CsGy1G026505 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G026505
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RNA cytidine acetyltransferase
Location	Gy14Chr1: 25051874 .. 25052053 (-)
RNA-Seq Expression	CsGy1G026505
Synteny	CsGy1G026505

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTTGATATCGAATTGCATAAATATGGGATTGAAAATAGAGAAGGTGAATTGAAGCAGGCTCTTCAACAATGCAATTCATTATCAAAAAGTGGTCTTATTAGTGTCAAATCATCTTCTCAACCCGATAAGTTGGATATGGGCGTTACAAGTTCCAAGAGAAAAAGAAAACATTGA

mRNA sequence

ATGGGAGTTGATATCGAATTGCATAAATATGGGATTGAAAATAGAGAAGGTGAATTGAAGCAGGCTCTTCAACAATGCAATTCATTATCAAAAAGTGGTCTTATTAGTGTCAAATCATCTTCTCAACCCGATAAGTTGGATATGGGCGTTACAAGTTCCAAGAGAAAAAGAAAACATTGA

Coding sequence (CDS)

ATGGGAGTTGATATCGAATTGCATAAATATGGGATTGAAAATAGAGAAGGTGAATTGAAGCAGGCTCTTCAACAATGCAATTCATTATCAAAAAGTGGTCTTATTAGTGTCAAATCATCTTCTCAACCCGATAAGTTGGATATGGGCGTTACAAGTTCCAAGAGAAAAAGAAAACATTGA

Protein sequence

MGVDIELHKYGIENREGELKQALQQCNSLSKSGLISVKSSSQPDKLDMGVTSSKRKRKH*

Homology

[Close]

BLAST of CsGy1G026505 vs. NCBI nr
Match: KGN66150.1 (hypothetical protein Csa_007399 [Cucumis sativus])

HSP 1 Score: 115 bits (289), Expect = 2.16e-32
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MGVDIELHKYGIENREGELKQALQQCNSLSKSGLISVKSSSQPDKLDMGVTSSKRKRKH 59
          MGVDIELHKYGIENREGELKQALQQCNSLSKSGLISVKSSSQPDKLDMGVTSSKRKRKH
Sbjct: 1  MGVDIELHKYGIENREGELKQALQQCNSLSKSGLISVKSSSQPDKLDMGVTSSKRKRKH 59

[Close]

BLAST of CsGy1G026505 vs. NCBI nr
Match: KAA0055962.1 (RNA cytidine acetyltransferase 1-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 2.27e-20
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MGV-DIELHKYGIENREGELKQALQQCNSLSKSGLISVKSS-SQPDKLDMGVTSSKRKRK 59
           MGV D++L KYGIENRE ELKQALQQCNSLSKSGLISVKSS +QP KLDM VTSSKRKRK
Sbjct: 869 MGVEDVQLQKYGIENREAELKQALQQCNSLSKSGLISVKSSYAQPGKLDMSVTSSKRKRK 928

[Close]

BLAST of CsGy1G026505 vs. NCBI nr
Match: XP_008450325.1 (PREDICTED: RNA cytidine acetyltransferase 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 93.6 bits (231), Expect = 2.27e-20
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1    MGV-DIELHKYGIENREGELKQALQQCNSLSKSGLISVKSS-SQPDKLDMGVTSSKRKRK 59
            MGV D++L KYGIENRE ELKQALQQCNSLSKSGLISVKSS +QP KLDM VTSSKRKRK
Sbjct: 947  MGVEDVQLQKYGIENREAELKQALQQCNSLSKSGLISVKSSYAQPGKLDMSVTSSKRKRK 1006

[Close]

BLAST of CsGy1G026505 vs. NCBI nr
Match: XP_016900870.1 (PREDICTED: RNA cytidine acetyltransferase 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 93.6 bits (231), Expect = 2.27e-20
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1    MGV-DIELHKYGIENREGELKQALQQCNSLSKSGLISVKSS-SQPDKLDMGVTSSKRKRK 59
            MGV D++L KYGIENRE ELKQALQQCNSLSKSGLISVKSS +QP KLDM VTSSKRKRK
Sbjct: 955  MGVEDVQLQKYGIENREAELKQALQQCNSLSKSGLISVKSSYAQPGKLDMSVTSSKRKRK 1014

[Close]

BLAST of CsGy1G026505 vs. NCBI nr
Match: TYK10177.1 (RNA cytidine acetyltransferase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 1.08e-19
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MGV-DIELHKYGIENREGELKQALQQCNSLSKSGLISVKSS-SQPDKLDMGVTSSKRKRK 59
           MGV DIEL +YGIENRE ELKQALQQC+SLSKSGLISVKSS +QP KLDM VTSSKRKRK
Sbjct: 853 MGVEDIELQEYGIENREAELKQALQQCSSLSKSGLISVKSSYAQPGKLDMSVTSSKRKRK 912

[Close]

BLAST of CsGy1G026505 vs. ExPASy TrEMBL
Match: A0A0A0LW73 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573690 PE=4 SV=1)

HSP 1 Score: 115 bits (289), Expect = 1.05e-32
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MGVDIELHKYGIENREGELKQALQQCNSLSKSGLISVKSSSQPDKLDMGVTSSKRKRKH 59
          MGVDIELHKYGIENREGELKQALQQCNSLSKSGLISVKSSSQPDKLDMGVTSSKRKRKH
Sbjct: 1  MGVDIELHKYGIENREGELKQALQQCNSLSKSGLISVKSSSQPDKLDMGVTSSKRKRKH 59

[Close]

BLAST of CsGy1G026505 vs. ExPASy TrEMBL
Match: A0A5A7UJA5 (RNA cytidine acetyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00920 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.10e-20
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MGV-DIELHKYGIENREGELKQALQQCNSLSKSGLISVKSS-SQPDKLDMGVTSSKRKRK 59
           MGV D++L KYGIENRE ELKQALQQCNSLSKSGLISVKSS +QP KLDM VTSSKRKRK
Sbjct: 869 MGVEDVQLQKYGIENREAELKQALQQCNSLSKSGLISVKSSYAQPGKLDMSVTSSKRKRK 928

[Close]

BLAST of CsGy1G026505 vs. ExPASy TrEMBL
Match: A0A1S3BPM7 (RNA cytidine acetyltransferase OS=Cucumis melo OX=3656 GN=LOC103491965 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.10e-20
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1    MGV-DIELHKYGIENREGELKQALQQCNSLSKSGLISVKSS-SQPDKLDMGVTSSKRKRK 59
            MGV D++L KYGIENRE ELKQALQQCNSLSKSGLISVKSS +QP KLDM VTSSKRKRK
Sbjct: 947  MGVEDVQLQKYGIENREAELKQALQQCNSLSKSGLISVKSSYAQPGKLDMSVTSSKRKRK 1006

[Close]

BLAST of CsGy1G026505 vs. ExPASy TrEMBL
Match: A0A1S4DYS3 (RNA cytidine acetyltransferase OS=Cucumis melo OX=3656 GN=LOC103491965 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.10e-20
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1    MGV-DIELHKYGIENREGELKQALQQCNSLSKSGLISVKSS-SQPDKLDMGVTSSKRKRK 59
            MGV D++L KYGIENRE ELKQALQQCNSLSKSGLISVKSS +QP KLDM VTSSKRKRK
Sbjct: 955  MGVEDVQLQKYGIENREAELKQALQQCNSLSKSGLISVKSSYAQPGKLDMSVTSSKRKRK 1014

[Close]

BLAST of CsGy1G026505 vs. ExPASy TrEMBL
Match: A0A5D3CDX3 (RNA cytidine acetyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003220 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.22e-20
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MGV-DIELHKYGIENREGELKQALQQCNSLSKSGLISVKSS-SQPDKLDMGVTSSKRKRK 59
           MGV DIEL +YGIENRE ELKQALQQC+SLSKSGLISVKSS +QP KLDM VTSSKRKRK
Sbjct: 853 MGVEDIELQEYGIENREAELKQALQQCSSLSKSGLISVKSSYAQPGKLDMSVTSSKRKRK 912

The following BLAST results are available for this feature:

BLAST of CsGy1G026505 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G026505 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66150.1	2.16e-32	100.00	hypothetical protein Csa_007399 [Cucumis sativus]	[more]
KAA0055962.1	2.27e-20	85.25	RNA cytidine acetyltransferase 1-like isoform X2 [Cucumis melo var. makuwa]	[more]
XP_008450325.1	2.27e-20	85.25	PREDICTED: RNA cytidine acetyltransferase 1-like isoform X2 [Cucumis melo]	[more]
XP_016900870.1	2.27e-20	85.25	PREDICTED: RNA cytidine acetyltransferase 1-like isoform X1 [Cucumis melo]	[more]
TYK10177.1	1.08e-19	85.25	RNA cytidine acetyltransferase 1-like [Cucumis melo var. makuwa]	[more]

BLAST of CsGy1G026505 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW73	1.05e-32	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573690 PE=4 SV=1	[more]
A0A5A7UJA5	1.10e-20	85.25	RNA cytidine acetyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3BPM7	1.10e-20	85.25	RNA cytidine acetyltransferase OS=Cucumis melo OX=3656 GN=LOC103491965 PE=3 SV=1	[more]
A0A1S4DYS3	1.10e-20	85.25	RNA cytidine acetyltransferase OS=Cucumis melo OX=3656 GN=LOC103491965 PE=3 SV=1	[more]
A0A5D3CDX3	5.22e-20	85.25	RNA cytidine acetyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of CsGy1G026505 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 12..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G026505.1	CsGy1G026505.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042274	ribosomal small subunit biogenesis
biological_process	GO:0000154	rRNA modification
biological_process	GO:0051391	tRNA acetylation
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008080	N-acetyltransferase activity