGTCATGTGTTGTTGGAGGTTTGAAACCGAAGATGTTCATAATAACTTTGAAATAGGTGGTTGGATTTGGAAAATTCTGATTCTTTTGTTTGTGATGTTTGTTTGTTGGGTGGTTCAAAGGATGAGGATAATGAAGAATTTGTAAAAGAGTTGGTAGGTGTTTTAGATGGGGTGTAGTTATTAAGTAGGGACCCATTTCGAACATTTGAGAAAGACTACACCCCAATCACAATTTCATGTAATGATATATTATATTTAGTTCTTGCTAATAAGGTTGAAT

Coding sequence (CDS)

ATGAGCGATTCTTCTACTTCTACTTCTACCCCTCATCCTGCAAAATCAAGCTTACCCATGTTGTATTATGGCCTTGTCGTTGTCGGAACGGCGGCGATTGTCTTAGTTCTCTACAATTTCATCGTTATCAAGTGGTGCTCAGACAACCGCCACCGCCGTCGGATGGCTGGAAGTTACGAGGAGATGATGAATTCAAGCCGTAGCTTCCAGAGCTCCTTGAGCAGCTTCAAATTCAAGAAGGTGGCGGGGGCGGGGGCGGAAGAAGGGAATGGGAATGAATGTGCAGTTTGTTTGTCAGCGTTTGAGGATGGTGAAGAGGTTAAGAAATTGCCGAGATGTACACATACGTTTCATGCTTCTTGTATAGATATGTGGCTTTATTCTCACTCCGATTGCCCACTCTGCCGTGCTCCGGTGGCGGGGCTGAGCCGACACGAAGCCACCGCGGAGCAAGAGGAGAATTCAGGTCATGTGTTGTTGGAGGTTTGA

Protein sequence

MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYEEMMNSSRSFQSSLSSFKFKKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHASCIDMWLYSHSDCPLCRAPVAGLSRHEATAEQEENSGHVLLEV*

Homology

[Close]

BLAST of CsGy1G027660 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.5e-18
Identity = 61/182 (33.52%), Postives = 90/182 (49.45%), Query Frame = 0


Query: 1   MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE 60
           + D S+S+S      SS   L   L+ + T+A++LV Y  ++ K+C    HR     S  
Sbjct: 43  LDDDSSSSS------SSFSPLLIALIGILTSALILVSYYTLISKYC----HRHHQTSS-S 102

Query: 61  EMMNSSRSFQSSLSSFKFKKVAGAGAEEG-----------------NGNECAVCLSAFED 120
           E +N + + +   SS +     G G  E                  +G++C+VCLS FE+
Sbjct: 103 ETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEE 162

Query: 121 GEEVKKLPRCTHTFHASCIDMWLYSHSDCPLCRAPVAGLSRHEATAEQ--------EENS 158
            E ++ LP+C H FH  CID WL SHS+CPLCRA V G++   A+  Q        + NS
Sbjct: 163 NESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQSNS 213

[Close]

BLAST of CsGy1G027660 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-16
Identity = 62/180 (34.44%), Postives = 86/180 (47.78%), Query Frame = 0


Query: 4   SSTSTSTPHPAKSS----LPMLYYGLVVVGTAAIVLVLYNFIVIKWCSD------NRHRR 63
           S+T TS   P  SS     P+L   ++ +   A +LV Y   VIK C +       R RR
Sbjct: 23  STTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRR 82

Query: 64  RMAGSYEEMMNSSRSFQSSLSS--------FKFKK---VAGAGAEEGNGNECAVCLSAFE 123
           R +     M+ S       L          FKFKK   VAG   +  N  EC+VCL+ F+
Sbjct: 83  RSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQ 142

Query: 124 DGEEVKKLPRCTHTFHASCIDMWLYSHSDCPLCRAPVA-----GLSRHEATAEQEENSGH 158
           + E+++ +P C H FH  CID+WL  +++CPLCR  V+      L    A +   ENS H
Sbjct: 143 EDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSSPRENSPH 202

[Close]

BLAST of CsGy1G027660 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-15
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 79  KKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHASCIDMWLYSHSDCPLCR-- 138
           +  +GA AEEG+  ECA+CL+ F DGEE++ LP C H+FH  CID WL S S CP CR  
Sbjct: 87  ESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRI 146

Query: 139 -APV-AGLSRHEATAEQEENS 156
             PV      H +TAE ++ +
Sbjct: 147 LTPVRCDRCGHASTAEMKDQA 167

[Close]

BLAST of CsGy1G027660 vs. ExPASy Swiss-Prot
Match: Q8L9T5 (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-15
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 93  ECAVCLSAFEDGEEVKKLPRCTHTFHASCIDMWLYSHSDCPLCRAPVAGLSRHEATAEQE 152
           ECAVCLS FE+ E  + LP C HTFH  CIDMW +SHS CPLCR+ V  L+  E+TA   
Sbjct: 118 ECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAR 177

Query: 153 E 154
           E
Sbjct: 178 E 178

[Close]

BLAST of CsGy1G027660 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 67  RSFQSSLSSFKFKKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHASCIDMWL 126
           RS  +S++   FKK  G      +G EC+VCL+ FE+ E ++ LP+C+H FH +CID WL
Sbjct: 112 RSAINSITVVGFKKGEGI----IDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWL 171

Query: 127 YSHSDCPLCRAPV 140
            SH +CPLCRAPV
Sbjct: 172 LSHKNCPLCRAPV 180

[Close]

BLAST of CsGy1G027660 vs. NCBI nr
Match: XP_004144121.1 (RING-H2 finger protein ATL39 [Cucumis sativus] >KGN66278.1 hypothetical protein Csa_007702 [Cucumis sativus])

HSP 1 Score: 317 bits (812), Expect = 7.45e-109
Identity = 161/166 (96.99%), Postives = 161/166 (96.99%), Query Frame = 0


Query: 1   MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE 60
           MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE
Sbjct: 1   MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE 60

Query: 61  EMMNSSRSFQSSLSSFKFKKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHAS 120
           EMMNSSRSFQSSLSSFKFKKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHAS
Sbjct: 61  EMMNSSRSFQSSLSSFKFKKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHAS 120

Query: 121 CIDMWLYSHSDCPLCRAPVA----GLSRHEATAEQEENSGHVLLEV 162
           CIDMWLYSHSDCPLCRAPVA    G SRHEATAEQEENSGHVLLEV
Sbjct: 121 CIDMWLYSHSDCPLCRAPVAVAVAGRSRHEATAEQEENSGHVLLEV 166

[Close]

BLAST of CsGy1G027660 vs. NCBI nr
Match: XP_008450904.1 (PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo] >KAA0055794.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa] >TYK10045.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa])

HSP 1 Score: 288 bits (736), Expect = 2.79e-97
Identity = 153/167 (91.62%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE 60
           MSDSSTST  PHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSD+RHRRRMA SYE
Sbjct: 1   MSDSSTST--PHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDSRHRRRMAVSYE 60

Query: 61  EMMNSSRSFQSSLSSFKFKKVAGAGA--EEGNGNECAVCLSAFEDGEEVKKLPRCTHTFH 120
           EMMNSSRSFQSSLSSFKFKKVA A A  EEGNGNECAVCLSAFEDGEEVKKLPRCTHTFH
Sbjct: 61  EMMNSSRSFQSSLSSFKFKKVAAATATAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFH 120

Query: 121 ASCIDMWLYSHSDCPLCRAPVA--GLSRHEAT-AEQEENSGHVLLEV 162
           ASCIDMWLYSHSDCPLCRAPVA  G+SRHE T AEQ+ENSGHVLLEV
Sbjct: 121 ASCIDMWLYSHSDCPLCRAPVAVPGVSRHETTTAEQDENSGHVLLEV 165

[Close]

BLAST of CsGy1G027660 vs. NCBI nr
Match: XP_038879803.1 (RING-H2 finger protein ATL39-like [Benincasa hispida])

HSP 1 Score: 261 bits (666), Expect = 2.02e-86
Identity = 139/173 (80.35%), Postives = 147/173 (84.97%), Query Frame = 0


Query: 1   MSDSSTST---STPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRR--- 60
           MSDSS+++    TPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRR    
Sbjct: 1   MSDSSSTSFAQPTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRASPA 60

Query: 61  MAGSYEEMMNSSRSFQSSLSSFKFKK----VAGAGAEEGNGNECAVCLSAFEDGEEVKKL 120
           +AGSY EMMNSSRSF SSL SFKFKK     A A  EEG GNECAVCLSAFEDG+EVKKL
Sbjct: 61  LAGSYAEMMNSSRSFHSSLCSFKFKKGSTVAAAAAEEEGYGNECAVCLSAFEDGDEVKKL 120

Query: 121 PRCTHTFHASCIDMWLYSHSDCPLCRAPVA--GLSRHEATAEQEENSGHVLLE 161
           PRCTH FHASCIDMWL+SHSDCPLCRAPV   GLS+H+A AEQEENSGH LLE
Sbjct: 121 PRCTHMFHASCIDMWLFSHSDCPLCRAPVVAQGLSQHQAMAEQEENSGHGLLE 173

[Close]

BLAST of CsGy1G027660 vs. NCBI nr
Match: XP_022147740.1 (E3 ubiquitin-protein ligase EL5-like [Momordica charantia])

HSP 1 Score: 231 bits (590), Expect = 9.21e-75
Identity = 127/165 (76.97%), Postives = 132/165 (80.00%), Query Frame = 0


Query: 10  TPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRR--MAGSYEEMMNSSR 69
           TPHPAKSSLPMLYYGLVVVGTAAIVLV+YNFIVI+WCSD R R    MA SY EMM+SS 
Sbjct: 15  TPHPAKSSLPMLYYGLVVVGTAAIVLVVYNFIVIRWCSDRRGRGSPGMARSYAEMMSSSG 74

Query: 70  SFQSS----LSSFKFKKVAGAGA----EEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHA 129
           SFQSS    LSSF+FKK   A A    EEGNG ECAVCLSAFEDGEEVKKLPRCTH FHA
Sbjct: 75  SFQSSSRNLLSSFRFKKGTKAAAATAEEEGNGLECAVCLSAFEDGEEVKKLPRCTHMFHA 134

Query: 130 SCIDMWLYSHSDCPLCRAPVA---GLSRHEATAEQEENSGHVLLE 161
            CIDMWLYSHSDCPLCRAPVA   GL +H   AEQ ENSGH LLE
Sbjct: 135 PCIDMWLYSHSDCPLCRAPVALAPGLCQHHTAAEQPENSGHGLLE 179

[Close]

BLAST of CsGy1G027660 vs. NCBI nr
Match: XP_022987479.1 (E3 ubiquitin-protein ligase EL5-like [Cucurbita maxima])

HSP 1 Score: 227 bits (578), Expect = 5.41e-73
Identity = 126/175 (72.00%), Postives = 137/175 (78.29%), Query Frame = 0


Query: 1   MSDSST---STSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRR--- 60
           MSDS++   S  T HPAKSSLPMLYYGLVV+GTAAIVLVLYNFIVI WCSDNR  R    
Sbjct: 1   MSDSASNHFSQPTNHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60

Query: 61  MAGSYEEMMNSSRSFQSS----LSSFKFKKVAGAGA--EEGNGNECAVCLSAFEDGEEVK 120
           +AGSY EM+NSSRS QSS    L SFKFKK + A A  EEGNGNEC VCLSAFE+GEEVK
Sbjct: 61  LAGSYAEMVNSSRSLQSSNRNLLCSFKFKKGSAAAAVEEEGNGNECVVCLSAFEEGEEVK 120

Query: 121 KLPRCTHTFHASCIDMWLYSHSDCPLCRAPVA--GLSRHEATAEQEENSGHVLLE 161
           KLPRC H FHA CIDMWL+SH DCPLCRAPVA  GLS+ +  AEQ+ NSGH L E
Sbjct: 121 KLPRCLHMFHARCIDMWLFSHCDCPLCRAPVAVPGLSKRQTAAEQQGNSGHGLPE 175

[Close]

BLAST of CsGy1G027660 vs. ExPASy TrEMBL
Match: A0A0A0LWX2 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G595820 PE=3 SV=1)

HSP 1 Score: 317 bits (812), Expect = 3.61e-109
Identity = 161/166 (96.99%), Postives = 161/166 (96.99%), Query Frame = 0


Query: 1   MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE 60
           MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE
Sbjct: 1   MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE 60

Query: 61  EMMNSSRSFQSSLSSFKFKKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHAS 120
           EMMNSSRSFQSSLSSFKFKKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHAS
Sbjct: 61  EMMNSSRSFQSSLSSFKFKKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHAS 120

Query: 121 CIDMWLYSHSDCPLCRAPVA----GLSRHEATAEQEENSGHVLLEV 162
           CIDMWLYSHSDCPLCRAPVA    G SRHEATAEQEENSGHVLLEV
Sbjct: 121 CIDMWLYSHSDCPLCRAPVAVAVAGRSRHEATAEQEENSGHVLLEV 166

[Close]

BLAST of CsGy1G027660 vs. ExPASy TrEMBL
Match: A0A5A7UKT6 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001780 PE=3 SV=1)

HSP 1 Score: 288 bits (736), Expect = 1.35e-97
Identity = 153/167 (91.62%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE 60
           MSDSSTST  PHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSD+RHRRRMA SYE
Sbjct: 1   MSDSSTST--PHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDSRHRRRMAVSYE 60

Query: 61  EMMNSSRSFQSSLSSFKFKKVAGAGA--EEGNGNECAVCLSAFEDGEEVKKLPRCTHTFH 120
           EMMNSSRSFQSSLSSFKFKKVA A A  EEGNGNECAVCLSAFEDGEEVKKLPRCTHTFH
Sbjct: 61  EMMNSSRSFQSSLSSFKFKKVAAATATAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFH 120

Query: 121 ASCIDMWLYSHSDCPLCRAPVA--GLSRHEAT-AEQEENSGHVLLEV 162
           ASCIDMWLYSHSDCPLCRAPVA  G+SRHE T AEQ+ENSGHVLLEV
Sbjct: 121 ASCIDMWLYSHSDCPLCRAPVAVPGVSRHETTTAEQDENSGHVLLEV 165

[Close]

BLAST of CsGy1G027660 vs. ExPASy TrEMBL
Match: A0A1S3BQC4 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103492354 PE=3 SV=1)

HSP 1 Score: 288 bits (736), Expect = 1.35e-97
Identity = 153/167 (91.62%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE 60
           MSDSSTST  PHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSD+RHRRRMA SYE
Sbjct: 1   MSDSSTST--PHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDSRHRRRMAVSYE 60

Query: 61  EMMNSSRSFQSSLSSFKFKKVAGAGA--EEGNGNECAVCLSAFEDGEEVKKLPRCTHTFH 120
           EMMNSSRSFQSSLSSFKFKKVA A A  EEGNGNECAVCLSAFEDGEEVKKLPRCTHTFH
Sbjct: 61  EMMNSSRSFQSSLSSFKFKKVAAATATAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFH 120

Query: 121 ASCIDMWLYSHSDCPLCRAPVA--GLSRHEAT-AEQEENSGHVLLEV 162
           ASCIDMWLYSHSDCPLCRAPVA  G+SRHE T AEQ+ENSGHVLLEV
Sbjct: 121 ASCIDMWLYSHSDCPLCRAPVAVPGVSRHETTTAEQDENSGHVLLEV 165

[Close]

BLAST of CsGy1G027660 vs. ExPASy TrEMBL
Match: A0A6J1D0Z7 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111016600 PE=3 SV=1)

HSP 1 Score: 231 bits (590), Expect = 4.46e-75
Identity = 127/165 (76.97%), Postives = 132/165 (80.00%), Query Frame = 0


Query: 10  TPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRR--MAGSYEEMMNSSR 69
           TPHPAKSSLPMLYYGLVVVGTAAIVLV+YNFIVI+WCSD R R    MA SY EMM+SS 
Sbjct: 15  TPHPAKSSLPMLYYGLVVVGTAAIVLVVYNFIVIRWCSDRRGRGSPGMARSYAEMMSSSG 74

Query: 70  SFQSS----LSSFKFKKVAGAGA----EEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHA 129
           SFQSS    LSSF+FKK   A A    EEGNG ECAVCLSAFEDGEEVKKLPRCTH FHA
Sbjct: 75  SFQSSSRNLLSSFRFKKGTKAAAATAEEEGNGLECAVCLSAFEDGEEVKKLPRCTHMFHA 134

Query: 130 SCIDMWLYSHSDCPLCRAPVA---GLSRHEATAEQEENSGHVLLE 161
            CIDMWLYSHSDCPLCRAPVA   GL +H   AEQ ENSGH LLE
Sbjct: 135 PCIDMWLYSHSDCPLCRAPVALAPGLCQHHTAAEQPENSGHGLLE 179

[Close]

BLAST of CsGy1G027660 vs. ExPASy TrEMBL
Match: A0A6J1JJ05 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111485020 PE=3 SV=1)

HSP 1 Score: 227 bits (578), Expect = 2.62e-73
Identity = 126/175 (72.00%), Postives = 137/175 (78.29%), Query Frame = 0


Query: 1   MSDSST---STSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRR--- 60
           MSDS++   S  T HPAKSSLPMLYYGLVV+GTAAIVLVLYNFIVI WCSDNR  R    
Sbjct: 1   MSDSASNHFSQPTNHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60

Query: 61  MAGSYEEMMNSSRSFQSS----LSSFKFKKVAGAGA--EEGNGNECAVCLSAFEDGEEVK 120
           +AGSY EM+NSSRS QSS    L SFKFKK + A A  EEGNGNEC VCLSAFE+GEEVK
Sbjct: 61  LAGSYAEMVNSSRSLQSSNRNLLCSFKFKKGSAAAAVEEEGNGNECVVCLSAFEEGEEVK 120

Query: 121 KLPRCTHTFHASCIDMWLYSHSDCPLCRAPVA--GLSRHEATAEQEENSGHVLLE 161
           KLPRC H FHA CIDMWL+SH DCPLCRAPVA  GLS+ +  AEQ+ NSGH L E
Sbjct: 121 KLPRCLHMFHARCIDMWLFSHCDCPLCRAPVAVPGLSKRQTAAEQQGNSGHGLPE 175

[Close]

BLAST of CsGy1G027660 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 4.6e-19
Identity = 61/182 (33.52%), Postives = 90/182 (49.45%), Query Frame = 0


Query: 1   MSDSSTSTSTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRRMAGSYE 60
           + D S+S+S      SS   L   L+ + T+A++LV Y  ++ K+C    HR     S  
Sbjct: 43  LDDDSSSSS------SSFSPLLIALIGILTSALILVSYYTLISKYC----HRHHQTSS-S 102

Query: 61  EMMNSSRSFQSSLSSFKFKKVAGAGAEEG-----------------NGNECAVCLSAFED 120
           E +N + + +   SS +     G G  E                  +G++C+VCLS FE+
Sbjct: 103 ETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEE 162

Query: 121 GEEVKKLPRCTHTFHASCIDMWLYSHSDCPLCRAPVAGLSRHEATAEQ--------EENS 158
            E ++ LP+C H FH  CID WL SHS+CPLCRA V G++   A+  Q        + NS
Sbjct: 163 NESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQSNS 213

[Close]

BLAST of CsGy1G027660 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-17
Identity = 62/180 (34.44%), Postives = 86/180 (47.78%), Query Frame = 0


Query: 4   SSTSTSTPHPAKSS----LPMLYYGLVVVGTAAIVLVLYNFIVIKWCSD------NRHRR 63
           S+T TS   P  SS     P+L   ++ +   A +LV Y   VIK C +       R RR
Sbjct: 23  STTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRR 82

Query: 64  RMAGSYEEMMNSSRSFQSSLSS--------FKFKK---VAGAGAEEGNGNECAVCLSAFE 123
           R +     M+ S       L          FKFKK   VAG   +  N  EC+VCL+ F+
Sbjct: 83  RSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQ 142

Query: 124 DGEEVKKLPRCTHTFHASCIDMWLYSHSDCPLCRAPVA-----GLSRHEATAEQEENSGH 158
           + E+++ +P C H FH  CID+WL  +++CPLCR  V+      L    A +   ENS H
Sbjct: 143 EDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSSPRENSPH 202

[Close]

BLAST of CsGy1G027660 vs. TAIR 10
Match: AT2G17450.1 (RING-H2 finger A3A )

HSP 1 Score: 84.7 bits (208), Expect = 7.4e-17
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 79  KKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHASCIDMWLYSHSDCPLCR-- 138
           +  +GA AEEG+  ECA+CL+ F DGEE++ LP C H+FH  CID WL S S CP CR  
Sbjct: 87  ESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRI 146

Query: 139 -APV-AGLSRHEATAEQEENS 156
             PV      H +TAE ++ +
Sbjct: 147 LTPVRCDRCGHASTAEMKDQA 167

[Close]

BLAST of CsGy1G027660 vs. TAIR 10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2 )

HSP 1 Score: 84.3 bits (207), Expect = 9.6e-17
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 93  ECAVCLSAFEDGEEVKKLPRCTHTFHASCIDMWLYSHSDCPLCRAPVAGLSRHEATAEQE 152
           ECAVCLS FE+ E  + LP C HTFH  CIDMW +SHS CPLCR+ V  L+  E+TA   
Sbjct: 118 ECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAR 177

Query: 153 E 154
           E
Sbjct: 178 E 178

[Close]

BLAST of CsGy1G027660 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 81.3 bits (199), Expect = 8.1e-16
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 67  RSFQSSLSSFKFKKVAGAGAEEGNGNECAVCLSAFEDGEEVKKLPRCTHTFHASCIDMWL 126
           RS  +S++   FKK  G      +G EC+VCL+ FE+ E ++ LP+C+H FH +CID WL
Sbjct: 112 RSAINSITVVGFKKGEGI----IDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWL 171

Query: 127 YSHSDCPLCRAPV 140
            SH +CPLCRAPV
Sbjct: 172 LSHKNCPLCRAPV 180

The following BLAST results are available for this feature:

BLAST of CsGy1G027660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LF64	6.5e-18	33.52	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
P93823	2.1e-16	34.44	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]
O22755	1.0e-15	48.15	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
Q8L9T5	1.4e-15	59.02	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2	[more]
Q9LX93	1.1e-14	50.68	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]

BLAST of CsGy1G027660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144121.1	7.45e-109	96.99	RING-H2 finger protein ATL39 [Cucumis sativus] >KGN66278.1 hypothetical protein ...	[more]
XP_008450904.1	2.79e-97	91.62	PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo] >KAA0055794.1 RING-H...	[more]
XP_038879803.1	2.02e-86	80.35	RING-H2 finger protein ATL39-like [Benincasa hispida]	[more]
XP_022147740.1	9.21e-75	76.97	E3 ubiquitin-protein ligase EL5-like [Momordica charantia]	[more]
XP_022987479.1	5.41e-73	72.00	E3 ubiquitin-protein ligase EL5-like [Cucurbita maxima]	[more]

BLAST of CsGy1G027660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWX2	3.61e-109	96.99	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G595820 PE...	[more]
A0A5A7UKT6	1.35e-97	91.62	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BQC4	1.35e-97	91.62	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103492354 PE=3 ...	[more]
A0A6J1D0Z7	4.46e-75	76.97	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11101660...	[more]
A0A6J1JJ05	2.62e-73	72.00	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111485020 P...	[more]

BLAST of CsGy1G027660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17600.1	4.6e-19	33.52	RING/U-box superfamily protein	[more]
AT1G04360.1	1.5e-17	34.44	RING/U-box superfamily protein	[more]
AT2G17450.1	7.4e-17	48.15	RING-H2 finger A3A	[more]
AT3G16720.1	9.6e-17	59.02	TOXICOS EN LEVADURA 2	[more]
AT5G10380.1	8.1e-16	50.68	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 94..135 e-value: 3.2E-6 score: 36.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 92..136 e-value: 1.2E-13 score: 51.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 94..136 score: 12.312242
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 49..141 e-value: 5.8E-22 score: 79.2
None	No IPR available	PANTHER	PTHR45676:SF84	RING-H2 FINGER PROTEIN ATL52-LIKE	coord: 6..160
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 93..136 e-value: 1.22826E-18 score: 72.7279
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 87..140
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 6..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G027660.1	CsGy1G027660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane