CsGy1G026290 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy1G026290
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptiontrafficking protein particle complex subunit 6B
LocationGy14Chr1: 24946932 .. 24950402 (-)
RNA-Seq ExpressionCsGy1G026290
SyntenyCsGy1G026290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGATTTTACATGAAATTTAATATTTTGGTGCTGAATTGGTAATCATTCGTACGACATGTCGTCATTTAGTTGTTGAATCTAGACTGAGGGCGGAATCAAGGCAGTGACCCAATCGATCTTCTCTCATCCTCCATCTTGTTTTTGATTTCCTTCCCAATTCCGTCGAAGTGAGCTTCTTCAGCTTTCTACAATTCCACTTTGATCGAAGGTAAAAACACATGGGGAGAGAGGTAGCAGAGAGTTGCGTTGACAGTCTTTTGACGGAAATGGTTTCCACTTATTGCCATCGATTCTACGCCAATAAGCCGGAGCTAGCCGCCCGTCGCATCGAGGCAATTGGTTATCAGGTTGGCCATCAGCTCTCCGAACGGTATTTCTCCAACCCCACTTTCTACCCTTCTTTTTTTGTTGCTTAGATTTTGATTTCCAATGTTGGCTAATGGATCTCTGATTCAGTTTCTTAATTCTTTTTACTTTTTCTGTTTTACTGAATGTATATGTTGGGAGATTTATATTTGAGCTTGTGAAGAACAATAGTTGGGACTAGAATTGCGGGTTAGAAGTGTTCCCTCAACACCCCACCACATAGGAAAAGGAATTTTGTGTAATTGAAAACATCTAGCATTCTATAATGAAAGCGGGAGGATAAAAAGTTGAATTTTGCAGGATAATAAAACCATATAATGGACTAGTTTTTGGGATATGACAGATACTCAATAACAAAACAGTATACATGACAATGGCTAGGCTCTAGAGTTACTTCTGATCATCGTTTGGTGTGCTTAGACTTGGTCATTTTGAAATGGGTTCTAACCCCCCCTTCAGATTTGAGAATATGTGCATGTTTCGTCCCTCTTTTAGAGCCTAGCCTATTTTACCCTTCAAGTGTGCGCCAGAGGTAGAGGTCTTAGGAAAATGGGAAGGTTATGGTTTTTGGGTAAGCCTCACAGTTTGAGAGAGTCCCTTAATTCGGAATCGTGAAGTTTTTGGAGACTGAAAATCCAGAAACTAGATTAACTAAACTGTAATACCATGATGGGTTGATTGGAAGAGGTGCTTTAAACAGAGAGAGGGAAGGTTATCTCTGAAAGTTGAGTTTGAAGAGGTGATTATTTGTGAAACTATCTGCTTGAGGCAAAAGGCTAAATTTACATAGGCTAAGGAGGGCAGAACAACACTGCTTACCTCCATATGGTTGGCCACAGCGAAAGTAGTTATTCTCATAATTTTTTTTTAAAAAAAACCACTGGTTTGCAAAGATGGGAAACTGTACGATAAGGAGACTGAAGAGGGAGTTCTCTCTTTTTTCTCCTCTCTTTATGGTTTGACTATGGGTTATCTCACCGAAGCCTTTCCTTGAGGGGCTCTCCCATCTCAAATGAACCCCAGCCAGATGGTTTCACTATGGCGTTTTTCTAGATAACTGGGGTTTATGATCTTTGGAAAGTGTCTTTTGAGCTATACAAGTGAGGAGTGGTGGATAAGTCAATGAACAAAACTTTTGTCTCGCTGTTTCCTAAGAAGGAAAATGTGAAGGATCTAGGAGTTTAGACCCAAGAAATGTGAAGGTTTAGGAGTTTAGACCCAAGAAATGTGAAGGTTTAGGCGTTTAGACCCATGAGCTTACTCGCTTGGGTATCTCTGATTTTAGCCATGGTCTTGGTGAATGGACTGAGGAAAGTCCTCCCCTGGACTATCTCTGATTTGCAAATGGCCGTCGTTCCTTGAAGGAACATCTTGGATCAGGCTCTTATAGCTAATGAGGCTATCGAGGATTATCATAACTGTAAGCCCTTATATTCAAGATTTTTTCCAGAGGAGTGAAGAAGGGAGTTCTTGAGGGTTTTCGGGTGGAGAAGATTATCTTCTATTTGCTGATAACTCCATATTCTTTTATGTGGAAAAGAGGAGTCTTTTGTCAATTTTAATTGAATCTTTTAGTTCTTTGAGTCAAAGACTATCTTAAGTTTAAAGATTATCAAAGACAGACAATATTCCAAAAAAAAAAAAAAGATGAACAAAGACAAATGTTGAGTTATTGGTATCCAGGGTAGCCCCTCCAAGCTGGAGAGATGGGCTTCTTGGGTGCGTTGTGAAGGATCTTCCTTTTCTTTTTATTTTTATTTCCACGGCCGGGATTTTTTTGTTCCAATGAATCGTAGATCAAATTATTTTTTAAAATGGAGGGATGTGCTTTGGAAGGAAAGTAGAAACTGGGAGGGCAGGAACTCTCTGATCTTTCCCCAGAGATGTTTGTTTTCCTGTTTAACTTGTAAAATATTCTGCTGAGAGTCAATACATTATGAGTCAATACATTATGGCTTAGCTTCCATTTCCGTTCCTGTTTTATGGCTTCTTATTCACGGTACTTGACGACTAAATACTGCAACTTTACTGTTAAGCTTTGTTTTCACTAGGTATACGATGGAGCGGCCTCGGTTCACGGATCATCTTGAAGCAATCAAATTTATCTGCAAGGACTTCTGGTCCGAACTCTTCAAAAAGCAAATAGACAACTTGAAAACAAATCATAGGGTAAGATCAAAAGCCAAACCTAGAAGCAGCCGTTCTTTTTCTTGTGTACTGTACTTGATCCTACATGAACTCGACCTAAATATGGAAAATTGTTTTGATTCCCAGGGCACCTTTGTCTTGCAAGATAATCGATTCCGCTGGCTTACTCGCATGTCGGTGGATCCTCAAAATGAATCACAAGATAATTCTGCAGATGGTGAAAACAAGGTAGCTCAAGCAACAAGCATGCATCTATATTTCCCATGCGGAATCATACGAGGTGCTCTTTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTTCCAGCATGTAAGTAATCGAACTTAAATTATAATCCCCACTTTGCTTCTAGGTTCCAGAACTGAGAAAATGACCTGTTGAAATCACTTTGTTTTATGAAATAGGTTCATTTGTTGTTCGTATAAAGGCCTGATGAGAAGTGTATCAAAAAGTAGAGATTTTATCTTTGGGATATGAAGACTTGGTAGATCCTTAACACCACCCTCCAGTTGCAATCCTTTCTGTTTTGTTTCCTTTTCTGCTTTCTTTATTCCTCTATCTTCTCCTAGTTCACAAAACTCTTAGCACAAAAATCTGTTGGACAAACGTTTGTTGTATGAAAGTCAATAGCGAATACTTTTCAGAATTTCATGATTGTAGAGATACATTGAGGTTTATTTTATATTATACCATTTGGGAGGATTGGTTCATATGCTATGATTCTATAAAGATCAACTATCTAGAATGTTAAGGTTCTATGGGTTTCGAGATAATTAAAATATTGTAGAGTTGGTCATTCATGAGATTGATCGTTCATTGTCATTAGCCACCTCCTAGTACACCTAAGCATTTTGCTTATATTATTATTGTACATTCTCATATTTTGATGGTATATATGCAAATATTGAAATGAATATGGAAGC

mRNA sequence

GGATTTTACATGAAATTTAATATTTTGGTGCTGAATTGGTAATCATTCGTACGACATGTCGTCATTTAGTTGTTGAATCTAGACTGAGGGCGGAATCAAGGCAGTGACCCAATCGATCTTCTCTCATCCTCCATCTTGTTTTTGATTTCCTTCCCAATTCCGTCGAAGTGAGCTTCTTCAGCTTTCTACAATTCCACTTTGATCGAAGGTAAAAACACATGGGGAGAGAGGTAGCAGAGAGTTGCGTTGACAGTCTTTTGACGGAAATGGTTTCCACTTATTGCCATCGATTCTACGCCAATAAGCCGGAGCTAGCCGCCCGTCGCATCGAGGCAATTGGTTATCAGGTTGGCCATCAGCTCTCCGAACGCTTTGTTTTCACTAGGTATACGATGGAGCGGCCTCGGTTCACGGATCATCTTGAAGCAATCAAATTTATCTGCAAGGACTTCTGGTCCGAACTCTTCAAAAAGCAAATAGACAACTTGAAAACAAATCATAGGGTAAGATCAAAAGCCAAACCTAGAAGCAGCCGTTCTTTTTCTTGTGTACTGTACTTGATCCTACATGAACTCGACCTAAATATGGAAAATTGTTTTGATTCCCAGGGCACCTTTGTCTTGCAAGATAATCGATTCCGCTGGCTTACTCGCATGTCGGTGGATCCTCAAAATGAATCACAAGATAATTCTGCAGATGGTGAAAACAAGGTAGCTCAAGCAACAAGCATGCATCTATATTTCCCATGCGGAATCATACGAGGTGCTCTTTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTTCCAGCATGTTCATTTGTTGTTCGTATAAAGGCCTGATGAGAAGTGTATCAAAAAGTAGAGATTTTATCTTTGGGATATGAAGACTTGGTAGATCCTTAACACCACCCTCCAGTTGCAATCCTTTCTGTTTTGTTTCCTTTTCTGCTTTCTTTATTCCTCTATCTTCTCCTAGTTCACAAAACTCTTAGCACAAAAATCTGTTGGACAAACGTTTGTTGTATGAAAGTCAATAGCGAATACTTTTCAGAATTTCATGATTGTAGAGATACATTGAGGTTTATTTTATATTATACCATTTGGGAGGATTGGTTCATATGCTATGATTCTATAAAGATCAACTATCTAGAATGTTAAGGTTCTATGGGTTTCGAGATAATTAAAATATTGTAGAGTTGGTCATTCATGAGATTGATCGTTCATTGTCATTAGCCACCTCCTAGTACACCTAAGCATTTTGCTTATATTATTATTGTACATTCTCATATTTTGATGGTATATATGCAAATATTGAAATGAATATGGAAGC

Coding sequence (CDS)

ATGGGGAGAGAGGTAGCAGAGAGTTGCGTTGACAGTCTTTTGACGGAAATGGTTTCCACTTATTGCCATCGATTCTACGCCAATAAGCCGGAGCTAGCCGCCCGTCGCATCGAGGCAATTGGTTATCAGGTTGGCCATCAGCTCTCCGAACGCTTTGTTTTCACTAGGTATACGATGGAGCGGCCTCGGTTCACGGATCATCTTGAAGCAATCAAATTTATCTGCAAGGACTTCTGGTCCGAACTCTTCAAAAAGCAAATAGACAACTTGAAAACAAATCATAGGGTAAGATCAAAAGCCAAACCTAGAAGCAGCCGTTCTTTTTCTTGTGTACTGTACTTGATCCTACATGAACTCGACCTAAATATGGAAAATTGTTTTGATTCCCAGGGCACCTTTGTCTTGCAAGATAATCGATTCCGCTGGCTTACTCGCATGTCGGTGGATCCTCAAAATGAATCACAAGATAATTCTGCAGATGGTGAAAACAAGGTAGCTCAAGCAACAAGCATGCATCTATATTTCCCATGCGGAATCATACGAGGTGCTCTTTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTTCCAGCATGTTCATTTGTTGTTCGTATAAAGGCCTGA

Protein sequence

MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRVRSKAKPRSSRSFSCVLYLILHELDLNMENCFDSQGTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA*
Homology
[Close]
BLAST of CsGy1G026290 vs. ExPASy Swiss-Prot
Match: Q32L78 (Trafficking protein particle complex subunit 6B OS=Bos taurus OX=9913 GN=TRAPPC6B PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-25
Identity = 69/175 (39.43%), Postives = 92/175 (52.57%), Query Frame = 0 

Query: 36  RIEAIGYQVGHQLSERFVFTRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR 95
           ++E +G++VG  L ERF     T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH 
Sbjct: 35  KLENMGFRVGQGLIERF-----TKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNH- 94

Query: 96  VRSKAKPRSSRSFSCVLYLILHELDLNMENCFDSQGTFVLQDNRFRWLTRMSVDPQNESQ 155
                                             QG +VLQDN+FR LT+MS   Q    
Sbjct: 95  ----------------------------------QGIYVLQDNKFRLLTQMSAGKQ---- 154

Query: 156 DNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 211
                      +  S +L F CG+IRG LSNLGI   V+A++S++PAC F V I+
Sbjct: 155 ---------YLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156

[Close]
BLAST of CsGy1G026290 vs. ExPASy Swiss-Prot
Match: Q86SZ2 (Trafficking protein particle complex subunit 6B OS=Homo sapiens OX=9606 GN=TRAPPC6B PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-25
Identity = 69/175 (39.43%), Postives = 92/175 (52.57%), Query Frame = 0 

Query: 36  RIEAIGYQVGHQLSERFVFTRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR 95
           ++E +G++VG  L ERF     T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH 
Sbjct: 35  KLENMGFRVGQGLIERF-----TKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNH- 94

Query: 96  VRSKAKPRSSRSFSCVLYLILHELDLNMENCFDSQGTFVLQDNRFRWLTRMSVDPQNESQ 155
                                             QG +VLQDN+FR LT+MS   Q    
Sbjct: 95  ----------------------------------QGIYVLQDNKFRLLTQMSAGKQ---- 154

Query: 156 DNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 211
                      +  S +L F CG+IRG LSNLGI   V+A++S++PAC F V I+
Sbjct: 155 ---------YLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156

[Close]
BLAST of CsGy1G026290 vs. ExPASy Swiss-Prot
Match: F1QMV3 (Trafficking protein particle complex subunit 6b OS=Danio rerio OX=7955 GN=trappc6b PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.2e-25
Identity = 66/175 (37.71%), Postives = 91/175 (52.00%), Query Frame = 0 

Query: 36  RIEAIGYQVGHQLSERFVFTRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR 95
           ++E +G++VG  L ERF     T + PRF D L+ +KFICKDFW+ +FKKQIDNL+TNH 
Sbjct: 34  KLENMGFRVGQGLIERF-----TKDTPRFKDELDVMKFICKDFWTSVFKKQIDNLRTNH- 93

Query: 96  VRSKAKPRSSRSFSCVLYLILHELDLNMENCFDSQGTFVLQDNRFRWLTRMSVDPQNESQ 155
                                             QG +VLQDN+FR LT++S   Q    
Sbjct: 94  ----------------------------------QGIYVLQDNKFRLLTQLSAGKQ---- 153

Query: 156 DNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 211
                      +     L F CG++RGALSN+G+   V+A++S +PAC F V I+
Sbjct: 154 ---------YLEHAPKFLAFTCGLVRGALSNIGVKSIVTAEVSVMPACKFQVMIQ 155

[Close]
BLAST of CsGy1G026290 vs. ExPASy Swiss-Prot
Match: Q9D289 (Trafficking protein particle complex subunit 6B OS=Mus musculus OX=10090 GN=Trappc6b PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.5e-25
Identity = 67/175 (38.29%), Postives = 92/175 (52.57%), Query Frame = 0 

Query: 36  RIEAIGYQVGHQLSERFVFTRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR 95
           ++E++G++VG  L ERF     T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH 
Sbjct: 35  KLESMGFRVGQGLIERF-----TKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNH- 94

Query: 96  VRSKAKPRSSRSFSCVLYLILHELDLNMENCFDSQGTFVLQDNRFRWLTRMSVDPQNESQ 155
                                             QG +VLQDN+FR L ++S   Q    
Sbjct: 95  ----------------------------------QGIYVLQDNKFRLLIQLSAGKQ---- 154

Query: 156 DNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 211
                      +  S +L F CG+IRG LSNLGI   V+A++S++PAC F V I+
Sbjct: 155 ---------YLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156

[Close]
BLAST of CsGy1G026290 vs. ExPASy Swiss-Prot
Match: Q78XR0 (Trafficking protein particle complex subunit 6A OS=Mus musculus OX=10090 GN=Trappc6a PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.5e-18
Identity = 55/174 (31.61%), Postives = 79/174 (45.40%), Query Frame = 0 

Query: 37  IEAIGYQVGHQLSERFVFTRYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRV 96
           +E +G++VG  L ER       +E P F + L+A+KF+C+D W+ +F+K +D L+TNH  
Sbjct: 37  LEGLGFRVGQALGERL-----PLETPAFREELDALKFLCRDLWAAMFQKHMDGLRTNH-- 96

Query: 97  RSKAKPRSSRSFSCVLYLILHELDLNMENCFDSQGTFVLQDNRFRWLTRMSVDPQNESQD 156
                                            QGT+VLQDN F  L  M   PQ     
Sbjct: 97  ---------------------------------QGTYVLQDNSFPLLVTMGSGPQ----- 156

Query: 157 NSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 211
                     +     L F CG++ GAL  LG    V+A +++LPAC F V I+
Sbjct: 157 --------YLEEAPKFLAFTCGLLCGALHTLGFQSLVTASVASLPACKFQVVIQ 157

[Close]
BLAST of CsGy1G026290 vs. NCBI nr
Match: XP_031736214.1 (trafficking protein particle complex subunit 6B isoform X1 [Cucumis sativus] >KAE8653391.1 hypothetical protein Csa_007534 [Cucumis sativus])

HSP 1 Score: 345 bits (885), Expect = 5.67e-119
Identity = 176/211 (83.41%), Postives = 176/211 (83.41%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRVRSKAKPRSSRSFSCVLYLILHELD 120
           RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR                         
Sbjct: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR------------------------- 120

Query: 121 LNMENCFDSQGTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGII 180
                     GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGII
Sbjct: 121 ----------GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGII 176

Query: 181 RGALSNLGIPCAVSADISNLPACSFVVRIKA 211
           RGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 181 RGALSNLGIPCAVSADISNLPACSFVVRIKA 176

[Close]
BLAST of CsGy1G026290 vs. NCBI nr
Match: XP_008450727.1 (PREDICTED: trafficking protein particle complex subunit 6B isoform X1 [Cucumis melo])

HSP 1 Score: 337 bits (864), Expect = 8.69e-116
Identity = 174/211 (82.46%), Postives = 174/211 (82.46%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVF RYTME
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVF-RYTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRVRSKAKPRSSRSFSCVLYLILHELD 120
           RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR                         
Sbjct: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR------------------------- 120

Query: 121 LNMENCFDSQGTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGII 180
                     GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENK AQATSMHLYFPCGII
Sbjct: 121 ----------GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKAAQATSMHLYFPCGII 175

Query: 181 RGALSNLGIPCAVSADISNLPACSFVVRIKA 211
           RGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 181 RGALSNLGIPCAVSADISNLPACSFVVRIKA 175

[Close]
BLAST of CsGy1G026290 vs. NCBI nr
Match: XP_004135644.1 (trafficking protein particle complex subunit 6B isoform X2 [Cucumis sativus])

HSP 1 Score: 329 bits (843), Expect = 1.20e-112
Identity = 171/211 (81.04%), Postives = 171/211 (81.04%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSER     YTME
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSER-----YTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRVRSKAKPRSSRSFSCVLYLILHELD 120
           RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR                         
Sbjct: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR------------------------- 120

Query: 121 LNMENCFDSQGTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGII 180
                     GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGII
Sbjct: 121 ----------GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGII 171

Query: 181 RGALSNLGIPCAVSADISNLPACSFVVRIKA 211
           RGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 181 RGALSNLGIPCAVSADISNLPACSFVVRIKA 171

[Close]
BLAST of CsGy1G026290 vs. NCBI nr
Match: XP_008450728.1 (PREDICTED: trafficking protein particle complex subunit 6B isoform X2 [Cucumis melo] >TYK10194.1 trafficking protein particle complex subunit 6B isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 327 bits (839), Expect = 4.88e-112
Identity = 170/211 (80.57%), Postives = 170/211 (80.57%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSER     YTME
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSER-----YTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRVRSKAKPRSSRSFSCVLYLILHELD 120
           RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR                         
Sbjct: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR------------------------- 120

Query: 121 LNMENCFDSQGTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGII 180
                     GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENK AQATSMHLYFPCGII
Sbjct: 121 ----------GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKAAQATSMHLYFPCGII 171

Query: 181 RGALSNLGIPCAVSADISNLPACSFVVRIKA 211
           RGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 181 RGALSNLGIPCAVSADISNLPACSFVVRIKA 171

[Close]
BLAST of CsGy1G026290 vs. NCBI nr
Match: XP_038878648.1 (trafficking protein particle complex subunit 6B [Benincasa hispida])

HSP 1 Score: 324 bits (831), Expect = 8.08e-111
Identity = 168/211 (79.62%), Postives = 170/211 (80.57%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREV+ESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSER     YTME
Sbjct: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSER-----YTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRVRSKAKPRSSRSFSCVLYLILHELD 120
           RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR                         
Sbjct: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR------------------------- 120

Query: 121 LNMENCFDSQGTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGII 180
                     GTFVLQDNRFRWLTRMSVDPQ+ESQDNSADGENK AQATSMHLYFPCGII
Sbjct: 121 ----------GTFVLQDNRFRWLTRMSVDPQSESQDNSADGENKAAQATSMHLYFPCGII 171

Query: 181 RGALSNLGIPCAVSADISNLPACSFVVRIKA 211
           RGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 181 RGALSNLGIPCAVSADISNLPACSFVVRIKA 171

[Close]
BLAST of CsGy1G026290 vs. ExPASy TrEMBL
Match: A0A1S3BQW9 (trafficking protein particle complex subunit 6B isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492220 PE=3 SV=1)

HSP 1 Score: 337 bits (864), Expect = 4.21e-116
Identity = 174/211 (82.46%), Postives = 174/211 (82.46%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVF RYTME
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVF-RYTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRVRSKAKPRSSRSFSCVLYLILHELD 120
           RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR                         
Sbjct: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR------------------------- 120

Query: 121 LNMENCFDSQGTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGII 180
                     GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENK AQATSMHLYFPCGII
Sbjct: 121 ----------GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKAAQATSMHLYFPCGII 175

Query: 181 RGALSNLGIPCAVSADISNLPACSFVVRIKA 211
           RGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 181 RGALSNLGIPCAVSADISNLPACSFVVRIKA 175

[Close]
BLAST of CsGy1G026290 vs. ExPASy TrEMBL
Match: A0A0A0M1M8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573010 PE=3 SV=1)

HSP 1 Score: 329 bits (843), Expect = 5.80e-113
Identity = 171/211 (81.04%), Postives = 171/211 (81.04%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSER     YTME
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSER-----YTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRVRSKAKPRSSRSFSCVLYLILHELD 120
           RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR                         
Sbjct: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR------------------------- 120

Query: 121 LNMENCFDSQGTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGII 180
                     GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGII
Sbjct: 121 ----------GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGII 171

Query: 181 RGALSNLGIPCAVSADISNLPACSFVVRIKA 211
           RGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 181 RGALSNLGIPCAVSADISNLPACSFVVRIKA 171

[Close]
BLAST of CsGy1G026290 vs. ExPASy TrEMBL
Match: A0A5D3CG65 (Trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003390 PE=3 SV=1)

HSP 1 Score: 327 bits (839), Expect = 2.36e-112
Identity = 170/211 (80.57%), Postives = 170/211 (80.57%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSER     YTME
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSER-----YTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRVRSKAKPRSSRSFSCVLYLILHELD 120
           RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR                         
Sbjct: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR------------------------- 120

Query: 121 LNMENCFDSQGTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGII 180
                     GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENK AQATSMHLYFPCGII
Sbjct: 121 ----------GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKAAQATSMHLYFPCGII 171

Query: 181 RGALSNLGIPCAVSADISNLPACSFVVRIKA 211
           RGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 181 RGALSNLGIPCAVSADISNLPACSFVVRIKA 171

[Close]
BLAST of CsGy1G026290 vs. ExPASy TrEMBL
Match: A0A1S3BP90 (trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492220 PE=3 SV=1)

HSP 1 Score: 327 bits (839), Expect = 2.36e-112
Identity = 170/211 (80.57%), Postives = 170/211 (80.57%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSER     YTME
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSER-----YTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRVRSKAKPRSSRSFSCVLYLILHELD 120
           RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR                         
Sbjct: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR------------------------- 120

Query: 121 LNMENCFDSQGTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKVAQATSMHLYFPCGII 180
                     GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENK AQATSMHLYFPCGII
Sbjct: 121 ----------GTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKAAQATSMHLYFPCGII 171

Query: 181 RGALSNLGIPCAVSADISNLPACSFVVRIKA 211
           RGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 181 RGALSNLGIPCAVSADISNLPACSFVVRIKA 171

[Close]
BLAST of CsGy1G026290 vs. ExPASy TrEMBL
Match: A0A6J1I0Q5 (trafficking protein particle complex subunit 6B OS=Cucurbita maxima OX=3661 GN=LOC111467932 PE=3 SV=1)

HSP 1 Score: 315 bits (807), Expect = 1.84e-107
Identity = 166/211 (78.67%), Postives = 168/211 (79.62%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREV+ESCVDSLLTEMVSTYC+RFYANKPELAARRIEAIGYQVGHQLSER     YTME
Sbjct: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSER-----YTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRVRSKAKPRSSRSFSCVLYLILHELD 120
           RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR                         
Sbjct: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHR------------------------- 120

Query: 121 LNMENCFDSQGTFVLQDNRFRWLTRMSVDP-QNESQDNSADGENKVAQATSMHLYFPCGI 180
                     GTFVLQDNRFRWLTRMSVDP Q ESQDNSADGENK AQATSMHLYFPCGI
Sbjct: 121 ----------GTFVLQDNRFRWLTRMSVDPPQGESQDNSADGENKAAQATSMHLYFPCGI 171

Query: 181 IRGALSNLGIPCAVSADISNLPACSFVVRIK 210
           IRGALSNLGIPCAVSADISNLPACSFVVRIK
Sbjct: 181 IRGALSNLGIPCAVSADISNLPACSFVVRIK 171

[Close]
BLAST of CsGy1G026290 vs. TAIR 10
Match: AT3G05000.1 (Transport protein particle (TRAPP) component )

HSP 1 Score: 279.6 bits (714), Expect = 2.0e-75
Identity = 144/213 (67.61%), Postives = 160/213 (75.12%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60
           MGREVAESCVD++L EMV+ Y  RFYANKPELAARRIEAIGYQVGHQLSE     RYTME
Sbjct: 1   MGREVAESCVDTMLMEMVAMYSGRFYANKPELAARRIEAIGYQVGHQLSE-----RYTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRVRSKAKPRSSRSFSCVLYLILHELD 120
           RPRF+DHLEAIKFICKDFWSE+FKKQIDNLKTNHR                         
Sbjct: 61  RPRFSDHLEAIKFICKDFWSEVFKKQIDNLKTNHR------------------------- 120

Query: 121 LNMENCFDSQGTFVLQDNRFRWLTRMSVDP--QNESQDNSADGENKVAQATSMHLYFPCG 180
                     GTFVLQDN+FRWL+R+S+DP  +NE+QD S  GE+K AQA SM+LYFPCG
Sbjct: 121 ----------GTFVLQDNKFRWLSRVSIDPSSENETQDPSTPGESKAAQAVSMYLYFPCG 173

Query: 181 IIRGALSNLGIPCAVSADISNLPACSFVVRIKA 212
           IIRG LSNLGIPCAVSADIS+LP CSFV+R+KA
Sbjct: 181 IIRGVLSNLGIPCAVSADISSLPTCSFVIRVKA 173

The following BLAST results are available for this feature:
BLAST of CsGy1G026290 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q32L781.1e-2539.43Trafficking protein particle complex subunit 6B OS=Bos taurus OX=9913 GN=TRAPPC6... [more]
Q86SZ21.1e-2539.43Trafficking protein particle complex subunit 6B OS=Homo sapiens OX=9606 GN=TRAPP... [more]
F1QMV34.2e-2537.71Trafficking protein particle complex subunit 6b OS=Danio rerio OX=7955 GN=trappc... [more]
Q9D2895.5e-2538.29Trafficking protein particle complex subunit 6B OS=Mus musculus OX=10090 GN=Trap... [more]
Q78XR06.5e-1831.61Trafficking protein particle complex subunit 6A OS=Mus musculus OX=10090 GN=Trap... [more]
BLAST of CsGy1G026290 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031736214.15.67e-11983.41trafficking protein particle complex subunit 6B isoform X1 [Cucumis sativus] >KA... [more]
XP_008450727.18.69e-11682.46PREDICTED: trafficking protein particle complex subunit 6B isoform X1 [Cucumis m... [more]
XP_004135644.11.20e-11281.04trafficking protein particle complex subunit 6B isoform X2 [Cucumis sativus][more]
XP_008450728.14.88e-11280.57PREDICTED: trafficking protein particle complex subunit 6B isoform X2 [Cucumis m... [more]
XP_038878648.18.08e-11179.62trafficking protein particle complex subunit 6B [Benincasa hispida][more]
BLAST of CsGy1G026290 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BQW94.21e-11682.46trafficking protein particle complex subunit 6B isoform X1 OS=Cucumis melo OX=36... [more]
A0A0A0M1M85.80e-11381.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573010 PE=3 SV=1[more]
A0A5D3CG652.36e-11280.57Trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo var. ... [more]
A0A1S3BP902.36e-11280.57trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo OX=36... [more]
A0A6J1I0Q51.84e-10778.67trafficking protein particle complex subunit 6B OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of CsGy1G026290 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G05000.12.0e-7567.61Transport protein particle (TRAPP) component [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 209..211
NoneNo IPR availableGENE3D3.30.1380.20Trafficking protein particle complex subunit 3coord: 5..211
e-value: 2.4E-55
score: 188.5
NoneNo IPR availablePANTHERPTHR12817:SF6TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6A-RELATEDcoord: 1..95
coord: 128..210
IPR007194Transport protein particle (TRAPP) componentPFAMPF04051TRAPPcoord: 11..209
e-value: 1.3E-41
score: 141.9
IPR037992TRAPP complex, Trs33 subunitPANTHERPTHR12817TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6Bcoord: 1..95
coord: 128..210
IPR037992TRAPP complex, Trs33 subunitCDDcd14944TRAPPC6A_Trs33coord: 6..210
e-value: 2.50664E-72
score: 214.811
IPR024096NO signalling/Golgi transport ligand-binding domain superfamilySUPERFAMILY111126Ligand-binding domain in the NO signalling and Golgi transportcoord: 4..208

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G026290.2CsGy1G026290.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process GO:0043087 regulation of GTPase activity
biological_process GO:0048193 Golgi vesicle transport
cellular_component GO:0005801 cis-Golgi network
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0030008 TRAPP complex